Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 13259552
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|13259552 interferon, alpha-inducible protein 6 isoform a
[Homo sapiens]
(130 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|13259552 interferon, alpha-inducible protein 6 isoform a [Hom... 258 1e-69
gi|13259548 interferon, alpha-inducible protein 6 isoform b [Hom... 252 7e-68
gi|13259550 interferon, alpha-inducible protein 6 isoform c [Hom... 250 2e-67
gi|14042964 TLH29 protein precursor [Homo sapiens] 85 2e-17
gi|46048520 interferon, alpha-inducible protein 27-like 1 [Homo ... 78 2e-15
gi|21699070 interferon, alpha-inducible protein 27-like 1 [Homo ... 78 2e-15
gi|194272171 interferon, alpha-inducible protein 27 isoform 1 [H... 74 3e-14
gi|55925614 interferon, alpha-inducible protein 27 isoform 2 [Ho... 72 2e-13
gi|14149631 ring finger protein 112 [Homo sapiens] 40 7e-04
gi|70995235 AMMECR1 protein isoform 2 [Homo sapiens] 35 0.022
gi|7669554 AMMECR1 protein isoform 1 [Homo sapiens] 35 0.022
gi|27363480 hypothetical protein LOC55262 [Homo sapiens] 33 0.083
gi|109255251 loricrin [Homo sapiens] 31 0.32
gi|239754100 PREDICTED: hypothetical protein XP_002345880 [Homo ... 30 0.54
gi|239748649 PREDICTED: hypothetical protein [Homo sapiens] 30 0.54
gi|239742674 PREDICTED: hypothetical protein XP_002342580 [Homo ... 30 0.54
gi|19923345 RNA binding motif protein 12 [Homo sapiens] 30 0.54
gi|23510462 RNA binding motif protein 12 [Homo sapiens] 30 0.54
gi|14149675 cleavage stimulation factor, 3' pre-RNA, subunit 2, ... 30 0.71
gi|189571647 hypothetical protein LOC79684 [Homo sapiens] 29 0.92
gi|126352608 elastin isoform e precursor [Homo sapiens] 29 1.2
gi|126352440 elastin isoform a precursor [Homo sapiens] 29 1.2
gi|4557699 keratin 12 [Homo sapiens] 29 1.2
gi|153791670 keratin 76 [Homo sapiens] 28 2.1
gi|25952147 tumor necrosis factor ligand superfamily, member 14 ... 28 2.1
gi|4506431 RAS p21 protein activator 1 isoform 1 [Homo sapiens] 28 2.1
gi|86788132 EGF-containing fibulin-like extracellular matrix pro... 28 2.1
gi|86788015 EGF-containing fibulin-like extracellular matrix pro... 28 2.1
gi|9665262 EGF-containing fibulin-like extracellular matrix prot... 28 2.1
gi|46519147 ankyrin repeat and KH domain containing 1 isoform 1 ... 28 2.1
>gi|13259552 interferon, alpha-inducible protein 6 isoform a [Homo
sapiens]
Length = 130
Score = 258 bits (658), Expect = 1e-69
Identities = 130/130 (100%), Positives = 130/130 (100%)
Query: 1 MRQKAVSLFLCYLLLFTCSGVEAGKKKCSESSDSGSGFWKALTFMAVGGGLAVAGLPALG 60
MRQKAVSLFLCYLLLFTCSGVEAGKKKCSESSDSGSGFWKALTFMAVGGGLAVAGLPALG
Sbjct: 1 MRQKAVSLFLCYLLLFTCSGVEAGKKKCSESSDSGSGFWKALTFMAVGGGLAVAGLPALG 60
Query: 61 FTGAGIAANSVAASLMSWSAILNGGGVPAGGLVATLQSLGAGGSSVVIGNIGALMGYATH 120
FTGAGIAANSVAASLMSWSAILNGGGVPAGGLVATLQSLGAGGSSVVIGNIGALMGYATH
Sbjct: 61 FTGAGIAANSVAASLMSWSAILNGGGVPAGGLVATLQSLGAGGSSVVIGNIGALMGYATH 120
Query: 121 KYLDSEEDEE 130
KYLDSEEDEE
Sbjct: 121 KYLDSEEDEE 130
>gi|13259548 interferon, alpha-inducible protein 6 isoform b [Homo
sapiens]
Length = 134
Score = 252 bits (643), Expect = 7e-68
Identities = 130/134 (97%), Positives = 130/134 (97%), Gaps = 4/134 (2%)
Query: 1 MRQKAVSLFLCYLLLFTCSGVEAG----KKKCSESSDSGSGFWKALTFMAVGGGLAVAGL 56
MRQKAVSLFLCYLLLFTCSGVEAG KKKCSESSDSGSGFWKALTFMAVGGGLAVAGL
Sbjct: 1 MRQKAVSLFLCYLLLFTCSGVEAGENAGKKKCSESSDSGSGFWKALTFMAVGGGLAVAGL 60
Query: 57 PALGFTGAGIAANSVAASLMSWSAILNGGGVPAGGLVATLQSLGAGGSSVVIGNIGALMG 116
PALGFTGAGIAANSVAASLMSWSAILNGGGVPAGGLVATLQSLGAGGSSVVIGNIGALMG
Sbjct: 61 PALGFTGAGIAANSVAASLMSWSAILNGGGVPAGGLVATLQSLGAGGSSVVIGNIGALMG 120
Query: 117 YATHKYLDSEEDEE 130
YATHKYLDSEEDEE
Sbjct: 121 YATHKYLDSEEDEE 134
>gi|13259550 interferon, alpha-inducible protein 6 isoform c [Homo
sapiens]
Length = 138
Score = 250 bits (639), Expect = 2e-67
Identities = 130/138 (94%), Positives = 130/138 (94%), Gaps = 8/138 (5%)
Query: 1 MRQKAVSLFLCYLLLFTCSGVEAG--------KKKCSESSDSGSGFWKALTFMAVGGGLA 52
MRQKAVSLFLCYLLLFTCSGVEAG KKKCSESSDSGSGFWKALTFMAVGGGLA
Sbjct: 1 MRQKAVSLFLCYLLLFTCSGVEAGENAGKDAGKKKCSESSDSGSGFWKALTFMAVGGGLA 60
Query: 53 VAGLPALGFTGAGIAANSVAASLMSWSAILNGGGVPAGGLVATLQSLGAGGSSVVIGNIG 112
VAGLPALGFTGAGIAANSVAASLMSWSAILNGGGVPAGGLVATLQSLGAGGSSVVIGNIG
Sbjct: 61 VAGLPALGFTGAGIAANSVAASLMSWSAILNGGGVPAGGLVATLQSLGAGGSSVVIGNIG 120
Query: 113 ALMGYATHKYLDSEEDEE 130
ALMGYATHKYLDSEEDEE
Sbjct: 121 ALMGYATHKYLDSEEDEE 138
>gi|14042964 TLH29 protein precursor [Homo sapiens]
Length = 130
Score = 84.7 bits (208), Expect = 2e-17
Identities = 45/79 (56%), Positives = 61/79 (77%), Gaps = 8/79 (10%)
Query: 46 AVGGGLAVAGLP----ALGFTGAGIAANSVAASLMSWSAILNGGGVPAGGLVATLQSLGA 101
AVGG LAV +P A+GFTGAGIAA+S+AA +MS +AI NGGGV AG LVATLQS+GA
Sbjct: 9 AVGGALAVGAVPVVLSAMGFTGAGIAASSIAAKMMSAAAIANGGGVSAGSLVATLQSVGA 68
Query: 102 GG----SSVVIGNIGALMG 116
G S++++ ++G+++G
Sbjct: 69 AGLSTSSNILLASVGSVLG 87
>gi|46048520 interferon, alpha-inducible protein 27-like 1 [Homo
sapiens]
Length = 104
Score = 78.2 bits (191), Expect = 2e-15
Identities = 46/93 (49%), Positives = 55/93 (59%)
Query: 33 DSGSGFWKALTFMAVGGGLAVAGLPALGFTGAGIAANSVAASLMSWSAILNGGGVPAGGL 92
DSG A+ V G + L A+GFT GIAA+S+AA +MS +AI NGGGV AG L
Sbjct: 8 DSGRAAVAAVVGGVVAVGTVLVALSAMGFTSVGIAASSIAAKMMSTAAIANGGGVAAGSL 67
Query: 93 VATLQSLGAGGSSVVIGNIGALMGYATHKYLDS 125
VA LQS+GA G SV IG G A +L S
Sbjct: 68 VAILQSVGAAGLSVTSKVIGGFAGTALGAWLGS 100
>gi|21699070 interferon, alpha-inducible protein 27-like 1 [Homo
sapiens]
Length = 104
Score = 78.2 bits (191), Expect = 2e-15
Identities = 46/93 (49%), Positives = 55/93 (59%)
Query: 33 DSGSGFWKALTFMAVGGGLAVAGLPALGFTGAGIAANSVAASLMSWSAILNGGGVPAGGL 92
DSG A+ V G + L A+GFT GIAA+S+AA +MS +AI NGGGV AG L
Sbjct: 8 DSGRAAVAAVVGGVVAVGTVLVALSAMGFTSVGIAASSIAAKMMSTAAIANGGGVAAGSL 67
Query: 93 VATLQSLGAGGSSVVIGNIGALMGYATHKYLDS 125
VA LQS+GA G SV IG G A +L S
Sbjct: 68 VAILQSVGAAGLSVTSKVIGGFAGTALGAWLGS 100
>gi|194272171 interferon, alpha-inducible protein 27 isoform 1 [Homo
sapiens]
Length = 122
Score = 74.3 bits (181), Expect = 3e-14
Identities = 41/77 (53%), Positives = 57/77 (74%), Gaps = 8/77 (10%)
Query: 45 MAVGGGLAVAGLP----ALGFTGAGIAANSVAASLMSWSAILNGGGVPAGGLVATLQSLG 100
+ +GG +A+A +P A+GFT AGIA++S+AA +MS +AI NGGGV +G LVATLQSLG
Sbjct: 36 VVIGGVVAMAAVPMVLSAMGFTAAGIASSSIAAKMMSAAAIANGGGVASGSLVATLQSLG 95
Query: 101 AGGSS----VVIGNIGA 113
A G S ++G+IG+
Sbjct: 96 ATGLSGLTKFILGSIGS 112
>gi|55925614 interferon, alpha-inducible protein 27 isoform 2 [Homo
sapiens]
Length = 119
Score = 71.6 bits (174), Expect = 2e-13
Identities = 41/74 (55%), Positives = 55/74 (74%), Gaps = 5/74 (6%)
Query: 45 MAVGGGLAVAG-LPALGFTGAGIAANSVAASLMSWSAILNGGGVPAGGLVATLQSLGAGG 103
+ +GG +AV L A+GFT AGIA++S+AA +MS +AI NGGGV +G LVATLQSLGA G
Sbjct: 36 VVIGGVVAVPMVLSAMGFTAAGIASSSIAAKMMSAAAIANGGGVASGSLVATLQSLGATG 95
Query: 104 SS----VVIGNIGA 113
S ++G+IG+
Sbjct: 96 LSGLTKFILGSIGS 109
>gi|14149631 ring finger protein 112 [Homo sapiens]
Length = 632
Score = 39.7 bits (91), Expect = 7e-04
Identities = 32/87 (36%), Positives = 45/87 (51%), Gaps = 18/87 (20%)
Query: 45 MAVGGGLAVAGLPAL--GFTGAGIAANSVAASLMSWSAILNGGGVPAGGLVATLQSLGAG 102
+A GG AGL L G GAG+AA ++AA G+VA ++GA
Sbjct: 548 LAAVGGAVGAGLMGLAGGVVGAGMAAAALAAE---------------AGMVAAGAAVGAT 592
Query: 103 GSSVVIGNIGALMGYATHKYLDSEEDE 129
G++VV G +GA + AT ++ EEDE
Sbjct: 593 GAAVVGGGVGAGLA-ATVGCMEKEEDE 618
>gi|70995235 AMMECR1 protein isoform 2 [Homo sapiens]
Length = 296
Score = 34.7 bits (78), Expect = 0.022
Identities = 27/91 (29%), Positives = 38/91 (41%), Gaps = 10/91 (10%)
Query: 18 CSGVEAGKKKCSESSDSGSGFWKALTFMAVGGGLAVAGLPALGFTGAGIAANSVAASLMS 77
C GV+ K+K S S SGSG + + G + LG GAG N +
Sbjct: 5 CCGVK--KQKLSSSPPSGSGGGGGASSSSHCSGESQCRAGELGLGGAGTRLNGLGG---- 58
Query: 78 WSAILNGGGVPAGGLVATLQSLGAGGSSVVI 108
L GGG +G ++ Q G GG + +
Sbjct: 59 ----LTGGGSGSGCTLSPPQGCGGGGGGIAL 85
>gi|7669554 AMMECR1 protein isoform 1 [Homo sapiens]
Length = 333
Score = 34.7 bits (78), Expect = 0.022
Identities = 27/91 (29%), Positives = 38/91 (41%), Gaps = 10/91 (10%)
Query: 18 CSGVEAGKKKCSESSDSGSGFWKALTFMAVGGGLAVAGLPALGFTGAGIAANSVAASLMS 77
C GV+ K+K S S SGSG + + G + LG GAG N +
Sbjct: 5 CCGVK--KQKLSSSPPSGSGGGGGASSSSHCSGESQCRAGELGLGGAGTRLNGLGG---- 58
Query: 78 WSAILNGGGVPAGGLVATLQSLGAGGSSVVI 108
L GGG +G ++ Q G GG + +
Sbjct: 59 ----LTGGGSGSGCTLSPPQGCGGGGGGIAL 85
>gi|27363480 hypothetical protein LOC55262 [Homo sapiens]
Length = 580
Score = 32.7 bits (73), Expect = 0.083
Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Query: 48 GGGLAVAGLPALGFTGAGIAANSVAASLMSWSAILNGGGVPAGGLVATLQSLGAGG 103
G G G P LG GA + A+L S SA GGG+P GG S GG
Sbjct: 55 GAGSGTGGGPGLGSRGAWAELATALAALASVSA---GGGMPGGGGAGDQDSEPPGG 107
>gi|109255251 loricrin [Homo sapiens]
Length = 312
Score = 30.8 bits (68), Expect = 0.32
Identities = 24/87 (27%), Positives = 33/87 (37%), Gaps = 4/87 (4%)
Query: 18 CSGVEAGKKKCSESSDSGSGFWKALTFMAVGGGLAVAGLPALGFTGAGIAANSVAASLMS 77
C G C S GS + F + GGG + G G G + +V S
Sbjct: 103 CFSSGGGGSGCFSSGGGGSSGGGSGCFSSGGGGSSGGGSGCFSSGGGGFSGQAV--QCQS 160
Query: 78 WSAILNGGGVPAGGLVATLQSLGAGGS 104
+ + +GG +GG S G GGS
Sbjct: 161 YGGVSSGGS--SGGGSGCFSSGGGGGS 185
Score = 28.5 bits (62), Expect = 1.6
Identities = 28/101 (27%), Positives = 38/101 (37%), Gaps = 7/101 (6%)
Query: 20 GVEAGKKKCSESSDSGSGFWKALTFMAVGGGLAVAGLPALGFTGAGIAANSVAASLMSWS 79
G G C S GSG + + + GGG G +G G S S
Sbjct: 95 GSSGGGSGCFSSGGGGSGCFSSGGGGSSGGGSGCFSSGGGGSSGGGSGCFSSGGGGFSGQ 154
Query: 80 AI--LNGGGVPAGGLVATLQSLGAGGSSVVIGNIGALMGYA 118
A+ + GGV +GG S G G G G++ GY+
Sbjct: 155 AVQCQSYGGVSSGG-----SSGGGSGCFSSGGGGGSVCGYS 190
Score = 26.9 bits (58), Expect = 4.6
Identities = 20/69 (28%), Positives = 27/69 (39%), Gaps = 6/69 (8%)
Query: 48 GGGLAVAGLPALGFTGAGIAANSVAASLMSWSAILNGGGVPAGGLVATLQSLGAGGSSVV 107
GGG +G + G G ++ + S I GG V GG S G GG
Sbjct: 232 GGGSGGSGCFSSGGGGGSSGCGGGSSGIGSGCIISGGGSVCGGG------SSGGGGGGSS 285
Query: 108 IGNIGALMG 116
+G G+ G
Sbjct: 286 VGGSGSGKG 294
>gi|239754100 PREDICTED: hypothetical protein XP_002345880 [Homo
sapiens]
Length = 125
Score = 30.0 bits (66), Expect = 0.54
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 51 LAVAGLPALGFTGAGIAANSVAASLMSWSAILNGGGVPAGGLVATLQSLGAGGSSVVIG 109
+AVAG+PA+ FT A +++ S S G P G++ + SLG G + ++G
Sbjct: 1 MAVAGVPAVSFTSPCEPAPALSRSQTSRGPAQPSKGGP--GVLGSKSSLGRGPTGTLVG 57
>gi|239748649 PREDICTED: hypothetical protein [Homo sapiens]
Length = 125
Score = 30.0 bits (66), Expect = 0.54
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 51 LAVAGLPALGFTGAGIAANSVAASLMSWSAILNGGGVPAGGLVATLQSLGAGGSSVVIG 109
+AVAG+PA+ FT A +++ S S G P G++ + SLG G + ++G
Sbjct: 1 MAVAGVPAVSFTSPCEPAPALSRSQTSRGPAQPSKGGP--GVLGSKSSLGRGPTGTLVG 57
>gi|239742674 PREDICTED: hypothetical protein XP_002342580 [Homo
sapiens]
Length = 125
Score = 30.0 bits (66), Expect = 0.54
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 51 LAVAGLPALGFTGAGIAANSVAASLMSWSAILNGGGVPAGGLVATLQSLGAGGSSVVIG 109
+AVAG+PA+ FT A +++ S S G P G++ + SLG G + ++G
Sbjct: 1 MAVAGVPAVSFTSPCEPAPALSRSQTSRGPAQPSKGGP--GVLGSKSSLGRGPTGTLVG 57
>gi|19923345 RNA binding motif protein 12 [Homo sapiens]
Length = 932
Score = 30.0 bits (66), Expect = 0.54
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 10/68 (14%)
Query: 50 GLAVAGLPALGFTGAGIAANSVAASLMSWSAI----LNGGGVPAGGLVATLQSLGAGGSS 105
G+ AGLP +G AG+ + ++ + SAI L G G+P+ G+ + AGG
Sbjct: 651 GMPNAGLPGVGLPSAGLPGAGLPSTGLPGSAITSAGLPGAGMPSAGIPS------AGGEE 704
Query: 106 VVIGNIGA 113
+G+
Sbjct: 705 HAFLTVGS 712
Score = 28.5 bits (62), Expect = 1.6
Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 12/73 (16%)
Query: 45 MAVGGGLAVAGLPALGFTGAGIAANSVAASLMSWSAILNGGGVPAGGLV-ATLQSLGAGG 103
M V G AV G+P G G G+ SA L G G+P+ GL + + S G G
Sbjct: 641 MPVPGNPAVPGMPNAGLPGVGLP-----------SAGLPGAGLPSTGLPGSAITSAGLPG 689
Query: 104 SSVVIGNIGALMG 116
+ + I + G
Sbjct: 690 AGMPSAGIPSAGG 702
>gi|23510462 RNA binding motif protein 12 [Homo sapiens]
Length = 932
Score = 30.0 bits (66), Expect = 0.54
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 10/68 (14%)
Query: 50 GLAVAGLPALGFTGAGIAANSVAASLMSWSAI----LNGGGVPAGGLVATLQSLGAGGSS 105
G+ AGLP +G AG+ + ++ + SAI L G G+P+ G+ + AGG
Sbjct: 651 GMPNAGLPGVGLPSAGLPGAGLPSTGLPGSAITSAGLPGAGMPSAGIPS------AGGEE 704
Query: 106 VVIGNIGA 113
+G+
Sbjct: 705 HAFLTVGS 712
Score = 28.5 bits (62), Expect = 1.6
Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 12/73 (16%)
Query: 45 MAVGGGLAVAGLPALGFTGAGIAANSVAASLMSWSAILNGGGVPAGGLV-ATLQSLGAGG 103
M V G AV G+P G G G+ SA L G G+P+ GL + + S G G
Sbjct: 641 MPVPGNPAVPGMPNAGLPGVGLP-----------SAGLPGAGLPSTGLPGSAITSAGLPG 689
Query: 104 SSVVIGNIGALMG 116
+ + I + G
Sbjct: 690 AGMPSAGIPSAGG 702
>gi|14149675 cleavage stimulation factor, 3' pre-RNA, subunit 2,
64kDa, tau variant [Homo sapiens]
Length = 616
Score = 29.6 bits (65), Expect = 0.71
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 48 GGGLAVAGLPALGFTGAGIAANSVAASLMSWSAILNGGGVPAGGLVATLQSLGAGGSS 105
G G+ G+ G GAGI + + + +I GGG+ GG+ + G+ SS
Sbjct: 505 GAGMQGTGIQGTGMQGAGIQGGGMQGAGIQGVSI-QGGGIQGGGIQGASKQGGSQPSS 561
Score = 26.6 bits (57), Expect = 6.0
Identities = 16/58 (27%), Positives = 25/58 (43%)
Query: 49 GGLAVAGLPALGFTGAGIAANSVAASLMSWSAILNGGGVPAGGLVATLQSLGAGGSSV 106
G V G+ +G GAG+ + + M + I GG AG ++Q G G +
Sbjct: 491 GPRQVPGISGVGNPGAGMQGTGIQGTGMQGAGIQGGGMQGAGIQGVSIQGGGIQGGGI 548
>gi|189571647 hypothetical protein LOC79684 [Homo sapiens]
Length = 507
Score = 29.3 bits (64), Expect = 0.92
Identities = 17/46 (36%), Positives = 22/46 (47%)
Query: 49 GGLAVAGLPALGFTGAGIAANSVAASLMSWSAILNGGGVPAGGLVA 94
G A +G A G G G+ S A+S +S+S GGG A A
Sbjct: 53 GSAAGSGAAASGGLGLGLGGRSAASSSVSFSPGGGGGGAAAAAAAA 98
>gi|126352608 elastin isoform e precursor [Homo sapiens]
Length = 705
Score = 28.9 bits (63), Expect = 1.2
Identities = 32/89 (35%), Positives = 38/89 (42%), Gaps = 15/89 (16%)
Query: 40 KALTFMAVG----GGLAVAGLPALGFTGAGIAANSVAASLMSWSA-----ILNGGG-VPA 89
KA F VG GGL V GL G G G + AA + A +L G G P
Sbjct: 616 KAAQFGLVGAAGLGGLGVGGLGVPGVGGLGGIPPAAAAKAAKYGAAGLGGVLGGAGQFPL 675
Query: 90 GGLVATLQSLGAGGSSVVIGNIGALMGYA 118
GG+ A G G S + G GA +G A
Sbjct: 676 GGVAA---RPGFGLSPIFPG--GACLGKA 699
Score = 28.5 bits (62), Expect = 1.6
Identities = 26/88 (29%), Positives = 34/88 (38%), Gaps = 6/88 (6%)
Query: 35 GSGFWKALTFMAVGGG-LAVAGLPAL----GFTGAGIAANSVAASLMSWSAILNGGGVPA 89
G F+ A+GGG L G P G GAG+ A A +++ L GGV
Sbjct: 39 GGVFYPGAGLGALGGGALGPGGKPLKPVPGGLAGAGLGAGLGAFPAVTFPGALVPGGVAD 98
Query: 90 GGLVATLQSLGAG-GSSVVIGNIGALMG 116
GAG G +G +G G
Sbjct: 99 AAAAYKAAKAGAGLGGVPGVGGLGVSAG 126
Score = 27.3 bits (59), Expect = 3.5
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 49 GGLAVAGLPALGFTGAGIAANSV--AASLMSWSAILNGGGVPAGGLVATLQSLGA 101
GG+ G+ A GF G G+ + A + + GGVP G+ Q+ A
Sbjct: 392 GGIPTYGVGAGGFPGFGVGVGGIPGVAGVPGVGGVPGVGGVPGVGISPEAQAAAA 446
Score = 26.9 bits (58), Expect = 4.6
Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Query: 45 MAVGGGLAVAGLPALGFTGAGIAANS---VAASLMSWSAILNGGGVPAGGLVATLQSLGA 101
+ V G+ VA P +G G AA S VAA +A G G+P G+ + LG
Sbjct: 488 VGVAPGVGVA--PGIGPGGVAAAAKSAAKVAAKAQLRAAAGLGAGIPGLGVGVGVPGLGV 545
Query: 102 GGSSVVIGNIGA 113
G +G +GA
Sbjct: 546 GAGVPGLG-VGA 556
>gi|126352440 elastin isoform a precursor [Homo sapiens]
Length = 724
Score = 28.9 bits (63), Expect = 1.2
Identities = 32/89 (35%), Positives = 38/89 (42%), Gaps = 15/89 (16%)
Query: 40 KALTFMAVG----GGLAVAGLPALGFTGAGIAANSVAASLMSWSA-----ILNGGG-VPA 89
KA F VG GGL V GL G G G + AA + A +L G G P
Sbjct: 635 KAAQFGLVGAAGLGGLGVGGLGVPGVGGLGGIPPAAAAKAAKYGAAGLGGVLGGAGQFPL 694
Query: 90 GGLVATLQSLGAGGSSVVIGNIGALMGYA 118
GG+ A G G S + G GA +G A
Sbjct: 695 GGVAA---RPGFGLSPIFPG--GACLGKA 718
Score = 28.5 bits (62), Expect = 1.6
Identities = 26/88 (29%), Positives = 34/88 (38%), Gaps = 6/88 (6%)
Query: 35 GSGFWKALTFMAVGGG-LAVAGLPAL----GFTGAGIAANSVAASLMSWSAILNGGGVPA 89
G F+ A+GGG L G P G GAG+ A A +++ L GGV
Sbjct: 39 GGVFYPGAGLGALGGGALGPGGKPLKPVPGGLAGAGLGAGLGAFPAVTFPGALVPGGVAD 98
Query: 90 GGLVATLQSLGAG-GSSVVIGNIGALMG 116
GAG G +G +G G
Sbjct: 99 AAAAYKAAKAGAGLGGVPGVGGLGVSAG 126
Score = 27.3 bits (59), Expect = 3.5
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 49 GGLAVAGLPALGFTGAGIAANSV--AASLMSWSAILNGGGVPAGGLVATLQSLGA 101
GG+ G+ A GF G G+ + A + + GGVP G+ Q+ A
Sbjct: 392 GGIPTYGVGAGGFPGFGVGVGGIPGVAGVPGVGGVPGVGGVPGVGISPEAQAAAA 446
Score = 26.9 bits (58), Expect = 4.6
Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Query: 45 MAVGGGLAVAGLPALGFTGAGIAANS---VAASLMSWSAILNGGGVPAGGLVATLQSLGA 101
+ V G+ VA P +G G AA S VAA +A G G+P G+ + LG
Sbjct: 507 VGVAPGVGVA--PGIGPGGVAAAAKSAAKVAAKAQLRAAAGLGAGIPGLGVGVGVPGLGV 564
Query: 102 GGSSVVIGNIGA 113
G +G +GA
Sbjct: 565 GAGVPGLG-VGA 575
>gi|4557699 keratin 12 [Homo sapiens]
Length = 494
Score = 28.9 bits (63), Expect = 1.2
Identities = 28/107 (26%), Positives = 46/107 (42%), Gaps = 2/107 (1%)
Query: 24 GKKKCSESSDSGSGFW-KALTFMA-VGGGLAVAGLPALGFTGAGIAANSVAASLMSWSAI 81
G+ + +S GSG+ A F A GGG + A + G + +S+A L +
Sbjct: 28 GRPRGMSASSVGSGYGGSAFGFGASCGGGFSAASMFGSSSGFGGGSGSSMAGGLGAGYGR 87
Query: 82 LNGGGVPAGGLVATLQSLGAGGSSVVIGNIGALMGYATHKYLDSEED 128
GGG G + S G G ++ GN G L+ + + + + D
Sbjct: 88 ALGGGSFGGLGMGFGGSPGGGSLGILSGNDGGLLSGSEKETMQNLND 134
>gi|153791670 keratin 76 [Homo sapiens]
Length = 638
Score = 28.1 bits (61), Expect = 2.1
Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
Query: 32 SDSGSGFWKALTFMAVGGGLAVAGLPALGFTGAGIAANSVAASLMSWSAILNGGGVPAGG 91
S SGSG +K + + G V+G G+ G + S S+ + +G + G
Sbjct: 530 SGSGSGGYKGGSSSSSSSGYGVSGGSGSGYGGVSSGSTGGRGSSGSYQSSSSGSRLGGAG 589
Query: 92 LVATLQSLGAGGSSVVIGNIG 112
++ S G G SS I G
Sbjct: 590 SISVSHS-GMGSSSGSIQTSG 609
>gi|25952147 tumor necrosis factor ligand superfamily, member 14
isoform 2 [Homo sapiens]
Length = 204
Score = 28.1 bits (61), Expect = 2.1
Identities = 29/109 (26%), Positives = 42/109 (38%), Gaps = 10/109 (9%)
Query: 16 FTCSGVEAGKKKCSESSDSGSGFWKALTFMAVGGGLAVAGLPALGFTGAGIAANSVAASL 75
FT G ++ CS + D +G W+ L + + PA TGA + L
Sbjct: 21 FTRLGRSHRRQSCSVARDGPAGSWEQL----IQERRSHEVNPAAHLTGANSSLTGSGGPL 76
Query: 76 MSWS-----AILNGGGVPAGGLVATLQSLGAGGSSVVIGNIGALMGYAT 119
+ W A L G G LV T S V +G +G +G A+
Sbjct: 77 L-WETQLGLAFLRGLSYHDGALVVTKAGYYYIYSKVQLGGVGCPLGLAS 124
>gi|4506431 RAS p21 protein activator 1 isoform 1 [Homo sapiens]
Length = 1047
Score = 28.1 bits (61), Expect = 2.1
Identities = 21/83 (25%), Positives = 31/83 (37%), Gaps = 8/83 (9%)
Query: 34 SGSGFWKALTFMAVGGGLAVAGLP--------ALGFTGAGIAANSVAASLMSWSAILNGG 85
+GS + A+ + + L VA P G G G A S S + L G
Sbjct: 25 AGSSAYPAVCRVKIPAALPVAAAPYPGLVETGVAGTLGGGAALGSEFLGAGSVAGALGGA 84
Query: 86 GVPAGGLVATLQSLGAGGSSVVI 108
G+ GG A + AG + +
Sbjct: 85 GLTGGGTAAGVAGAAAGVAGAAV 107
>gi|86788132 EGF-containing fibulin-like extracellular matrix
protein 1 precursor [Homo sapiens]
Length = 493
Score = 28.1 bits (61), Expect = 2.1
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 57 PALGFTGAGIAANSVAASLMSWSAILNGGGVPAGGLVATLQSLGAGGSSVVI 108
PA G +GA VAAS M+ S +L GGG A + G ++ VI
Sbjct: 90 PAEGTSGA--TTGVVAASSMATSGVLPGGGFVASAAAVAGPEMQTGRNNFVI 139
>gi|86788015 EGF-containing fibulin-like extracellular matrix
protein 1 precursor [Homo sapiens]
Length = 493
Score = 28.1 bits (61), Expect = 2.1
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 57 PALGFTGAGIAANSVAASLMSWSAILNGGGVPAGGLVATLQSLGAGGSSVVI 108
PA G +GA VAAS M+ S +L GGG A + G ++ VI
Sbjct: 90 PAEGTSGA--TTGVVAASSMATSGVLPGGGFVASAAAVAGPEMQTGRNNFVI 139
>gi|9665262 EGF-containing fibulin-like extracellular matrix protein
1 precursor [Homo sapiens]
Length = 493
Score = 28.1 bits (61), Expect = 2.1
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 57 PALGFTGAGIAANSVAASLMSWSAILNGGGVPAGGLVATLQSLGAGGSSVVI 108
PA G +GA VAAS M+ S +L GGG A + G ++ VI
Sbjct: 90 PAEGTSGA--TTGVVAASSMATSGVLPGGGFVASAAAVAGPEMQTGRNNFVI 139
>gi|46519147 ankyrin repeat and KH domain containing 1 isoform 1
[Homo sapiens]
Length = 2542
Score = 28.1 bits (61), Expect = 2.1
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 27 KCSESSDSGSGFWKALTFMAVGGGLAVAGLPALGFTG 63
+C+ SSD GS +L V G + G P + TG
Sbjct: 934 QCNFSSDLGSNGTNSLELQKVSGNQQIVGQPQIAITG 970
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.133 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,897,305
Number of Sequences: 37866
Number of extensions: 210443
Number of successful extensions: 810
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 695
Number of HSP's gapped (non-prelim): 120
length of query: 130
length of database: 18,247,518
effective HSP length: 90
effective length of query: 40
effective length of database: 14,839,578
effective search space: 593583120
effective search space used: 593583120
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.