BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|48255926 NADH-ubiquinone oxidoreductase flavoprotein 3 isoform b precursor [Homo sapiens] (108 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|48255926 NADH-ubiquinone oxidoreductase flavoprotein 3 isofor... 221 1e-58 gi|48255924 NADH-ubiquinone oxidoreductase flavoprotein 3 isofor... 114 2e-26 gi|194239664 SHC (Src homology 2 domain containing) transforming... 38 0.002 gi|32261324 SHC (Src homology 2 domain containing) transforming ... 38 0.002 gi|169214031 PREDICTED: hypothetical LOC646508 [Homo sapiens] 35 0.017 gi|239751865 PREDICTED: hypothetical LOC646508 [Homo sapiens] 35 0.017 gi|169213419 PREDICTED: hypothetical LOC646508 [Homo sapiens] 35 0.017 gi|52851437 transmembrane protein 62 [Homo sapiens] 30 0.32 gi|150417989 cyclin K isoform 1 [Homo sapiens] 30 0.42 gi|90193619 nuclear matrix transcription factor 4 isoform c [Hom... 30 0.55 gi|90193617 nuclear matrix transcription factor 4 isoform b [Hom... 30 0.55 gi|90193615 nuclear matrix transcription factor 4 isoform b [Hom... 30 0.55 gi|90193613 nuclear matrix transcription factor 4 isoform a [Hom... 30 0.55 gi|90193611 nuclear matrix transcription factor 4 isoform a [Hom... 30 0.55 gi|36054194 nuclear matrix transcription factor 4 isoform a [Hom... 30 0.55 gi|209180475 nuclear matrix transcription factor 4 isoform d [Ho... 30 0.55 gi|83779014 katanin p80 subunit B 1 [Homo sapiens] 30 0.55 gi|22749379 GRB2-binding adaptor protein, transmembrane [Homo sa... 29 0.71 gi|33667117 MICAL-like 2 isoform 1 [Homo sapiens] 29 0.71 gi|18426911 signal-regulatory protein alpha precursor [Homo sapi... 29 0.93 gi|91105767 signal-regulatory protein alpha precursor [Homo sapi... 29 0.93 gi|91105764 signal-regulatory protein alpha precursor [Homo sapi... 29 0.93 gi|169171487 PREDICTED: hypothetical protein [Homo sapiens] 28 1.2 gi|169171950 PREDICTED: hypothetical protein [Homo sapiens] 28 1.2 gi|169171214 PREDICTED: hypothetical protein [Homo sapiens] 28 1.2 gi|239509026 PREDICTED: hypothetical protein [Homo sapiens] 28 1.2 gi|73747885 ADAM metallopeptidase domain 12 isoform 1 preproprot... 28 1.2 gi|149944548 neurobeachin-like 2 [Homo sapiens] 28 1.2 gi|4505195 mitogen-activated protein kinase kinase kinase 11 [Ho... 28 1.2 gi|105553088 t-complex 10 [Homo sapiens] 28 1.2 >gi|48255926 NADH-ubiquinone oxidoreductase flavoprotein 3 isoform b precursor [Homo sapiens] Length = 108 Score = 221 bits (563), Expect = 1e-58 Identities = 108/108 (100%), Positives = 108/108 (100%) Query: 1 MAAPCLLRQGRAGALKTMLQEAQVFRGLASTVSLSAESGKSEKGQPQNSKKQSPPKKPAP 60 MAAPCLLRQGRAGALKTMLQEAQVFRGLASTVSLSAESGKSEKGQPQNSKKQSPPKKPAP Sbjct: 1 MAAPCLLRQGRAGALKTMLQEAQVFRGLASTVSLSAESGKSEKGQPQNSKKQSPPKKPAP 60 Query: 61 VPAEPFDNTTYKNLQHHDYSTYTFLDLNLELSKFRMPQPSSGRESPRH 108 VPAEPFDNTTYKNLQHHDYSTYTFLDLNLELSKFRMPQPSSGRESPRH Sbjct: 61 VPAEPFDNTTYKNLQHHDYSTYTFLDLNLELSKFRMPQPSSGRESPRH 108 >gi|48255924 NADH-ubiquinone oxidoreductase flavoprotein 3 isoform a precursor [Homo sapiens] Length = 473 Score = 114 bits (285), Expect = 2e-26 Identities = 56/84 (66%), Positives = 64/84 (76%), Gaps = 1/84 (1%) Query: 25 FRGLASTVSLSAESGKSEKGQPQNSKKQSPPKKPAPVPAEPFDNTTYKNLQHHDYSTYTF 84 F + + L AE G++ + + ++PAPVPAEPFDNTTYKNLQHHDYSTYTF Sbjct: 391 FHEKTAALKLEAE-GEAMEDAAAPGDDRGGTQEPAPVPAEPFDNTTYKNLQHHDYSTYTF 449 Query: 85 LDLNLELSKFRMPQPSSGRESPRH 108 LDLNLELSKFRMPQPSSGRESPRH Sbjct: 450 LDLNLELSKFRMPQPSSGRESPRH 473 Score = 111 bits (277), Expect = 1e-25 Identities = 56/56 (100%), Positives = 56/56 (100%) Query: 1 MAAPCLLRQGRAGALKTMLQEAQVFRGLASTVSLSAESGKSEKGQPQNSKKQSPPK 56 MAAPCLLRQGRAGALKTMLQEAQVFRGLASTVSLSAESGKSEKGQPQNSKKQSPPK Sbjct: 1 MAAPCLLRQGRAGALKTMLQEAQVFRGLASTVSLSAESGKSEKGQPQNSKKQSPPK 56 >gi|194239664 SHC (Src homology 2 domain containing) transforming protein 1 isoform 3 [Homo sapiens] Length = 584 Score = 37.7 bits (86), Expect = 0.002 Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 6/73 (8%) Query: 7 LRQGRA-GALKTMLQEAQVFRGLASTVSLSAESGKSEKGQPQNSKKQSPPKKPAPVPAEP 65 LR+G A GA + AQ L +T+ + G G P+ +KQ PP P P E Sbjct: 368 LREGAAPGAARPTAPNAQTPSHLGATLPVGQPVG----GDPE-VRKQMPPPPPCPAGREL 422 Query: 66 FDNTTYKNLQHHD 78 FD+ +Y N+Q+ D Sbjct: 423 FDDPSYVNVQNLD 435 >gi|32261324 SHC (Src homology 2 domain containing) transforming protein 1 isoform 2 [Homo sapiens] Length = 474 Score = 37.7 bits (86), Expect = 0.002 Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 6/73 (8%) Query: 7 LRQGRA-GALKTMLQEAQVFRGLASTVSLSAESGKSEKGQPQNSKKQSPPKKPAPVPAEP 65 LR+G A GA + AQ L +T+ + G G P+ +KQ PP P P E Sbjct: 258 LREGAAPGAARPTAPNAQTPSHLGATLPVGQPVG----GDPE-VRKQMPPPPPCPAGREL 312 Query: 66 FDNTTYKNLQHHD 78 FD+ +Y N+Q+ D Sbjct: 313 FDDPSYVNVQNLD 325 >gi|169214031 PREDICTED: hypothetical LOC646508 [Homo sapiens] Length = 560 Score = 34.7 bits (78), Expect = 0.017 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 7/67 (10%) Query: 13 GALKTMLQEAQVFRGLASTVSLSAESGKSE-------KGQPQNSKKQSPPKKPAPVPAEP 65 GAL+ +Q + GL S + ++ K Q+S+ Q+P K+PAPVP + Sbjct: 336 GALQPAMQALALGPGLKSQAEIKHPDADAKPRPQQVRKQCGQDSRTQAPDKEPAPVPTQT 395 Query: 66 FDNTTYK 72 F N K Sbjct: 396 FQNPAKK 402 >gi|239751865 PREDICTED: hypothetical LOC646508 [Homo sapiens] Length = 528 Score = 34.7 bits (78), Expect = 0.017 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 7/67 (10%) Query: 13 GALKTMLQEAQVFRGLASTVSLSAESGKSE-------KGQPQNSKKQSPPKKPAPVPAEP 65 GAL+ +Q + GL S + ++ K Q+S+ Q+P K+PAPVP + Sbjct: 304 GALQPAMQALALGPGLKSQAEIKHPDADAKPRPQQVRKQCGQDSRTQAPDKEPAPVPTQT 363 Query: 66 FDNTTYK 72 F N K Sbjct: 364 FQNPAKK 370 >gi|169213419 PREDICTED: hypothetical LOC646508 [Homo sapiens] Length = 560 Score = 34.7 bits (78), Expect = 0.017 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 7/67 (10%) Query: 13 GALKTMLQEAQVFRGLASTVSLSAESGKSE-------KGQPQNSKKQSPPKKPAPVPAEP 65 GAL+ +Q + GL S + ++ K Q+S+ Q+P K+PAPVP + Sbjct: 336 GALQPAMQALALGPGLKSQAEIKHPDADAKPRPQQVRKQCGQDSRTQAPDKEPAPVPTQT 395 Query: 66 FDNTTYK 72 F N K Sbjct: 396 FQNPAKK 402 >gi|52851437 transmembrane protein 62 [Homo sapiens] Length = 643 Score = 30.4 bits (67), Expect = 0.32 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%) Query: 44 GQPQNSKKQSPPKKPAPVPAEPFDNTTYKNLQHHDYSTYTFLDLN--LELSKF 94 GQP + +PP++P P P P D+ + LQ D F D ++L KF Sbjct: 30 GQPSPLPRPAPPRRPHPAPG-PGDSNIFWGLQISDIHLSRFRDPGRAVDLEKF 81 >gi|150417989 cyclin K isoform 1 [Homo sapiens] Length = 580 Score = 30.0 bits (66), Expect = 0.42 Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 9/43 (20%) Query: 32 VSLSAESGKSEKGQPQNSKKQSP---------PKKPAPVPAEP 65 V S S SE QPQ Q P PKKP+P P+ P Sbjct: 288 VQQSQPSQSSEPSQPQQKDPQQPAQQQQPAQQPKKPSPQPSSP 330 >gi|90193619 nuclear matrix transcription factor 4 isoform c [Homo sapiens] Length = 461 Score = 29.6 bits (65), Expect = 0.55 Identities = 24/93 (25%), Positives = 34/93 (36%), Gaps = 20/93 (21%) Query: 2 AAPCLLRQGRAGALKTMLQEAQVFRGLASTVSLSAESGKSEKGQPQNSKKQSPP------ 55 AA + Q +A A +AQ A + A + ++ Q Q ++Q PP Sbjct: 352 AAAAAVAQAQAQAQAQAQAQAQA---QAQAQASQASQQQQQQQQQQQQQQQQPPPHFQSP 408 Query: 56 -----------KKPAPVPAEPFDNTTYKNLQHH 77 P P P FD T YK +HH Sbjct: 409 GAAPQGGGGGDSNPNPPPQCSFDLTPYKTAEHH 441 >gi|90193617 nuclear matrix transcription factor 4 isoform b [Homo sapiens] Length = 500 Score = 29.6 bits (65), Expect = 0.55 Identities = 24/93 (25%), Positives = 34/93 (36%), Gaps = 20/93 (21%) Query: 2 AAPCLLRQGRAGALKTMLQEAQVFRGLASTVSLSAESGKSEKGQPQNSKKQSPP------ 55 AA + Q +A A +AQ A + A + ++ Q Q ++Q PP Sbjct: 391 AAAAAVAQAQAQAQAQAQAQAQA---QAQAQASQASQQQQQQQQQQQQQQQQPPPHFQSP 447 Query: 56 -----------KKPAPVPAEPFDNTTYKNLQHH 77 P P P FD T YK +HH Sbjct: 448 GAAPQGGGGGDSNPNPPPQCSFDLTPYKTAEHH 480 >gi|90193615 nuclear matrix transcription factor 4 isoform b [Homo sapiens] Length = 500 Score = 29.6 bits (65), Expect = 0.55 Identities = 24/93 (25%), Positives = 34/93 (36%), Gaps = 20/93 (21%) Query: 2 AAPCLLRQGRAGALKTMLQEAQVFRGLASTVSLSAESGKSEKGQPQNSKKQSPP------ 55 AA + Q +A A +AQ A + A + ++ Q Q ++Q PP Sbjct: 391 AAAAAVAQAQAQAQAQAQAQAQA---QAQAQASQASQQQQQQQQQQQQQQQQPPPHFQSP 447 Query: 56 -----------KKPAPVPAEPFDNTTYKNLQHH 77 P P P FD T YK +HH Sbjct: 448 GAAPQGGGGGDSNPNPPPQCSFDLTPYKTAEHH 480 >gi|90193613 nuclear matrix transcription factor 4 isoform a [Homo sapiens] Length = 516 Score = 29.6 bits (65), Expect = 0.55 Identities = 24/93 (25%), Positives = 34/93 (36%), Gaps = 20/93 (21%) Query: 2 AAPCLLRQGRAGALKTMLQEAQVFRGLASTVSLSAESGKSEKGQPQNSKKQSPP------ 55 AA + Q +A A +AQ A + A + ++ Q Q ++Q PP Sbjct: 407 AAAAAVAQAQAQAQAQAQAQAQA---QAQAQASQASQQQQQQQQQQQQQQQQPPPHFQSP 463 Query: 56 -----------KKPAPVPAEPFDNTTYKNLQHH 77 P P P FD T YK +HH Sbjct: 464 GAAPQGGGGGDSNPNPPPQCSFDLTPYKTAEHH 496 >gi|90193611 nuclear matrix transcription factor 4 isoform a [Homo sapiens] Length = 516 Score = 29.6 bits (65), Expect = 0.55 Identities = 24/93 (25%), Positives = 34/93 (36%), Gaps = 20/93 (21%) Query: 2 AAPCLLRQGRAGALKTMLQEAQVFRGLASTVSLSAESGKSEKGQPQNSKKQSPP------ 55 AA + Q +A A +AQ A + A + ++ Q Q ++Q PP Sbjct: 407 AAAAAVAQAQAQAQAQAQAQAQA---QAQAQASQASQQQQQQQQQQQQQQQQPPPHFQSP 463 Query: 56 -----------KKPAPVPAEPFDNTTYKNLQHH 77 P P P FD T YK +HH Sbjct: 464 GAAPQGGGGGDSNPNPPPQCSFDLTPYKTAEHH 496 >gi|36054194 nuclear matrix transcription factor 4 isoform a [Homo sapiens] Length = 516 Score = 29.6 bits (65), Expect = 0.55 Identities = 24/93 (25%), Positives = 34/93 (36%), Gaps = 20/93 (21%) Query: 2 AAPCLLRQGRAGALKTMLQEAQVFRGLASTVSLSAESGKSEKGQPQNSKKQSPP------ 55 AA + Q +A A +AQ A + A + ++ Q Q ++Q PP Sbjct: 407 AAAAAVAQAQAQAQAQAQAQAQA---QAQAQASQASQQQQQQQQQQQQQQQQPPPHFQSP 463 Query: 56 -----------KKPAPVPAEPFDNTTYKNLQHH 77 P P P FD T YK +HH Sbjct: 464 GAAPQGGGGGDSNPNPPPQCSFDLTPYKTAEHH 496 >gi|209180475 nuclear matrix transcription factor 4 isoform d [Homo sapiens] Length = 577 Score = 29.6 bits (65), Expect = 0.55 Identities = 24/93 (25%), Positives = 34/93 (36%), Gaps = 20/93 (21%) Query: 2 AAPCLLRQGRAGALKTMLQEAQVFRGLASTVSLSAESGKSEKGQPQNSKKQSPP------ 55 AA + Q +A A +AQ A + A + ++ Q Q ++Q PP Sbjct: 468 AAAAAVAQAQAQAQAQAQAQAQA---QAQAQASQASQQQQQQQQQQQQQQQQPPPHFQSP 524 Query: 56 -----------KKPAPVPAEPFDNTTYKNLQHH 77 P P P FD T YK +HH Sbjct: 525 GAAPQGGGGGDSNPNPPPQCSFDLTPYKTAEHH 557 >gi|83779014 katanin p80 subunit B 1 [Homo sapiens] Length = 655 Score = 29.6 bits (65), Expect = 0.55 Identities = 11/24 (45%), Positives = 17/24 (70%) Query: 45 QPQNSKKQSPPKKPAPVPAEPFDN 68 QP+NS ++PP++ P PA P D+ Sbjct: 387 QPKNSISRTPPRRSEPFPAPPEDD 410 >gi|22749379 GRB2-binding adaptor protein, transmembrane [Homo sapiens] Length = 157 Score = 29.3 bits (64), Expect = 0.71 Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 9/79 (11%) Query: 27 GLASTVSLSAESGKSE-KGQPQNSKKQS----PPKKPAPVPAEPFDNTTYKNLQHHDYST 81 GL +S+ + KS +G + ++ PPK E ++NT N + H Y Sbjct: 68 GLRHEISVETQDHKSAVRGNNTHDNYENVEAGPPKAKGKTDKELYENTGQSNFEEHIYGN 127 Query: 82 YTFLDLNLELSKFRMPQPS 100 T D F+ P+PS Sbjct: 128 ETSSD----YYNFQKPRPS 142 >gi|33667117 MICAL-like 2 isoform 1 [Homo sapiens] Length = 904 Score = 29.3 bits (64), Expect = 0.71 Identities = 16/43 (37%), Positives = 20/43 (46%) Query: 37 ESGKSEKGQPQNSKKQSPPKKPAPVPAEPFDNTTYKNLQHHDY 79 +S K E+ +P K P PA VPA P + T H DY Sbjct: 692 QSWKEEEKKPHLQGKPGRPLSPANVPALPGETVTSPVRLHPDY 734 >gi|18426911 signal-regulatory protein alpha precursor [Homo sapiens] Length = 504 Score = 28.9 bits (63), Expect = 0.93 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 6/38 (15%) Query: 56 KKPAPVPAEPFDNTTYKNLQ------HHDYSTYTFLDL 87 KKPAP AEP ++T Y ++Q D TY LD+ Sbjct: 438 KKPAPQAAEPNNHTEYASIQTSPQPASEDTLTYADLDM 475 >gi|91105767 signal-regulatory protein alpha precursor [Homo sapiens] Length = 504 Score = 28.9 bits (63), Expect = 0.93 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 6/38 (15%) Query: 56 KKPAPVPAEPFDNTTYKNLQ------HHDYSTYTFLDL 87 KKPAP AEP ++T Y ++Q D TY LD+ Sbjct: 438 KKPAPQAAEPNNHTEYASIQTSPQPASEDTLTYADLDM 475 >gi|91105764 signal-regulatory protein alpha precursor [Homo sapiens] Length = 504 Score = 28.9 bits (63), Expect = 0.93 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 6/38 (15%) Query: 56 KKPAPVPAEPFDNTTYKNLQ------HHDYSTYTFLDL 87 KKPAP AEP ++T Y ++Q D TY LD+ Sbjct: 438 KKPAPQAAEPNNHTEYASIQTSPQPASEDTLTYADLDM 475 >gi|169171487 PREDICTED: hypothetical protein [Homo sapiens] Length = 176 Score = 28.5 bits (62), Expect = 1.2 Identities = 11/26 (42%), Positives = 15/26 (57%) Query: 46 PQNSKKQSPPKKPAPVPAEPFDNTTY 71 P + K +P K P+PVP PF + Y Sbjct: 64 PPPAPKSAPSKVPSPVPEAPFQSEMY 89 >gi|169171950 PREDICTED: hypothetical protein [Homo sapiens] Length = 176 Score = 28.5 bits (62), Expect = 1.2 Identities = 11/26 (42%), Positives = 15/26 (57%) Query: 46 PQNSKKQSPPKKPAPVPAEPFDNTTY 71 P + K +P K P+PVP PF + Y Sbjct: 64 PPPAPKSAPSKVPSPVPEAPFQSEMY 89 >gi|169171214 PREDICTED: hypothetical protein [Homo sapiens] Length = 176 Score = 28.5 bits (62), Expect = 1.2 Identities = 11/26 (42%), Positives = 15/26 (57%) Query: 46 PQNSKKQSPPKKPAPVPAEPFDNTTY 71 P + K +P K P+PVP PF + Y Sbjct: 64 PPPAPKSAPSKVPSPVPEAPFQSEMY 89 >gi|239509026 PREDICTED: hypothetical protein [Homo sapiens] Length = 176 Score = 28.5 bits (62), Expect = 1.2 Identities = 11/26 (42%), Positives = 15/26 (57%) Query: 46 PQNSKKQSPPKKPAPVPAEPFDNTTY 71 P + K +P K P+PVP PF + Y Sbjct: 64 PPPAPKSAPSKVPSPVPEAPFQSEMY 89 >gi|73747885 ADAM metallopeptidase domain 12 isoform 1 preproprotein [Homo sapiens] Length = 909 Score = 28.5 bits (62), Expect = 1.2 Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 5/63 (7%) Query: 45 QPQNSKKQSPPKKPAPVPAEPFDNTTYKNLQHHDYSTYTFLDLNLELSKFRMPQPSSGRE 104 Q Q + K +PP+K P+PA+P TT L H T + L L+ R P P + Sbjct: 844 QAQGTCKPNPPQK--PLPADPLARTT--RLTHALARTPGQWETGLRLAPLR-PAPQYPHQ 898 Query: 105 SPR 107 PR Sbjct: 899 VPR 901 >gi|149944548 neurobeachin-like 2 [Homo sapiens] Length = 2754 Score = 28.5 bits (62), Expect = 1.2 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%) Query: 35 SAESGKSEKGQPQN--SKKQSPPKKPAPVPAEPFD 67 +A +G P++ S K +PPK P PAEP D Sbjct: 1296 AATAGSPPPSSPESPTSPKPAPPKPPTESPAEPSD 1330 >gi|4505195 mitogen-activated protein kinase kinase kinase 11 [Homo sapiens] Length = 847 Score = 28.5 bits (62), Expect = 1.2 Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 1/60 (1%) Query: 4 PCLLRQGRAGALKTMLQEAQVFRGLASTVSLSAESGKSEKGQPQNSKKQSPPKKPAPVPA 63 P +G + ++Q A + RG A SL G P + +SP P P PA Sbjct: 626 PVPAERGSSSGTPKLIQRA-LLRGTALLASLGLGRDLQPPGGPGRERGESPTTPPTPTPA 684 >gi|105553088 t-complex 10 [Homo sapiens] Length = 326 Score = 28.5 bits (62), Expect = 1.2 Identities = 29/104 (27%), Positives = 40/104 (38%), Gaps = 17/104 (16%) Query: 10 GRAGALKTMLQEAQVFRGLA--STVSLSAESGKSEKGQPQNSKKQSPP-----KKPAPVP 62 GR T+L + LA +SL E S K PQ +++SPP + PAP Sbjct: 117 GRKSQSATLLGQRWSSNHLAPPKPMSLKTERINSGKTPPQEDREKSPPGRRQDRSPAPT- 175 Query: 63 AEPFDNTTYKNLQHHDYSTYTFLDLNLELSKFRMPQPSSGRESP 106 P + + D + R PQ S GR+SP Sbjct: 176 GRPTPGAERRGVSE---------DGKIMHPSSRSPQNSGGRKSP 210 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.311 0.126 0.362 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 4,730,041 Number of Sequences: 37866 Number of extensions: 223464 Number of successful extensions: 1720 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 79 Number of HSP's successfully gapped in prelim test: 58 Number of HSP's that attempted gapping in prelim test: 1573 Number of HSP's gapped (non-prelim): 200 length of query: 108 length of database: 18,247,518 effective HSP length: 78 effective length of query: 30 effective length of database: 15,293,970 effective search space: 458819100 effective search space used: 458819100 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.