Search of human proteins with 48255926

Search of human proteins with 48255926

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|48255926 NADH-ubiquinone oxidoreductase flavoprotein 3
isoform b precursor [Homo sapiens]
         (108 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|48255926 NADH-ubiquinone oxidoreductase flavoprotein 3 isofor...   221   1e-58
gi|48255924 NADH-ubiquinone oxidoreductase flavoprotein 3 isofor...   114   2e-26
gi|194239664 SHC (Src homology 2 domain containing) transforming...    38   0.002
gi|32261324 SHC (Src homology 2 domain containing) transforming ...    38   0.002
gi|169214031 PREDICTED: hypothetical LOC646508 [Homo sapiens]          35   0.017
gi|239751865 PREDICTED: hypothetical LOC646508 [Homo sapiens]          35   0.017
gi|169213419 PREDICTED: hypothetical LOC646508 [Homo sapiens]          35   0.017
gi|52851437 transmembrane protein 62 [Homo sapiens]                    30   0.32 
gi|150417989 cyclin K isoform 1 [Homo sapiens]                         30   0.42 
gi|90193619 nuclear matrix transcription factor 4 isoform c [Hom...    30   0.55 
gi|90193617 nuclear matrix transcription factor 4 isoform b [Hom...    30   0.55 
gi|90193615 nuclear matrix transcription factor 4 isoform b [Hom...    30   0.55 
gi|90193613 nuclear matrix transcription factor 4 isoform a [Hom...    30   0.55 
gi|90193611 nuclear matrix transcription factor 4 isoform a [Hom...    30   0.55 
gi|36054194 nuclear matrix transcription factor 4 isoform a [Hom...    30   0.55 
gi|209180475 nuclear matrix transcription factor 4 isoform d [Ho...    30   0.55 
gi|83779014 katanin p80 subunit B 1 [Homo sapiens]                     30   0.55 
gi|22749379 GRB2-binding adaptor protein, transmembrane [Homo sa...    29   0.71 
gi|33667117 MICAL-like 2 isoform 1 [Homo sapiens]                      29   0.71 
gi|18426911 signal-regulatory protein alpha precursor [Homo sapi...    29   0.93 
gi|91105767 signal-regulatory protein alpha precursor [Homo sapi...    29   0.93 
gi|91105764 signal-regulatory protein alpha precursor [Homo sapi...    29   0.93 
gi|169171487 PREDICTED: hypothetical protein [Homo sapiens]            28   1.2  
gi|169171950 PREDICTED: hypothetical protein [Homo sapiens]            28   1.2  
gi|169171214 PREDICTED: hypothetical protein [Homo sapiens]            28   1.2  
gi|239509026 PREDICTED: hypothetical protein [Homo sapiens]            28   1.2  
gi|73747885 ADAM metallopeptidase domain 12 isoform 1 preproprot...    28   1.2  
gi|149944548 neurobeachin-like 2 [Homo sapiens]                        28   1.2  
gi|4505195 mitogen-activated protein kinase kinase kinase 11 [Ho...    28   1.2  
gi|105553088 t-complex 10 [Homo sapiens]                               28   1.2  

>gi|48255926 NADH-ubiquinone oxidoreductase flavoprotein 3 isoform b
           precursor [Homo sapiens]
          Length = 108

 Score =  221 bits (563), Expect = 1e-58
 Identities = 108/108 (100%), Positives = 108/108 (100%)

Query: 1   MAAPCLLRQGRAGALKTMLQEAQVFRGLASTVSLSAESGKSEKGQPQNSKKQSPPKKPAP 60
           MAAPCLLRQGRAGALKTMLQEAQVFRGLASTVSLSAESGKSEKGQPQNSKKQSPPKKPAP
Sbjct: 1   MAAPCLLRQGRAGALKTMLQEAQVFRGLASTVSLSAESGKSEKGQPQNSKKQSPPKKPAP 60

Query: 61  VPAEPFDNTTYKNLQHHDYSTYTFLDLNLELSKFRMPQPSSGRESPRH 108
           VPAEPFDNTTYKNLQHHDYSTYTFLDLNLELSKFRMPQPSSGRESPRH
Sbjct: 61  VPAEPFDNTTYKNLQHHDYSTYTFLDLNLELSKFRMPQPSSGRESPRH 108


>gi|48255924 NADH-ubiquinone oxidoreductase flavoprotein 3 isoform a
           precursor [Homo sapiens]
          Length = 473

 Score =  114 bits (285), Expect = 2e-26
 Identities = 56/84 (66%), Positives = 64/84 (76%), Gaps = 1/84 (1%)

Query: 25  FRGLASTVSLSAESGKSEKGQPQNSKKQSPPKKPAPVPAEPFDNTTYKNLQHHDYSTYTF 84
           F    + + L AE G++ +        +   ++PAPVPAEPFDNTTYKNLQHHDYSTYTF
Sbjct: 391 FHEKTAALKLEAE-GEAMEDAAAPGDDRGGTQEPAPVPAEPFDNTTYKNLQHHDYSTYTF 449

Query: 85  LDLNLELSKFRMPQPSSGRESPRH 108
           LDLNLELSKFRMPQPSSGRESPRH
Sbjct: 450 LDLNLELSKFRMPQPSSGRESPRH 473



 Score =  111 bits (277), Expect = 1e-25
 Identities = 56/56 (100%), Positives = 56/56 (100%)

Query: 1  MAAPCLLRQGRAGALKTMLQEAQVFRGLASTVSLSAESGKSEKGQPQNSKKQSPPK 56
          MAAPCLLRQGRAGALKTMLQEAQVFRGLASTVSLSAESGKSEKGQPQNSKKQSPPK
Sbjct: 1  MAAPCLLRQGRAGALKTMLQEAQVFRGLASTVSLSAESGKSEKGQPQNSKKQSPPK 56


>gi|194239664 SHC (Src homology 2 domain containing) transforming
           protein 1 isoform 3 [Homo sapiens]
          Length = 584

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 6/73 (8%)

Query: 7   LRQGRA-GALKTMLQEAQVFRGLASTVSLSAESGKSEKGQPQNSKKQSPPKKPAPVPAEP 65
           LR+G A GA +     AQ    L +T+ +    G    G P+  +KQ PP  P P   E 
Sbjct: 368 LREGAAPGAARPTAPNAQTPSHLGATLPVGQPVG----GDPE-VRKQMPPPPPCPAGREL 422

Query: 66  FDNTTYKNLQHHD 78
           FD+ +Y N+Q+ D
Sbjct: 423 FDDPSYVNVQNLD 435


>gi|32261324 SHC (Src homology 2 domain containing) transforming
           protein 1 isoform 2 [Homo sapiens]
          Length = 474

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 6/73 (8%)

Query: 7   LRQGRA-GALKTMLQEAQVFRGLASTVSLSAESGKSEKGQPQNSKKQSPPKKPAPVPAEP 65
           LR+G A GA +     AQ    L +T+ +    G    G P+  +KQ PP  P P   E 
Sbjct: 258 LREGAAPGAARPTAPNAQTPSHLGATLPVGQPVG----GDPE-VRKQMPPPPPCPAGREL 312

Query: 66  FDNTTYKNLQHHD 78
           FD+ +Y N+Q+ D
Sbjct: 313 FDDPSYVNVQNLD 325


>gi|169214031 PREDICTED: hypothetical LOC646508 [Homo sapiens]
          Length = 560

 Score = 34.7 bits (78), Expect = 0.017
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 7/67 (10%)

Query: 13  GALKTMLQEAQVFRGLASTVSLSAESGKSE-------KGQPQNSKKQSPPKKPAPVPAEP 65
           GAL+  +Q   +  GL S   +      ++       K   Q+S+ Q+P K+PAPVP + 
Sbjct: 336 GALQPAMQALALGPGLKSQAEIKHPDADAKPRPQQVRKQCGQDSRTQAPDKEPAPVPTQT 395

Query: 66  FDNTTYK 72
           F N   K
Sbjct: 396 FQNPAKK 402


>gi|239751865 PREDICTED: hypothetical LOC646508 [Homo sapiens]
          Length = 528

 Score = 34.7 bits (78), Expect = 0.017
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 7/67 (10%)

Query: 13  GALKTMLQEAQVFRGLASTVSLSAESGKSE-------KGQPQNSKKQSPPKKPAPVPAEP 65
           GAL+  +Q   +  GL S   +      ++       K   Q+S+ Q+P K+PAPVP + 
Sbjct: 304 GALQPAMQALALGPGLKSQAEIKHPDADAKPRPQQVRKQCGQDSRTQAPDKEPAPVPTQT 363

Query: 66  FDNTTYK 72
           F N   K
Sbjct: 364 FQNPAKK 370


>gi|169213419 PREDICTED: hypothetical LOC646508 [Homo sapiens]
          Length = 560

 Score = 34.7 bits (78), Expect = 0.017
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 7/67 (10%)

Query: 13  GALKTMLQEAQVFRGLASTVSLSAESGKSE-------KGQPQNSKKQSPPKKPAPVPAEP 65
           GAL+  +Q   +  GL S   +      ++       K   Q+S+ Q+P K+PAPVP + 
Sbjct: 336 GALQPAMQALALGPGLKSQAEIKHPDADAKPRPQQVRKQCGQDSRTQAPDKEPAPVPTQT 395

Query: 66  FDNTTYK 72
           F N   K
Sbjct: 396 FQNPAKK 402


>gi|52851437 transmembrane protein 62 [Homo sapiens]
          Length = 643

 Score = 30.4 bits (67), Expect = 0.32
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)

Query: 44 GQPQNSKKQSPPKKPAPVPAEPFDNTTYKNLQHHDYSTYTFLDLN--LELSKF 94
          GQP    + +PP++P P P  P D+  +  LQ  D     F D    ++L KF
Sbjct: 30 GQPSPLPRPAPPRRPHPAPG-PGDSNIFWGLQISDIHLSRFRDPGRAVDLEKF 81


>gi|150417989 cyclin K isoform 1 [Homo sapiens]
          Length = 580

 Score = 30.0 bits (66), Expect = 0.42
 Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 9/43 (20%)

Query: 32  VSLSAESGKSEKGQPQNSKKQSP---------PKKPAPVPAEP 65
           V  S  S  SE  QPQ    Q P         PKKP+P P+ P
Sbjct: 288 VQQSQPSQSSEPSQPQQKDPQQPAQQQQPAQQPKKPSPQPSSP 330


>gi|90193619 nuclear matrix transcription factor 4 isoform c [Homo
           sapiens]
          Length = 461

 Score = 29.6 bits (65), Expect = 0.55
 Identities = 24/93 (25%), Positives = 34/93 (36%), Gaps = 20/93 (21%)

Query: 2   AAPCLLRQGRAGALKTMLQEAQVFRGLASTVSLSAESGKSEKGQPQNSKKQSPP------ 55
           AA   + Q +A A      +AQ     A   +  A   + ++ Q Q  ++Q PP      
Sbjct: 352 AAAAAVAQAQAQAQAQAQAQAQA---QAQAQASQASQQQQQQQQQQQQQQQQPPPHFQSP 408

Query: 56  -----------KKPAPVPAEPFDNTTYKNLQHH 77
                        P P P   FD T YK  +HH
Sbjct: 409 GAAPQGGGGGDSNPNPPPQCSFDLTPYKTAEHH 441


>gi|90193617 nuclear matrix transcription factor 4 isoform b [Homo
           sapiens]
          Length = 500

 Score = 29.6 bits (65), Expect = 0.55
 Identities = 24/93 (25%), Positives = 34/93 (36%), Gaps = 20/93 (21%)

Query: 2   AAPCLLRQGRAGALKTMLQEAQVFRGLASTVSLSAESGKSEKGQPQNSKKQSPP------ 55
           AA   + Q +A A      +AQ     A   +  A   + ++ Q Q  ++Q PP      
Sbjct: 391 AAAAAVAQAQAQAQAQAQAQAQA---QAQAQASQASQQQQQQQQQQQQQQQQPPPHFQSP 447

Query: 56  -----------KKPAPVPAEPFDNTTYKNLQHH 77
                        P P P   FD T YK  +HH
Sbjct: 448 GAAPQGGGGGDSNPNPPPQCSFDLTPYKTAEHH 480


>gi|90193615 nuclear matrix transcription factor 4 isoform b [Homo
           sapiens]
          Length = 500

 Score = 29.6 bits (65), Expect = 0.55
 Identities = 24/93 (25%), Positives = 34/93 (36%), Gaps = 20/93 (21%)

Query: 2   AAPCLLRQGRAGALKTMLQEAQVFRGLASTVSLSAESGKSEKGQPQNSKKQSPP------ 55
           AA   + Q +A A      +AQ     A   +  A   + ++ Q Q  ++Q PP      
Sbjct: 391 AAAAAVAQAQAQAQAQAQAQAQA---QAQAQASQASQQQQQQQQQQQQQQQQPPPHFQSP 447

Query: 56  -----------KKPAPVPAEPFDNTTYKNLQHH 77
                        P P P   FD T YK  +HH
Sbjct: 448 GAAPQGGGGGDSNPNPPPQCSFDLTPYKTAEHH 480


>gi|90193613 nuclear matrix transcription factor 4 isoform a [Homo
           sapiens]
          Length = 516

 Score = 29.6 bits (65), Expect = 0.55
 Identities = 24/93 (25%), Positives = 34/93 (36%), Gaps = 20/93 (21%)

Query: 2   AAPCLLRQGRAGALKTMLQEAQVFRGLASTVSLSAESGKSEKGQPQNSKKQSPP------ 55
           AA   + Q +A A      +AQ     A   +  A   + ++ Q Q  ++Q PP      
Sbjct: 407 AAAAAVAQAQAQAQAQAQAQAQA---QAQAQASQASQQQQQQQQQQQQQQQQPPPHFQSP 463

Query: 56  -----------KKPAPVPAEPFDNTTYKNLQHH 77
                        P P P   FD T YK  +HH
Sbjct: 464 GAAPQGGGGGDSNPNPPPQCSFDLTPYKTAEHH 496


>gi|90193611 nuclear matrix transcription factor 4 isoform a [Homo
           sapiens]
          Length = 516

 Score = 29.6 bits (65), Expect = 0.55
 Identities = 24/93 (25%), Positives = 34/93 (36%), Gaps = 20/93 (21%)

Query: 2   AAPCLLRQGRAGALKTMLQEAQVFRGLASTVSLSAESGKSEKGQPQNSKKQSPP------ 55
           AA   + Q +A A      +AQ     A   +  A   + ++ Q Q  ++Q PP      
Sbjct: 407 AAAAAVAQAQAQAQAQAQAQAQA---QAQAQASQASQQQQQQQQQQQQQQQQPPPHFQSP 463

Query: 56  -----------KKPAPVPAEPFDNTTYKNLQHH 77
                        P P P   FD T YK  +HH
Sbjct: 464 GAAPQGGGGGDSNPNPPPQCSFDLTPYKTAEHH 496


>gi|36054194 nuclear matrix transcription factor 4 isoform a [Homo
           sapiens]
          Length = 516

 Score = 29.6 bits (65), Expect = 0.55
 Identities = 24/93 (25%), Positives = 34/93 (36%), Gaps = 20/93 (21%)

Query: 2   AAPCLLRQGRAGALKTMLQEAQVFRGLASTVSLSAESGKSEKGQPQNSKKQSPP------ 55
           AA   + Q +A A      +AQ     A   +  A   + ++ Q Q  ++Q PP      
Sbjct: 407 AAAAAVAQAQAQAQAQAQAQAQA---QAQAQASQASQQQQQQQQQQQQQQQQPPPHFQSP 463

Query: 56  -----------KKPAPVPAEPFDNTTYKNLQHH 77
                        P P P   FD T YK  +HH
Sbjct: 464 GAAPQGGGGGDSNPNPPPQCSFDLTPYKTAEHH 496


>gi|209180475 nuclear matrix transcription factor 4 isoform d [Homo
           sapiens]
          Length = 577

 Score = 29.6 bits (65), Expect = 0.55
 Identities = 24/93 (25%), Positives = 34/93 (36%), Gaps = 20/93 (21%)

Query: 2   AAPCLLRQGRAGALKTMLQEAQVFRGLASTVSLSAESGKSEKGQPQNSKKQSPP------ 55
           AA   + Q +A A      +AQ     A   +  A   + ++ Q Q  ++Q PP      
Sbjct: 468 AAAAAVAQAQAQAQAQAQAQAQA---QAQAQASQASQQQQQQQQQQQQQQQQPPPHFQSP 524

Query: 56  -----------KKPAPVPAEPFDNTTYKNLQHH 77
                        P P P   FD T YK  +HH
Sbjct: 525 GAAPQGGGGGDSNPNPPPQCSFDLTPYKTAEHH 557


>gi|83779014 katanin p80 subunit B 1 [Homo sapiens]
          Length = 655

 Score = 29.6 bits (65), Expect = 0.55
 Identities = 11/24 (45%), Positives = 17/24 (70%)

Query: 45  QPQNSKKQSPPKKPAPVPAEPFDN 68
           QP+NS  ++PP++  P PA P D+
Sbjct: 387 QPKNSISRTPPRRSEPFPAPPEDD 410


>gi|22749379 GRB2-binding adaptor protein, transmembrane [Homo
           sapiens]
          Length = 157

 Score = 29.3 bits (64), Expect = 0.71
 Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 9/79 (11%)

Query: 27  GLASTVSLSAESGKSE-KGQPQNSKKQS----PPKKPAPVPAEPFDNTTYKNLQHHDYST 81
           GL   +S+  +  KS  +G   +   ++    PPK       E ++NT   N + H Y  
Sbjct: 68  GLRHEISVETQDHKSAVRGNNTHDNYENVEAGPPKAKGKTDKELYENTGQSNFEEHIYGN 127

Query: 82  YTFLDLNLELSKFRMPQPS 100
            T  D       F+ P+PS
Sbjct: 128 ETSSD----YYNFQKPRPS 142


>gi|33667117 MICAL-like 2 isoform 1 [Homo sapiens]
          Length = 904

 Score = 29.3 bits (64), Expect = 0.71
 Identities = 16/43 (37%), Positives = 20/43 (46%)

Query: 37  ESGKSEKGQPQNSKKQSPPKKPAPVPAEPFDNTTYKNLQHHDY 79
           +S K E+ +P    K   P  PA VPA P +  T     H DY
Sbjct: 692 QSWKEEEKKPHLQGKPGRPLSPANVPALPGETVTSPVRLHPDY 734


>gi|18426911 signal-regulatory protein alpha precursor [Homo
           sapiens]
          Length = 504

 Score = 28.9 bits (63), Expect = 0.93
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 6/38 (15%)

Query: 56  KKPAPVPAEPFDNTTYKNLQ------HHDYSTYTFLDL 87
           KKPAP  AEP ++T Y ++Q        D  TY  LD+
Sbjct: 438 KKPAPQAAEPNNHTEYASIQTSPQPASEDTLTYADLDM 475


>gi|91105767 signal-regulatory protein alpha precursor [Homo
           sapiens]
          Length = 504

 Score = 28.9 bits (63), Expect = 0.93
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 6/38 (15%)

Query: 56  KKPAPVPAEPFDNTTYKNLQ------HHDYSTYTFLDL 87
           KKPAP  AEP ++T Y ++Q        D  TY  LD+
Sbjct: 438 KKPAPQAAEPNNHTEYASIQTSPQPASEDTLTYADLDM 475


>gi|91105764 signal-regulatory protein alpha precursor [Homo
           sapiens]
          Length = 504

 Score = 28.9 bits (63), Expect = 0.93
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 6/38 (15%)

Query: 56  KKPAPVPAEPFDNTTYKNLQ------HHDYSTYTFLDL 87
           KKPAP  AEP ++T Y ++Q        D  TY  LD+
Sbjct: 438 KKPAPQAAEPNNHTEYASIQTSPQPASEDTLTYADLDM 475


>gi|169171487 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 176

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 11/26 (42%), Positives = 15/26 (57%)

Query: 46 PQNSKKQSPPKKPAPVPAEPFDNTTY 71
          P  + K +P K P+PVP  PF +  Y
Sbjct: 64 PPPAPKSAPSKVPSPVPEAPFQSEMY 89


>gi|169171950 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 176

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 11/26 (42%), Positives = 15/26 (57%)

Query: 46 PQNSKKQSPPKKPAPVPAEPFDNTTY 71
          P  + K +P K P+PVP  PF +  Y
Sbjct: 64 PPPAPKSAPSKVPSPVPEAPFQSEMY 89


>gi|169171214 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 176

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 11/26 (42%), Positives = 15/26 (57%)

Query: 46 PQNSKKQSPPKKPAPVPAEPFDNTTY 71
          P  + K +P K P+PVP  PF +  Y
Sbjct: 64 PPPAPKSAPSKVPSPVPEAPFQSEMY 89


>gi|239509026 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 176

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 11/26 (42%), Positives = 15/26 (57%)

Query: 46 PQNSKKQSPPKKPAPVPAEPFDNTTY 71
          P  + K +P K P+PVP  PF +  Y
Sbjct: 64 PPPAPKSAPSKVPSPVPEAPFQSEMY 89


>gi|73747885 ADAM metallopeptidase domain 12 isoform 1 preproprotein
           [Homo sapiens]
          Length = 909

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 5/63 (7%)

Query: 45  QPQNSKKQSPPKKPAPVPAEPFDNTTYKNLQHHDYSTYTFLDLNLELSKFRMPQPSSGRE 104
           Q Q + K +PP+K  P+PA+P   TT   L H    T    +  L L+  R P P    +
Sbjct: 844 QAQGTCKPNPPQK--PLPADPLARTT--RLTHALARTPGQWETGLRLAPLR-PAPQYPHQ 898

Query: 105 SPR 107
            PR
Sbjct: 899 VPR 901


>gi|149944548 neurobeachin-like 2 [Homo sapiens]
          Length = 2754

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)

Query: 35   SAESGKSEKGQPQN--SKKQSPPKKPAPVPAEPFD 67
            +A +G      P++  S K +PPK P   PAEP D
Sbjct: 1296 AATAGSPPPSSPESPTSPKPAPPKPPTESPAEPSD 1330


>gi|4505195 mitogen-activated protein kinase kinase kinase 11 [Homo
           sapiens]
          Length = 847

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 1/60 (1%)

Query: 4   PCLLRQGRAGALKTMLQEAQVFRGLASTVSLSAESGKSEKGQPQNSKKQSPPKKPAPVPA 63
           P    +G +     ++Q A + RG A   SL         G P   + +SP   P P PA
Sbjct: 626 PVPAERGSSSGTPKLIQRA-LLRGTALLASLGLGRDLQPPGGPGRERGESPTTPPTPTPA 684


>gi|105553088 t-complex 10 [Homo sapiens]
          Length = 326

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 29/104 (27%), Positives = 40/104 (38%), Gaps = 17/104 (16%)

Query: 10  GRAGALKTMLQEAQVFRGLA--STVSLSAESGKSEKGQPQNSKKQSPP-----KKPAPVP 62
           GR     T+L +      LA    +SL  E   S K  PQ  +++SPP     + PAP  
Sbjct: 117 GRKSQSATLLGQRWSSNHLAPPKPMSLKTERINSGKTPPQEDREKSPPGRRQDRSPAPT- 175

Query: 63  AEPFDNTTYKNLQHHDYSTYTFLDLNLELSKFRMPQPSSGRESP 106
             P      + +           D  +     R PQ S GR+SP
Sbjct: 176 GRPTPGAERRGVSE---------DGKIMHPSSRSPQNSGGRKSP 210


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.311    0.126    0.362 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,730,041
Number of Sequences: 37866
Number of extensions: 223464
Number of successful extensions: 1720
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 58
Number of HSP's that attempted gapping in prelim test: 1573
Number of HSP's gapped (non-prelim): 200
length of query: 108
length of database: 18,247,518
effective HSP length: 78
effective length of query: 30
effective length of database: 15,293,970
effective search space: 458819100
effective search space used: 458819100
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.