Search of human proteins with 4759098

Search of human proteins with 4759098

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4759098 splicing factor, arginine/serine-rich 10 [Homo
sapiens]
         (288 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4759098 splicing factor, arginine/serine-rich 10 [Homo sapiens]    592   e-169
gi|9558733 transformer-2 alpha [Homo sapiens]                         357   5e-99
gi|4502847 cold inducible RNA binding protein [Homo sapiens]          107   1e-23
gi|5803137 RNA binding motif protein 3 [Homo sapiens]                  88   8e-18
gi|16905517 FUS interacting protein (serine-arginine rich) 1 iso...    85   6e-17
gi|5730079 FUS interacting protein (serine-arginine rich) 1 isof...    84   1e-16
gi|169161980 PREDICTED: similar to FUS interacting protein (seri...    83   3e-16
gi|47271443 splicing factor, arginine/serine-rich 2 [Homo sapiens]     82   4e-16
gi|6857826 RNA-binding protein S1, serine-rich domain [Homo sapi...    82   7e-16
gi|18379334 RNA-binding protein S1, serine-rich domain [Homo sap...    82   7e-16
gi|169166609 PREDICTED: similar to ribonucleic acid binding prot...    80   2e-15
gi|113415994 PREDICTED: similar to ribonucleic acid binding prot...    80   2e-15
gi|113415504 PREDICTED: similar to ribonucleic acid binding prot...    80   2e-15
gi|169166499 PREDICTED: similar to ribonucleic acid binding prot...    80   2e-15
gi|113415498 PREDICTED: similar to ribonucleic acid binding prot...    80   2e-15
gi|88973230 PREDICTED: similar to ribonucleic acid binding prote...    80   2e-15
gi|116734696 RNA binding motif protein 23 isoform 1 [Homo sapiens]     80   2e-15
gi|116734694 RNA binding motif protein 23 isoform 2 [Homo sapiens]     80   2e-15
gi|4757926 RNA binding motif protein 39 isoform b [Homo sapiens]       79   6e-15
gi|35493811 RNA binding motif protein 39 isoform a [Homo sapiens]      79   6e-15
gi|56699409 RNA binding motif protein, X-linked [Homo sapiens]         75   7e-14
gi|242117971 RNA binding motif protein, X-linked-like 1 [Homo sa...    74   2e-13
gi|21361809 RNA binding motif protein, X-linked-like 1 [Homo sap...    74   2e-13
gi|153252068 testes-specific heterogenous nuclear ribonucleoprot...    74   2e-13
gi|116734698 RNA binding motif protein 23 isoform 3 [Homo sapiens]     73   3e-13
gi|119226260 calcium homeostasis endoplasmic reticulum protein [...    73   3e-13
gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens]     73   3e-13
gi|15055543 splicing factor, arginine/serine-rich 2B [Homo sapiens]    73   3e-13
gi|56090527 RNA binding motif protein, Y-linked, family 1, membe...    71   1e-12
gi|54633344 RNA binding motif protein, Y-linked, family 1, membe...    71   1e-12

>gi|4759098 splicing factor, arginine/serine-rich 10 [Homo sapiens]
          Length = 288

 Score =  592 bits (1526), Expect = e-169
 Identities = 288/288 (100%), Positives = 288/288 (100%)

Query: 1   MSDSGEQNYGERESRSASRSGSAHGSGKSARHTPARSRSKEDSRRSRSKSRSRSESRSRS 60
           MSDSGEQNYGERESRSASRSGSAHGSGKSARHTPARSRSKEDSRRSRSKSRSRSESRSRS
Sbjct: 1   MSDSGEQNYGERESRSASRSGSAHGSGKSARHTPARSRSKEDSRRSRSKSRSRSESRSRS 60

Query: 61  RRSSRRHYTRSRSRSRSHRRSRSRSYSRDYRRRHSHSHSPMSTRRRHVGNRANPDPNCCL 120
           RRSSRRHYTRSRSRSRSHRRSRSRSYSRDYRRRHSHSHSPMSTRRRHVGNRANPDPNCCL
Sbjct: 61  RRSSRRHYTRSRSRSRSHRRSRSRSYSRDYRRRHSHSHSPMSTRRRHVGNRANPDPNCCL 120

Query: 121 GVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERAN 180
           GVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERAN
Sbjct: 121 GVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERAN 180

Query: 181 GMELDGRRIRVDFSITKRPHTPTPGIYMGRPTYGSSRRRDYYDRGYDRGYDDRDYYSRSY 240
           GMELDGRRIRVDFSITKRPHTPTPGIYMGRPTYGSSRRRDYYDRGYDRGYDDRDYYSRSY
Sbjct: 181 GMELDGRRIRVDFSITKRPHTPTPGIYMGRPTYGSSRRRDYYDRGYDRGYDDRDYYSRSY 240

Query: 241 RGGGGGGGGWRAAQDRDQIYRRRSPSPYYSRGGYRSRSRSRSYSPRRY 288
           RGGGGGGGGWRAAQDRDQIYRRRSPSPYYSRGGYRSRSRSRSYSPRRY
Sbjct: 241 RGGGGGGGGWRAAQDRDQIYRRRSPSPYYSRGGYRSRSRSRSYSPRRY 288


>gi|9558733 transformer-2 alpha [Homo sapiens]
          Length = 282

 Score =  357 bits (917), Expect = 5e-99
 Identities = 198/305 (64%), Positives = 222/305 (72%), Gaps = 40/305 (13%)

Query: 1   MSDSGEQNYGERESRSASRSGSAHGSG-KSARHTPARSRSKEDSRRSRSKSRSRSESRSR 59
           MSD  E N+  RESRS S+S +   +  KS   + +RS S+  S+ S S SRSRS+SRSR
Sbjct: 1   MSDVEENNFEGRESRSQSKSPTGTPARVKSESRSGSRSPSRV-SKHSESHSRSRSKSRSR 59

Query: 60  SRRSSRRHYTRSRSRSRSHRR-SRSRSYSRDYRRRHSHSHSPMSTRRRHVGNRANPDPNC 118
           SRR S R YTRSRS S SHRR SRSRSY+ +YRRR S SHSPMS RRRH G+RANPDPN 
Sbjct: 60  SRRHSHRRYTRSRSHSHSHRRRSRSRSYTPEYRRRRSRSHSPMSNRRRHTGSRANPDPNT 119

Query: 119 CLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKER 178
           CLGVFGLSLYTTERDLREVFS+YGP++ V++VYDQ++ RSRGFAFVYFE +DD+KEA ER
Sbjct: 120 CLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMER 179

Query: 179 ANGMELDGRRIRVDFSITKRPHTPTPGIYMGRPTY--------------GSSRRRD-YYD 223
           ANGMELDGRRIRVD+SITKR HTPTPGIYMGRPT+              G  RRRD YYD
Sbjct: 180 ANGMELDGRRIRVDYSITKRAHTPTPGIYMGRPTHSGGGGGGGGGGGGGGGGRRRDSYYD 239

Query: 224 RGYDRGYDDRDYYSRSYRGGGGGGGGWRAAQDRDQIYRRRSPSPYYSRGGYRSRSRSRSY 283
           RGYDRGYD                      +D D  YRRRSPSPYYSR  YRSRSRSRSY
Sbjct: 240 RGYDRGYD--------------------RYEDYDYRYRRRSPSPYYSR--YRSRSRSRSY 277

Query: 284 SPRRY 288
           SPRRY
Sbjct: 278 SPRRY 282


>gi|4502847 cold inducible RNA binding protein [Homo sapiens]
          Length = 172

 Score =  107 bits (267), Expect = 1e-23
 Identities = 72/167 (43%), Positives = 88/167 (52%), Gaps = 17/167 (10%)

Query: 120 LGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERA 179
           L V GLS  T E+ L +VFSKYG I++V +V D++++RSRGF FV FEN+DDAK+A    
Sbjct: 8   LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67

Query: 180 NGMELDGRRIRVD---FSITKRPHTPTPGIYMGRPTYGSSRRRDYYDRGYDRGYDDRDYY 236
           NG  +DGR+IRVD    S   R      G   GR  +   R R    RG+ RG  DR Y 
Sbjct: 68  NGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGRGR---GRGFSRGGGDRGYG 124

Query: 237 SRSYRGGGGGGGGWRAAQDRDQIYRRRSPSPYYSRGGYRSRSRSRSY 283
              +    GG GG R        Y  RS S     GGY  RS   SY
Sbjct: 125 GNRFESRSGGYGGSR------DYYSSRSQS-----GGYSDRSSGGSY 160


>gi|5803137 RNA binding motif protein 3 [Homo sapiens]
          Length = 157

 Score = 88.2 bits (217), Expect = 8e-18
 Identities = 58/156 (37%), Positives = 79/156 (50%), Gaps = 11/156 (7%)

Query: 120 LGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERA 179
           L V GL+  T E+ L + FS +GPI++V +V D++++RSRGF F+ F N + A  A    
Sbjct: 8   LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAM 67

Query: 180 NGMELDGRRIRVDFSITKRPHTPTPGIYMGRPTYGSSRRRDYYDRGYDRGYDDRDYYSRS 239
           NG  LDGR+IRVD +      T   G       +G+  R     R Y RG  D+ Y S  
Sbjct: 68  NGESLDGRQIRVDHAGKSARGTRGGG-------FGAHGR----GRSYSRGGGDQGYGSGR 116

Query: 240 YRGGGGGGGGWRAAQDRDQIYRRRSPSPYYSRGGYR 275
           Y     GG G+   + RD   R +     YS G YR
Sbjct: 117 YYDSRPGGYGYGYGRSRDYNGRNQGGYDRYSGGNYR 152


>gi|16905517 FUS interacting protein (serine-arginine rich) 1
           isoform 2 [Homo sapiens]
          Length = 262

 Score = 85.1 bits (209), Expect = 6e-17
 Identities = 68/182 (37%), Positives = 88/182 (48%), Gaps = 19/182 (10%)

Query: 116 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEA 175
           PN  L V  ++  T   DLR  F +YGPI DV +  D  +RR RGFA+V FE+V DA++A
Sbjct: 8   PNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDA 67

Query: 176 KERANGMELDGRRIRVDFSITKRPHTPTPGIYMGRPTYGSSRRRDY--YDRGYDRGYDDR 233
               +   + GR+I + F+   R          GR  Y SSR  DY  Y R   R Y+ R
Sbjct: 68  LHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSRSRSYERR 127

Query: 234 -------DY-YSRSYRGGGGGGGG----WRAAQDRDQI-YRRRSPSPYYSRGGYRSRSRS 280
                  DY Y RSY        G     R+  D D+  +R RS    +SR    SRSRS
Sbjct: 128 RSRSRSFDYNYRRSYSPRNSRPTGRPRRSRSHSDNDRFKHRNRS----FSRSKSNSRSRS 183

Query: 281 RS 282
           +S
Sbjct: 184 KS 185



 Score = 51.6 bits (122), Expect = 8e-07
 Identities = 38/99 (38%), Positives = 50/99 (50%), Gaps = 13/99 (13%)

Query: 7   QNYGERESRSASRSGS-------AHGSGKSARHTPARSRSKEDSRRSRSKSRSRSESRSR 59
           +++   +S S SRS S       A    +SA HT  R  SK DS+ +  KS SR E  SR
Sbjct: 170 RSFSRSKSNSRSRSKSQPKKEMKAKSRSRSASHTKTRGTSKTDSK-THYKSGSRYEKESR 228

Query: 60  SRRSSRRHYTRSRSRSRSHRRSRSRSYSRDYRRRHSHSH 98
            +   R     S+S+SRS  RSRS+S SR +    S  H
Sbjct: 229 KKEPPR-----SKSQSRSQSRSRSKSRSRSWTSPKSSGH 262



 Score = 48.5 bits (114), Expect = 7e-06
 Identities = 41/117 (35%), Positives = 57/117 (48%), Gaps = 19/117 (16%)

Query: 4   SGEQNYGERESRSAS------RSGSAHGSGKSARHTPARSRSKEDSRR--------SRSK 49
           S  ++Y  R SRS S      RS S   S  + R  P RSRS  D+ R        SRSK
Sbjct: 119 SRSRSYERRRSRSRSFDYNYRRSYSPRNSRPTGR--PRRSRSHSDNDRFKHRNRSFSRSK 176

Query: 50  SRSRSESRSRSRRSSRRHYTRSRSRSRSHRRSRSRSYSRDYRRRHSHSHSPMSTRRR 106
           S SRS S+S+ ++  +    +SRSRS SH ++R  S +       S S     +R++
Sbjct: 177 SNSRSRSKSQPKKEMK---AKSRSRSASHTKTRGTSKTDSKTHYKSGSRYEKESRKK 230



 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 35/93 (37%), Positives = 47/93 (50%), Gaps = 18/93 (19%)

Query: 31  RHTPARSRSKEDSRRSRSKSRSRSESRSRSRRSSR-----------------RHYTRSRS 73
           R+  +RSRS E  RRSRS+S   +  RS S R+SR                 +H  RS S
Sbjct: 115 RYRRSRSRSYE-RRRSRSRSFDYNYRRSYSPRNSRPTGRPRRSRSHSDNDRFKHRNRSFS 173

Query: 74  RSRSHRRSRSRSYSRDYRRRHSHSHSPMSTRRR 106
           RS+S+ RSRS+S  +   +  S S S   T+ R
Sbjct: 174 RSKSNSRSRSKSQPKKEMKAKSRSRSASHTKTR 206



 Score = 44.3 bits (103), Expect = 1e-04
 Identities = 26/70 (37%), Positives = 38/70 (54%)

Query: 46  SRSKSRSRSESRSRSRRSSRRHYTRSRSRSRSHRRSRSRSYSRDYRRRHSHSHSPMSTRR 105
           ++ K++      S SR      Y RSRSRS   RRSRSRS+  +YRR +S  +S  + R 
Sbjct: 94  NQMKAKEGRNVYSSSRYDDYDRYRRSRSRSYERRRSRSRSFDYNYRRSYSPRNSRPTGRP 153

Query: 106 RHVGNRANPD 115
           R   + ++ D
Sbjct: 154 RRSRSHSDND 163



 Score = 41.6 bits (96), Expect = 8e-04
 Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 1/90 (1%)

Query: 11  ERESRSASRSGSAHGS-GKSARHTPARSRSKEDSRRSRSKSRSRSESRSRSRRSSRRHYT 69
           +R  RS SRS     S  +S  +   RS S  +SR +    RSRS S +   +   R ++
Sbjct: 114 DRYRRSRSRSYERRRSRSRSFDYNYRRSYSPRNSRPTGRPRRSRSHSDNDRFKHRNRSFS 173

Query: 70  RSRSRSRSHRRSRSRSYSRDYRRRHSHSHS 99
           RS+S SRS  +S+ +   +   R  S SH+
Sbjct: 174 RSKSNSRSRSKSQPKKEMKAKSRSRSASHT 203



 Score = 37.0 bits (84), Expect = 0.020
 Identities = 31/78 (39%), Positives = 43/78 (55%), Gaps = 14/78 (17%)

Query: 2   SDSGEQNYGERESRSASRSGS---AHGSGK--SARHTPARSRSKEDSRR---------SR 47
           S S  Q   E +++S SRS S     G+ K  S  H  + SR +++SR+         SR
Sbjct: 181 SRSKSQPKKEMKAKSRSRSASHTKTRGTSKTDSKTHYKSGSRYEKESRKKEPPRSKSQSR 240

Query: 48  SKSRSRSESRSRSRRSSR 65
           S+SRSRS+SRSRS  S +
Sbjct: 241 SQSRSRSKSRSRSWTSPK 258



 Score = 36.6 bits (83), Expect = 0.026
 Identities = 31/74 (41%), Positives = 37/74 (50%), Gaps = 8/74 (10%)

Query: 31  RHTPARSRSKEDSRRSRSKSRSRSESRSRSRRSSRRHYTRSRSRS----RSHRRSRSRSY 86
           R TP + ++KE        S SR +   R RRS  R Y R RSRS     ++RRS S   
Sbjct: 90  RKTPNQMKAKEGRN---VYSSSRYDDYDRYRRSRSRSYERRRSRSRSFDYNYRRSYSPRN 146

Query: 87  SRDY-RRRHSHSHS 99
           SR   R R S SHS
Sbjct: 147 SRPTGRPRRSRSHS 160



 Score = 35.8 bits (81), Expect = 0.045
 Identities = 32/77 (41%), Positives = 40/77 (51%), Gaps = 7/77 (9%)

Query: 37  SRSKEDSRRSRSKSRSRSESRSRSR-RSSRRHYTRSRSRSRSH---RRSRSRSYSRDYRR 92
           S S+ D      +SRSRS  R RSR RS   +Y RS S   S    R  RSRS+S + R 
Sbjct: 106 SSSRYDDYDRYRRSRSRSYERRRSRSRSFDYNYRRSYSPRNSRPTGRPRRSRSHSDNDRF 165

Query: 93  RH---SHSHSPMSTRRR 106
           +H   S S S  ++R R
Sbjct: 166 KHRNRSFSRSKSNSRSR 182


>gi|5730079 FUS interacting protein (serine-arginine rich) 1 isoform
           1 [Homo sapiens]
          Length = 183

 Score = 84.0 bits (206), Expect = 1e-16
 Identities = 66/171 (38%), Positives = 83/171 (48%), Gaps = 20/171 (11%)

Query: 116 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEA 175
           PN  L V  ++  T   DLR  F +YGPI DV +  D  +RR RGFA+V FE+V DA++A
Sbjct: 8   PNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDA 67

Query: 176 KERANGMELDGRRIRVDFSITKRPHTPTPGIYMGRPTYGSSRRRDY--YDRGYDRGYDDR 233
               +   + GR+I + F+   R          GR  Y SSR  DY  Y R   R Y+ R
Sbjct: 68  LHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSRSRSYERR 127

Query: 234 DYYSRSYRGGGGGGGGWRAAQDRDQIYRRRSPSPYYSRGGYRSRSRSRSYS 284
              SRS+                D  Y RRS SP  SR   R R RSRS+S
Sbjct: 128 RSRSRSF----------------DYNY-RRSYSPRNSRPTGRPR-RSRSHS 160



 Score = 52.8 bits (125), Expect = 4e-07
 Identities = 34/90 (37%), Positives = 44/90 (48%), Gaps = 1/90 (1%)

Query: 46  SRSKSRSRSESRSRSRRSSRRHYTRSRSRSRSHRRSRSRSYSRDYRRRHSHSHS-PMSTR 104
           ++ K++      S SR      Y RSRSRS   RRSRSRS+  +YRR +S  +S P    
Sbjct: 94  NQMKAKEGRNVYSSSRYDDYDRYRRSRSRSYERRRSRSRSFDYNYRRSYSPRNSRPTGRP 153

Query: 105 RRHVGNRANPDPNCCLGVFGLSLYTTERDL 134
           RR   +  N  PNC       S Y T R +
Sbjct: 154 RRSRSHSDNDRPNCSWNTQYSSAYYTSRKI 183



 Score = 33.5 bits (75), Expect = 0.22
 Identities = 25/60 (41%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 31  RHTPARSRSKEDSRRSRSKSRSRSESRSRSRRSSRRHYTRSRSRSRSHRRSRSRSYSRDY 90
           R+  +RSRS E  RRSRS+S   +  RS S R+SR      RSRS S     + S++  Y
Sbjct: 115 RYRRSRSRSYE-RRRSRSRSFDYNYRRSYSPRNSRPTGRPRRSRSHSDNDRPNCSWNTQY 173


>gi|169161980 PREDICTED: similar to FUS interacting protein
           (serine-arginine rich) 1, partial [Homo sapiens]
          Length = 181

 Score = 82.8 bits (203), Expect = 3e-16
 Identities = 64/173 (36%), Positives = 81/173 (46%), Gaps = 19/173 (10%)

Query: 116 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEA 175
           PN  L V  ++  T   DLR  F +YGPI DV +  D  +RR RGFA+V FE+V DA++A
Sbjct: 8   PNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDA 67

Query: 176 KERANGMELDGRRIRVDFSITKRPHTPTPGIYMGRPTYGSSRRRDY--YDRGYDRGYDDR 233
               +   + GR+I + F+   R          GR  Y SSR  DY  Y R   R Y+ R
Sbjct: 68  LHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSRSRSYERR 127

Query: 234 DYYSRSYRGGGGGGGGWRAAQDRDQIYRRRSPSPYYSRGGYRSRSRSRSYSPR 286
              SRS+                D  Y RRS SP     G   RSRS S + R
Sbjct: 128 RSRSRSF----------------DYNY-RRSYSPRNRPTGRPRRSRSHSDNDR 163



 Score = 55.1 bits (131), Expect = 7e-08
 Identities = 33/87 (37%), Positives = 42/87 (48%)

Query: 46  SRSKSRSRSESRSRSRRSSRRHYTRSRSRSRSHRRSRSRSYSRDYRRRHSHSHSPMSTRR 105
           ++ K++      S SR      Y RSRSRS   RRSRSRS+  +YRR +S  + P    R
Sbjct: 94  NQMKAKEGRNVYSSSRYDDYDRYRRSRSRSYERRRSRSRSFDYNYRRSYSPRNRPTGRPR 153

Query: 106 RHVGNRANPDPNCCLGVFGLSLYTTER 132
           R   +  N  PNC       S Y T R
Sbjct: 154 RSRSHSDNDRPNCSWNTQYSSAYYTSR 180


>gi|47271443 splicing factor, arginine/serine-rich 2 [Homo sapiens]
          Length = 221

 Score = 82.4 bits (202), Expect = 4e-16
 Identities = 66/178 (37%), Positives = 83/178 (46%), Gaps = 13/178 (7%)

Query: 120 LGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERA 179
           L V  L+  T+   LR VF KYG + DV I  D+ ++ SRGFAFV F +  DA++A +  
Sbjct: 16  LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 75

Query: 180 NGMELDGRRIRVDFSITKRP-------HTPTPGIY----MGRPTYGSSRRRDYYDRGYDR 228
           +G  LDGR +RV  +   RP         P P  Y     GR +    RRR    R   R
Sbjct: 76  DGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSRSPRRRRRSRSRSRSR 135

Query: 229 GYD-DRDYYSRSYRGGGGGGGGWRAAQDRDQIYRRRSPSPYYSRGGYRSRSRSRSYSP 285
                R  YSRS +         R+        R +S S   SR   RSRSRSRS SP
Sbjct: 136 SRSRSRSRYSRS-KSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSRSRSRSRSRSRSP 192



 Score = 67.0 bits (162), Expect = 2e-11
 Identities = 49/101 (48%), Positives = 55/101 (54%), Gaps = 13/101 (12%)

Query: 9   YGERESRSASRSGSA---HGSGKSARHTPARSRSKEDSRRSRSKSRSRSESRSRSRRSSR 65
           YG       SR G     +G G   R    RSRS    RRSRS+SRSRS SRSRSR    
Sbjct: 92  YGRPPDSHHSRRGPPPRRYGGGGYGR----RSRSPRRRRRSRSRSRSRSRSRSRSR---- 143

Query: 66  RHYTRSRSRSRSHRRSRSRSYSRDYRRRHSHSHSPMSTRRR 106
             Y+RS+SRSR+  RSRS S SR  RR  S S S   +R R
Sbjct: 144 --YSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSRSR 182



 Score = 60.5 bits (145), Expect = 2e-09
 Identities = 46/113 (40%), Positives = 60/113 (53%), Gaps = 14/113 (12%)

Query: 5   GEQNYGERESRSASRSGSAHGSGKSARHTPARSRSKEDSRRSRSKSRSRSESRSRSR-RS 63
           G   YG R     SRS       +S   + +RSRS+    RS+S+SR+RS SRS S+ RS
Sbjct: 111 GGGGYGRR-----SRSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSRSTSKSRS 165

Query: 64  SRRHYTRSRSRSRSHRRSRSRSYSRDYRRRHSHSHSPMSTRRRHVGNRANPDP 116
           +RR  ++S S SRS  RSRSRS SR        S  P+S R     +R+   P
Sbjct: 166 ARRSKSKSSSVSRSRSRSRSRSRSR--------SPPPVSKRESKSRSRSKSPP 210



 Score = 53.5 bits (127), Expect = 2e-07
 Identities = 38/79 (48%), Positives = 46/79 (58%), Gaps = 7/79 (8%)

Query: 14  SRSASRSGSAHGSGKSARHTPARSRSKEDSR---RSRSKS----RSRSESRSRSRRSSRR 66
           SRS SRS S +   KS   T +RSRS   SR   RS+SKS    RSRS SRSRSR  S  
Sbjct: 134 SRSRSRSRSRYSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSRSRSRSRSRSRSPP 193

Query: 67  HYTRSRSRSRSHRRSRSRS 85
             ++  S+SRS  +S  +S
Sbjct: 194 PVSKRESKSRSRSKSPPKS 212



 Score = 41.2 bits (95), Expect = 0.001
 Identities = 32/83 (38%), Positives = 37/83 (44%), Gaps = 3/83 (3%)

Query: 27  GKSARHTPARSRSKEDSRRSRSKSRSRSESRSRSRRSSRRHYTRSRSRSRSHRRSRSRS- 85
           G+  R   AR     DS  SR     R        R SR    R RSRSRS  RSRSRS 
Sbjct: 82  GRELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSRSPRRRRRSRSRSRSRSRSRSR 141

Query: 86  --YSRDYRRRHSHSHSPMSTRRR 106
             YSR   R  + S S  +++ R
Sbjct: 142 SRYSRSKSRSRTRSRSRSTSKSR 164



 Score = 35.8 bits (81), Expect = 0.045
 Identities = 30/66 (45%), Positives = 39/66 (59%), Gaps = 5/66 (7%)

Query: 2   SDSGEQNYGERESRSASRSGSAHGSGKSARHTPARSRSKEDSRRSRSKSR---SRSESRS 58
           S S  ++     SRS S+S SA  S KS   + +RSRS+  SR SRS+S    S+ ES+S
Sbjct: 145 SRSKSRSRTRSRSRSTSKSRSARRS-KSKSSSVSRSRSRSRSR-SRSRSPPPVSKRESKS 202

Query: 59  RSRRSS 64
           RSR  S
Sbjct: 203 RSRSKS 208


>gi|6857826 RNA-binding protein S1, serine-rich domain [Homo
           sapiens]
          Length = 305

 Score = 81.6 bits (200), Expect = 7e-16
 Identities = 63/194 (32%), Positives = 91/194 (46%), Gaps = 19/194 (9%)

Query: 10  GERESRSASRSGSAHGSGKSARHTPARSRSKEDSRRSRSKSRSRSESRSRSRRSSRRHYT 69
           G   +RS S S S+ GS  S   T + S S   S  SRS S S S S S S  S     +
Sbjct: 71  GSSSTRSRSSSTSSSGSSTS---TGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPS 127

Query: 70  RSRSRSRSHRRSRSRSYSRDYRRRHSHSHSPMSTRRRHVGNRANPDPNCCLGVFGLSLYT 129
           R R  +R   RS+S+   RD + R   S SP  T + H+G               L+   
Sbjct: 128 RRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPT-KVHIGR--------------LTRNV 172

Query: 130 TERDLREVFSKYGPIADVSI-VYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRR 188
           T+  + E+FS YG I  + + V       S+G+A+V FEN D+A++A +  +G ++DG+ 
Sbjct: 173 TKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQE 232

Query: 189 IRVDFSITKRPHTP 202
           I     +   P  P
Sbjct: 233 ITATAVLAPWPRPP 246



 Score = 34.7 bits (78), Expect = 0.100
 Identities = 21/41 (51%), Positives = 21/41 (51%)

Query: 51  RSRSESRSRSRRSSRRHYTRSRSRSRSHRRSRSRSYSRDYR 91
           RS    R RSR   RR   R RSRS   RR RSRS S   R
Sbjct: 265 RSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSSSNSSR 305


>gi|18379334 RNA-binding protein S1, serine-rich domain [Homo
           sapiens]
          Length = 305

 Score = 81.6 bits (200), Expect = 7e-16
 Identities = 63/194 (32%), Positives = 91/194 (46%), Gaps = 19/194 (9%)

Query: 10  GERESRSASRSGSAHGSGKSARHTPARSRSKEDSRRSRSKSRSRSESRSRSRRSSRRHYT 69
           G   +RS S S S+ GS  S   T + S S   S  SRS S S S S S S  S     +
Sbjct: 71  GSSSTRSRSSSTSSSGSSTS---TGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPS 127

Query: 70  RSRSRSRSHRRSRSRSYSRDYRRRHSHSHSPMSTRRRHVGNRANPDPNCCLGVFGLSLYT 129
           R R  +R   RS+S+   RD + R   S SP  T + H+G               L+   
Sbjct: 128 RRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPT-KVHIGR--------------LTRNV 172

Query: 130 TERDLREVFSKYGPIADVSI-VYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRR 188
           T+  + E+FS YG I  + + V       S+G+A+V FEN D+A++A +  +G ++DG+ 
Sbjct: 173 TKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQE 232

Query: 189 IRVDFSITKRPHTP 202
           I     +   P  P
Sbjct: 233 ITATAVLAPWPRPP 246



 Score = 34.7 bits (78), Expect = 0.100
 Identities = 21/41 (51%), Positives = 21/41 (51%)

Query: 51  RSRSESRSRSRRSSRRHYTRSRSRSRSHRRSRSRSYSRDYR 91
           RS    R RSR   RR   R RSRS   RR RSRS S   R
Sbjct: 265 RSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSSSNSSR 305


>gi|169166609 PREDICTED: similar to ribonucleic acid binding protein
           S1 isoform 6 [Homo sapiens]
          Length = 305

 Score = 80.5 bits (197), Expect = 2e-15
 Identities = 65/196 (33%), Positives = 92/196 (46%), Gaps = 20/196 (10%)

Query: 10  GERESRSASRSGSAHGSGKSARHTPARSRSKEDSRRSRSKSRSRSESRSRSRRSSRRHYT 69
           G   +RS S S S+ GS  S   T + S S   S  SRS S S S S S S  S     +
Sbjct: 71  GSSSTRSRSSSTSSSGSSTS---TGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPS 127

Query: 70  RSRSRSRSHRRSRSRSYSRDYRRRHSHSHSPMSTRRRHVGNRANPDPNCCLGVFGLSLYT 129
           R R  +R   RS+S+   RD + R   S SP  T + H+G               L+   
Sbjct: 128 RRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPT-KVHIGR--------------LTRNV 172

Query: 130 TERDLREVFSKYGPIADVSI-VYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRR 188
           T+  + E+FS YG I  + + V       S+G+A V FEN D+A++A +  +G ++DG+ 
Sbjct: 173 TKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQE 232

Query: 189 IRVDFSITKRPHTPTP 204
           I     +   P  PTP
Sbjct: 233 ITATVVLAPWPR-PTP 247



 Score = 33.5 bits (75), Expect = 0.22
 Identities = 20/37 (54%), Positives = 20/37 (54%)

Query: 51  RSRSESRSRSRRSSRRHYTRSRSRSRSHRRSRSRSYS 87
           RS    R RSR   RR   R RSRS   RR RSRS S
Sbjct: 265 RSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSSS 301


>gi|113415994 PREDICTED: similar to ribonucleic acid binding protein
           S1 isoform 2 [Homo sapiens]
          Length = 305

 Score = 80.5 bits (197), Expect = 2e-15
 Identities = 65/196 (33%), Positives = 92/196 (46%), Gaps = 20/196 (10%)

Query: 10  GERESRSASRSGSAHGSGKSARHTPARSRSKEDSRRSRSKSRSRSESRSRSRRSSRRHYT 69
           G   +RS S S S+ GS  S   T + S S   S  SRS S S S S S S  S     +
Sbjct: 71  GSSSTRSRSSSTSSSGSSTS---TGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPS 127

Query: 70  RSRSRSRSHRRSRSRSYSRDYRRRHSHSHSPMSTRRRHVGNRANPDPNCCLGVFGLSLYT 129
           R R  +R   RS+S+   RD + R   S SP  T + H+G               L+   
Sbjct: 128 RRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPT-KVHIGR--------------LTRNV 172

Query: 130 TERDLREVFSKYGPIADVSI-VYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRR 188
           T+  + E+FS YG I  + + V       S+G+A V FEN D+A++A +  +G ++DG+ 
Sbjct: 173 TKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQE 232

Query: 189 IRVDFSITKRPHTPTP 204
           I     +   P  PTP
Sbjct: 233 ITATVVLAPWPR-PTP 247



 Score = 33.5 bits (75), Expect = 0.22
 Identities = 20/37 (54%), Positives = 20/37 (54%)

Query: 51  RSRSESRSRSRRSSRRHYTRSRSRSRSHRRSRSRSYS 87
           RS    R RSR   RR   R RSRS   RR RSRS S
Sbjct: 265 RSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSSS 301


>gi|113415504 PREDICTED: similar to ribonucleic acid binding protein
           S1 [Homo sapiens]
          Length = 305

 Score = 80.5 bits (197), Expect = 2e-15
 Identities = 65/196 (33%), Positives = 92/196 (46%), Gaps = 20/196 (10%)

Query: 10  GERESRSASRSGSAHGSGKSARHTPARSRSKEDSRRSRSKSRSRSESRSRSRRSSRRHYT 69
           G   +RS S S S+ GS  S   T + S S   S  SRS S S S S S S  S     +
Sbjct: 71  GSSSTRSRSSSTSSSGSSTS---TGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPS 127

Query: 70  RSRSRSRSHRRSRSRSYSRDYRRRHSHSHSPMSTRRRHVGNRANPDPNCCLGVFGLSLYT 129
           R R  +R   RS+S+   RD + R   S SP  T + H+G               L+   
Sbjct: 128 RRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPT-KVHIGR--------------LTRNV 172

Query: 130 TERDLREVFSKYGPIADVSI-VYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRR 188
           T+  + E+FS YG I  + + V       S+G+A V FEN D+A++A +  +G ++DG+ 
Sbjct: 173 TKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQE 232

Query: 189 IRVDFSITKRPHTPTP 204
           I     +   P  PTP
Sbjct: 233 ITATVVLAPWPR-PTP 247



 Score = 33.5 bits (75), Expect = 0.22
 Identities = 20/37 (54%), Positives = 20/37 (54%)

Query: 51  RSRSESRSRSRRSSRRHYTRSRSRSRSHRRSRSRSYS 87
           RS    R RSR   RR   R RSRS   RR RSRS S
Sbjct: 265 RSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSSS 301


>gi|169166499 PREDICTED: similar to ribonucleic acid binding protein
           S1 [Homo sapiens]
          Length = 305

 Score = 80.5 bits (197), Expect = 2e-15
 Identities = 65/196 (33%), Positives = 92/196 (46%), Gaps = 20/196 (10%)

Query: 10  GERESRSASRSGSAHGSGKSARHTPARSRSKEDSRRSRSKSRSRSESRSRSRRSSRRHYT 69
           G   +RS S S S+ GS  S   T + S S   S  SRS S S S S S S  S     +
Sbjct: 71  GSSSTRSRSSSTSSSGSSTS---TGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPS 127

Query: 70  RSRSRSRSHRRSRSRSYSRDYRRRHSHSHSPMSTRRRHVGNRANPDPNCCLGVFGLSLYT 129
           R R  +R   RS+S+   RD + R   S SP  T + H+G               L+   
Sbjct: 128 RRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPT-KVHIGR--------------LTRNV 172

Query: 130 TERDLREVFSKYGPIADVSI-VYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRR 188
           T+  + E+FS YG I  + + V       S+G+A V FEN D+A++A +  +G ++DG+ 
Sbjct: 173 TKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQE 232

Query: 189 IRVDFSITKRPHTPTP 204
           I     +   P  PTP
Sbjct: 233 ITATVVLAPWPR-PTP 247



 Score = 33.5 bits (75), Expect = 0.22
 Identities = 20/37 (54%), Positives = 20/37 (54%)

Query: 51  RSRSESRSRSRRSSRRHYTRSRSRSRSHRRSRSRSYS 87
           RS    R RSR   RR   R RSRS   RR RSRS S
Sbjct: 265 RSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSSS 301


>gi|113415498 PREDICTED: similar to ribonucleic acid binding protein
           S1 [Homo sapiens]
          Length = 305

 Score = 80.5 bits (197), Expect = 2e-15
 Identities = 65/196 (33%), Positives = 92/196 (46%), Gaps = 20/196 (10%)

Query: 10  GERESRSASRSGSAHGSGKSARHTPARSRSKEDSRRSRSKSRSRSESRSRSRRSSRRHYT 69
           G   +RS S S S+ GS  S   T + S S   S  SRS S S S S S S  S     +
Sbjct: 71  GSSSTRSRSSSTSSSGSSTS---TGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPS 127

Query: 70  RSRSRSRSHRRSRSRSYSRDYRRRHSHSHSPMSTRRRHVGNRANPDPNCCLGVFGLSLYT 129
           R R  +R   RS+S+   RD + R   S SP  T + H+G               L+   
Sbjct: 128 RRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPT-KVHIGR--------------LTRNV 172

Query: 130 TERDLREVFSKYGPIADVSI-VYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRR 188
           T+  + E+FS YG I  + + V       S+G+A V FEN D+A++A +  +G ++DG+ 
Sbjct: 173 TKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQE 232

Query: 189 IRVDFSITKRPHTPTP 204
           I     +   P  PTP
Sbjct: 233 ITATVVLAPWPR-PTP 247



 Score = 33.5 bits (75), Expect = 0.22
 Identities = 20/37 (54%), Positives = 20/37 (54%)

Query: 51  RSRSESRSRSRRSSRRHYTRSRSRSRSHRRSRSRSYS 87
           RS    R RSR   RR   R RSRS   RR RSRS S
Sbjct: 265 RSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSSS 301


>gi|88973230 PREDICTED: similar to ribonucleic acid binding protein
           S1 isoform 3 [Homo sapiens]
          Length = 305

 Score = 80.5 bits (197), Expect = 2e-15
 Identities = 65/196 (33%), Positives = 92/196 (46%), Gaps = 20/196 (10%)

Query: 10  GERESRSASRSGSAHGSGKSARHTPARSRSKEDSRRSRSKSRSRSESRSRSRRSSRRHYT 69
           G   +RS S S S+ GS  S   T + S S   S  SRS S S S S S S  S     +
Sbjct: 71  GSSSTRSRSSSTSSSGSSTS---TGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPS 127

Query: 70  RSRSRSRSHRRSRSRSYSRDYRRRHSHSHSPMSTRRRHVGNRANPDPNCCLGVFGLSLYT 129
           R R  +R   RS+S+   RD + R   S SP  T + H+G               L+   
Sbjct: 128 RRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPT-KVHIGR--------------LTRNV 172

Query: 130 TERDLREVFSKYGPIADVSI-VYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRR 188
           T+  + E+FS YG I  + + V       S+G+A V FEN D+A++A +  +G ++DG+ 
Sbjct: 173 TKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQE 232

Query: 189 IRVDFSITKRPHTPTP 204
           I     +   P  PTP
Sbjct: 233 ITATVVLAPWPR-PTP 247



 Score = 33.5 bits (75), Expect = 0.22
 Identities = 20/37 (54%), Positives = 20/37 (54%)

Query: 51  RSRSESRSRSRRSSRRHYTRSRSRSRSHRRSRSRSYS 87
           RS    R RSR   RR   R RSRS   RR RSRS S
Sbjct: 265 RSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSSS 301


>gi|116734696 RNA binding motif protein 23 isoform 1 [Homo sapiens]
          Length = 439

 Score = 80.5 bits (197), Expect = 2e-15
 Identities = 66/189 (34%), Positives = 88/189 (46%), Gaps = 33/189 (17%)

Query: 6   EQNYGERESRSASRSGSAHGSGKSARHTPARSRSKEDSRRSRSKSRSRSESRSRSRRSSR 65
           +++Y    + S S SG+      +   T  + RS     RS +KSR R  SRSR R   R
Sbjct: 31  KKDYPSNTTSSTSNSGNETSGSSTIGETSKKKRS-----RSHNKSRDRKRSRSRDRDRYR 85

Query: 66  RHYTRSRS-------RSRS-HRRSRSRSYSRDYRR---------------RHSHSHSPMS 102
           R  +RSRS       RSRS  RR  S S SRD+RR               R+ HS SP  
Sbjct: 86  RRNSRSRSPGRQCRHRSRSWDRRHGSESRSRDHRREDRVHYRSPPLATGYRYGHSKSPHF 145

Query: 103 TRR---RHVGNRANPDPNCCLGVFGLSLYT--TERDLREVFSKYGPIADVSIVYDQQSRR 157
             +   R   +  +P+      VF + L      RDL + FS  G + DV I+ D+ SRR
Sbjct: 146 REKSPVREPVDNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRR 205

Query: 158 SRGFAFVYF 166
           S+G A+V F
Sbjct: 206 SKGIAYVEF 214



 Score = 51.6 bits (122), Expect = 8e-07
 Identities = 27/72 (37%), Positives = 42/72 (58%)

Query: 120 LGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERA 179
           L V  L    TE  LR +F  +G I ++ ++ D  + RS+G+ F+ F + + A+ A E+ 
Sbjct: 265 LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQL 324

Query: 180 NGMELDGRRIRV 191
           NG EL GR +RV
Sbjct: 325 NGFELAGRPMRV 336


>gi|116734694 RNA binding motif protein 23 isoform 2 [Homo sapiens]
          Length = 423

 Score = 80.5 bits (197), Expect = 2e-15
 Identities = 61/170 (35%), Positives = 83/170 (48%), Gaps = 11/170 (6%)

Query: 6   EQNYGERESRSASRSGSAHGSGKSARHTPARSRSKEDSRRSRSKSRSRS-ESRSRSRRSS 64
           +++Y    + S S SG+      +   T  RSR ++  RR  S+SRS   + R RSR   
Sbjct: 31  KKDYPSNTTSSTSNSGNETSGSSTIGETSNRSRDRDRYRRRNSRSRSPGRQCRHRSRSWD 90

Query: 65  RRHYTRSRSRSRSHRRS-----RSRSYSRDYRRRHSHS-HSPMSTRRRHVGNRANPDPNC 118
           RRH   S SRSR HRR      RS   +  YR  HS S H    +  R   +  +P+   
Sbjct: 91  RRH--GSESRSRDHRREDRVHYRSPPLATGYRYGHSKSPHFREKSPVREPVDNLSPEERD 148

Query: 119 CLGVFGLSLYTT--ERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYF 166
              VF + L      RDL + FS  G + DV I+ D+ SRRS+G A+V F
Sbjct: 149 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEF 198



 Score = 51.6 bits (122), Expect = 8e-07
 Identities = 27/72 (37%), Positives = 42/72 (58%)

Query: 120 LGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERA 179
           L V  L    TE  LR +F  +G I ++ ++ D  + RS+G+ F+ F + + A+ A E+ 
Sbjct: 249 LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQL 308

Query: 180 NGMELDGRRIRV 191
           NG EL GR +RV
Sbjct: 309 NGFELAGRPMRV 320


>gi|4757926 RNA binding motif protein 39 isoform b [Homo sapiens]
          Length = 524

 Score = 78.6 bits (192), Expect = 6e-15
 Identities = 65/195 (33%), Positives = 90/195 (46%), Gaps = 33/195 (16%)

Query: 6   EQNYGERESRSASRSGSAHGSGKSARHTPARSRSKEDSRRSRSKSRSRSESRSRSRRSSR 65
           E  Y + E++ +S +G    S K  + + +RSRS E  +RS+SK R RS  R R +  SR
Sbjct: 12  EAPYKKDENKLSSANGHEERS-KKRKKSKSRSRSHE-RKRSKSKERKRSRDRERKKSKSR 69

Query: 66  -RHYTRSRSRSRSHRRSRSRSYSRDYR-------------------------RRHSHSHS 99
            R  +RS+ R RS  RSR R +   YR                         RR S S S
Sbjct: 70  ERKRSRSKERRRSRSRSRDRRFRGRYRSPYSGPKFNSAIRGKIGLPHSIKLSRRRSRSKS 129

Query: 100 PMSTRR---RHVGNRANPDPNCCLGVFGLSLYT--TERDLREVFSKYGPIADVSIVYDQQ 154
           P    +   R   +   P+      VF + L      RDL E FS  G + DV ++ D+ 
Sbjct: 130 PFRKDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRN 189

Query: 155 SRRSRGFAFVYFENV 169
           SRRS+G A+V F +V
Sbjct: 190 SRRSKGIAYVEFVDV 204



 Score = 53.5 bits (127), Expect = 2e-07
 Identities = 27/72 (37%), Positives = 43/72 (59%)

Query: 120 LGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERA 179
           L V  L    TE  LR +F  +G I  + ++ D ++ RS+G+ F+ F + + AK+A E+ 
Sbjct: 252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 311

Query: 180 NGMELDGRRIRV 191
           NG EL GR ++V
Sbjct: 312 NGFELAGRPMKV 323


>gi|35493811 RNA binding motif protein 39 isoform a [Homo sapiens]
          Length = 530

 Score = 78.6 bits (192), Expect = 6e-15
 Identities = 65/195 (33%), Positives = 90/195 (46%), Gaps = 33/195 (16%)

Query: 6   EQNYGERESRSASRSGSAHGSGKSARHTPARSRSKEDSRRSRSKSRSRSESRSRSRRSSR 65
           E  Y + E++ +S +G    S K  + + +RSRS E  +RS+SK R RS  R R +  SR
Sbjct: 12  EAPYKKDENKLSSANGHEERS-KKRKKSKSRSRSHE-RKRSKSKERKRSRDRERKKSKSR 69

Query: 66  -RHYTRSRSRSRSHRRSRSRSYSRDYR-------------------------RRHSHSHS 99
            R  +RS+ R RS  RSR R +   YR                         RR S S S
Sbjct: 70  ERKRSRSKERRRSRSRSRDRRFRGRYRSPYSGPKFNSAIRGKIGLPHSIKLSRRRSRSKS 129

Query: 100 PMSTRR---RHVGNRANPDPNCCLGVFGLSLYT--TERDLREVFSKYGPIADVSIVYDQQ 154
           P    +   R   +   P+      VF + L      RDL E FS  G + DV ++ D+ 
Sbjct: 130 PFRKDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRN 189

Query: 155 SRRSRGFAFVYFENV 169
           SRRS+G A+V F +V
Sbjct: 190 SRRSKGIAYVEFVDV 204



 Score = 53.5 bits (127), Expect = 2e-07
 Identities = 27/72 (37%), Positives = 43/72 (59%)

Query: 120 LGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERA 179
           L V  L    TE  LR +F  +G I  + ++ D ++ RS+G+ F+ F + + AK+A E+ 
Sbjct: 252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 311

Query: 180 NGMELDGRRIRV 191
           NG EL GR ++V
Sbjct: 312 NGFELAGRPMKV 323


>gi|56699409 RNA binding motif protein, X-linked [Homo sapiens]
          Length = 391

 Score = 75.1 bits (183), Expect = 7e-14
 Identities = 51/140 (36%), Positives = 70/140 (50%), Gaps = 27/140 (19%)

Query: 120 LGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERA 179
           L + GL+  T E+ L  VF KYG I +V ++ D+++ +SRGFAFV FE+  DAK+A    
Sbjct: 10  LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69

Query: 180 NGMELDGRRIRVDFSITKRPHTPTPGIYMGRPTYGSSRR---RDYYDRGYDRGYDDRDYY 236
           NG  LDG+ I+V+ +               +P++ S RR        RG  RG       
Sbjct: 70  NGKSLDGKAIKVEQAT--------------KPSFESGRRGPPPPPRSRGPPRG------- 108

Query: 237 SRSYRGGGGGGGGWRAAQDR 256
               RGG GG GG R    R
Sbjct: 109 ---LRGGRGGSGGTRGPPSR 125



 Score = 34.7 bits (78), Expect = 0.100
 Identities = 48/148 (32%), Positives = 53/148 (35%), Gaps = 37/148 (25%)

Query: 164 VYFENVDDAKEAKERANGMELDGRRIRVDFSITKRPHTPTPGIYMGRPTYGSSRRRDYYD 223
           VY    DD    K+  +  +    R         R + P P  Y  R    SS R DY  
Sbjct: 205 VYLSPRDDGYSTKDSYSSRDYPSSR-------DTRDYAPPPRDYTYRDYGHSSSRDDYPS 257

Query: 224 RGY-DR-GYD-DRDYYSR----SYRGGGGGGGGWRAAQDRDQIYRRRSPSPYY------- 269
           RGY DR GY  DRDY       SYR      G  R+A         R P P Y       
Sbjct: 258 RGYSDRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSAPP------TRGPPPSYGGSSRYD 311

Query: 270 ----SRGGY------RSRSRSRSYSPRR 287
               SR GY       S SRS  YS  R
Sbjct: 312 DYSSSRDGYGGSRDSYSSSRSDLYSSGR 339



 Score = 29.6 bits (65), Expect = 3.2
 Identities = 63/249 (25%), Positives = 81/249 (32%), Gaps = 48/249 (19%)

Query: 28  KSARHTPARSRSKEDSRRSRSKSRSR--SESRSRSRRSSRRHYTRSRSRSRSHRRSRSRS 85
           +SA   P RS S    R   S+ R       R     S R  Y   R    S + S S  
Sbjct: 164 RSAPSGPVRSSSGMGGRAPVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYS-- 221

Query: 86  YSRDY---RRRHSHSHSPMSTRRRHVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYG 142
            SRDY   R    ++  P     R  G+ ++ D     G      Y  +RD  +      
Sbjct: 222 -SRDYPSSRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRGYSDRDGYGRDRDYSD------ 274

Query: 143 PIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKRPHTP 202
                          S G     +E+  +++ A          G   R D   + R    
Sbjct: 275 -------------HPSGGSYRDSYESYGNSRSAPPTRGPPPSYGGSSRYDDYSSSRD--- 318

Query: 203 TPGIYMGRPTYGSSRRRDYYDRGYDR--------------GYDD-RDYYSRSYRGGGGGG 247
             G    R +Y SSR  D Y  G DR              GY   RD YS S RG   GG
Sbjct: 319 --GYGGSRDSYSSSRS-DLYSSGRDRVGRQERGLPPSMERGYPPPRDSYSSSSRGAPRGG 375

Query: 248 GGWRAAQDR 256
           G   +  DR
Sbjct: 376 GRGGSRSDR 384



 Score = 28.1 bits (61), Expect = 9.3
 Identities = 34/113 (30%), Positives = 38/113 (33%), Gaps = 34/113 (30%)

Query: 209 GRPTYGSS-------RRRDYYDRGYDRGYDDRDYYSR-------------------SYRG 242
           GR +YG          RRD Y    D GY  +D YS                    +YR 
Sbjct: 186 GRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRDYTYRD 245

Query: 243 GGGGGG----GWRAAQDRDQIYRRRSPSPYYSRGGYR----SRSRSRSYSPRR 287
            G          R   DRD   R R  S + S G YR    S   SRS  P R
Sbjct: 246 YGHSSSRDDYPSRGYSDRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSAPPTR 298


>gi|242117971 RNA binding motif protein, X-linked-like 1 [Homo
           sapiens]
          Length = 390

 Score = 73.6 bits (179), Expect = 2e-13
 Identities = 56/165 (33%), Positives = 77/165 (46%), Gaps = 13/165 (7%)

Query: 120 LGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERA 179
           L + GL+  T E+ L  VF KYG I +V ++ D+++ +SRGFAFV FE+  DAK+A    
Sbjct: 10  LFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAARDM 69

Query: 180 NGMELDGRRIRVDF----SITKRPHTPTPGIYMGRPTYGSSRRRDYYDRGYDRGYDDRDY 235
           NG  LDG+ I+V+     S  +  H P P      P  G    R     G  RG   R  
Sbjct: 70  NGKSLDGKAIKVEQATKPSFERGRHGPPPPPRSRGPPRGFGAGRG--GSGGTRGPPSRG- 126

Query: 236 YSRSYRGGGGGGGGWRAAQDRDQIYRRRSPSPYYSRGGYRSRSRS 280
               +   GG    +  +  R  +  +R P P   R G  S  RS
Sbjct: 127 ---GHMDDGGYSMNFNMSSSRGPLPVKRGPPP---RSGGPSPKRS 165



 Score = 33.5 bits (75), Expect = 0.22
 Identities = 43/141 (30%), Positives = 51/141 (36%), Gaps = 29/141 (20%)

Query: 164 VYFENVDDAKEAKERANGMELDGRRIRVDFSITKRPHTPTPGIYMGRPTYGSSRRRDYYD 223
           VY    DD    K+  +  +    R         R + P P  Y  R    SS R DY  
Sbjct: 205 VYLSPRDDGYSTKDSYSSRDYPSSR-------DTRDYAPPPRDYTYRDYGHSSSRDDYPS 257

Query: 224 RGY-DR-GYD-DRDYYSRSYRGGGGGGGGWRAAQDRDQIYRRRSPSPYY----------- 269
           RGY DR GY  DRDY    +  GG     + +  +       R P P Y           
Sbjct: 258 RGYGDRDGYGRDRDY--SDHPSGGSYRDSYESYGNSRSAPLTRGPPPSYGGSSRYDDYSS 315

Query: 270 SRGGY------RSRSRSRSYS 284
           SR GY       S SRS  YS
Sbjct: 316 SRDGYGGSRDSYSSSRSDLYS 336


>gi|21361809 RNA binding motif protein, X-linked-like 1 [Homo
           sapiens]
          Length = 390

 Score = 73.6 bits (179), Expect = 2e-13
 Identities = 56/165 (33%), Positives = 77/165 (46%), Gaps = 13/165 (7%)

Query: 120 LGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERA 179
           L + GL+  T E+ L  VF KYG I +V ++ D+++ +SRGFAFV FE+  DAK+A    
Sbjct: 10  LFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAARDM 69

Query: 180 NGMELDGRRIRVDF----SITKRPHTPTPGIYMGRPTYGSSRRRDYYDRGYDRGYDDRDY 235
           NG  LDG+ I+V+     S  +  H P P      P  G    R     G  RG   R  
Sbjct: 70  NGKSLDGKAIKVEQATKPSFERGRHGPPPPPRSRGPPRGFGAGRG--GSGGTRGPPSRG- 126

Query: 236 YSRSYRGGGGGGGGWRAAQDRDQIYRRRSPSPYYSRGGYRSRSRS 280
               +   GG    +  +  R  +  +R P P   R G  S  RS
Sbjct: 127 ---GHMDDGGYSMNFNMSSSRGPLPVKRGPPP---RSGGPSPKRS 165



 Score = 33.5 bits (75), Expect = 0.22
 Identities = 43/141 (30%), Positives = 51/141 (36%), Gaps = 29/141 (20%)

Query: 164 VYFENVDDAKEAKERANGMELDGRRIRVDFSITKRPHTPTPGIYMGRPTYGSSRRRDYYD 223
           VY    DD    K+  +  +    R         R + P P  Y  R    SS R DY  
Sbjct: 205 VYLSPRDDGYSTKDSYSSRDYPSSR-------DTRDYAPPPRDYTYRDYGHSSSRDDYPS 257

Query: 224 RGY-DR-GYD-DRDYYSRSYRGGGGGGGGWRAAQDRDQIYRRRSPSPYY----------- 269
           RGY DR GY  DRDY    +  GG     + +  +       R P P Y           
Sbjct: 258 RGYGDRDGYGRDRDY--SDHPSGGSYRDSYESYGNSRSAPLTRGPPPSYGGSSRYDDYSS 315

Query: 270 SRGGY------RSRSRSRSYS 284
           SR GY       S SRS  YS
Sbjct: 316 SRDGYGGSRDSYSSSRSDLYS 336


>gi|153252068 testes-specific heterogenous nuclear ribonucleoprotein
           G-T [Homo sapiens]
          Length = 392

 Score = 73.6 bits (179), Expect = 2e-13
 Identities = 51/137 (37%), Positives = 67/137 (48%), Gaps = 22/137 (16%)

Query: 120 LGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERA 179
           L + GL+L T E+ L   F KYG I +V ++ D+++ +SRGFAFV FE+  DAK A    
Sbjct: 10  LFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKAAARDM 69

Query: 180 NGMELDGRRIRVDFSITKRPHTPTPGIYMGRPTYGSSRRRDYYDRGYDRGYDDRDYYSRS 239
           NG  LDG+ I+V                  +P + SSRR     R   R         R 
Sbjct: 70  NGKSLDGKAIKV--------------AQATKPAFESSRRGPPPPRSRGR--------PRF 107

Query: 240 YRGGGGGGGGWRAAQDR 256
            RG  GGGGG R +  R
Sbjct: 108 LRGTRGGGGGPRRSPSR 124



 Score = 29.6 bits (65), Expect = 3.2
 Identities = 42/126 (33%), Positives = 44/126 (34%), Gaps = 42/126 (33%)

Query: 198 RPHTPTPGIYMGRPTYGSSRRRDYYDRGY-DR---GYDDRDYYSRSYRG----------- 242
           R   P+PG Y  R    SS R D   RGY DR   G  DRDY     RG           
Sbjct: 229 RGFAPSPGEYTHRDYGHSSVRDDCPLRGYSDRDGYGGRDRDYGDHLSRGSHREPFESYGE 288

Query: 243 ------GGG-----GGGGWRAAQDRDQIYRRRSPSPY----------YSRGGYRSRSRSR 281
                 G G     GGGG      R + YR  SP  Y          Y R    SR R R
Sbjct: 289 LRGAAPGRGTPPSYGGGG------RYEEYRGYSPDAYSGGRDSYSSSYGRSDRYSRGRHR 342

Query: 282 SYSPRR 287
              P R
Sbjct: 343 VGRPDR 348


>gi|116734698 RNA binding motif protein 23 isoform 3 [Homo sapiens]
          Length = 405

 Score = 73.2 bits (178), Expect = 3e-13
 Identities = 57/164 (34%), Positives = 76/164 (46%), Gaps = 17/164 (10%)

Query: 6   EQNYGERESRSASRSGSAHGSGKSARHTPARSRSKEDSRRSRSKSRSRS-ESRSRSRRSS 64
           +++Y    + S S SG+      +   T  RSR ++  RR  S+SRS   + R RSR   
Sbjct: 31  KKDYPSNTTSSTSNSGNETSGSSTIGETSNRSRDRDRYRRRNSRSRSPGRQCRHRSRSWD 90

Query: 65  RRHYTRSRSRSRSHRRSRSRSYSRDYRRRHSHSHSPMSTRRRHVGNRANPDPNCCLGVFG 124
           RRH   S SRSR HRR               H  SP       V N  +P+      VF 
Sbjct: 91  RRH--GSESRSRDHRRED-----------RVHYRSPPLATGEPVDN-LSPEERDARTVFC 136

Query: 125 LSLYTT--ERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYF 166
           + L      RDL + FS  G + DV I+ D+ SRRS+G A+V F
Sbjct: 137 MQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEF 180



 Score = 51.6 bits (122), Expect = 8e-07
 Identities = 27/72 (37%), Positives = 42/72 (58%)

Query: 120 LGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERA 179
           L V  L    TE  LR +F  +G I ++ ++ D  + RS+G+ F+ F + + A+ A E+ 
Sbjct: 231 LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQL 290

Query: 180 NGMELDGRRIRV 191
           NG EL GR +RV
Sbjct: 291 NGFELAGRPMRV 302


>gi|119226260 calcium homeostasis endoplasmic reticulum protein
           [Homo sapiens]
          Length = 916

 Score = 73.2 bits (178), Expect = 3e-13
 Identities = 57/118 (48%), Positives = 67/118 (56%), Gaps = 6/118 (5%)

Query: 5   GEQNYGERESRSASRSGSAHGSGKSARHTPARSRSKEDSRRSRSKSRSRSESRSRSRRSS 64
           G++      SRS SRS S   S  S+R     S+S     RSRS+S SRS SRSRSR  S
Sbjct: 728 GQEKRNSGPSRSRSRSKSRGRS--SSRSNSRSSKSSGSYSRSRSRSCSRSYSRSRSRSRS 785

Query: 65  RRHYTRSRSRSRSHRRSRSRSYSRDYRRRHSHSHSPMSTRRRHVG-NRANPDPNCCLG 121
           R   +RSRSRS+S  RSRS+SYS   RRR S S SP       +G N A P P+  LG
Sbjct: 786 RSRSSRSRSRSQS--RSRSKSYSPG-RRRRSRSRSPTPPSSAGLGSNSAPPIPDSRLG 840



 Score = 58.5 bits (140), Expect = 6e-09
 Identities = 53/125 (42%), Positives = 62/125 (49%), Gaps = 7/125 (5%)

Query: 2   SDSGEQNYGERESRSASRSGSAHGSGKSARHTPARSRSKEDSR-RSRSKSRSRSESRSRS 60
           S+  EQN      R+  R+    G  K     P+RSRS+  SR RS S+S SRS   S S
Sbjct: 705 SEGWEQNGLYEFFRAKMRARRRKGQEKR-NSGPSRSRSRSKSRGRSSSRSNSRSSKSSGS 763

Query: 61  -RRSSRRHYTRSRSRSRSHRRSR---SRSYSRDYRRRHSHSHSPMSTRRRHVGNRANPDP 116
             RS  R  +RS SRSRS  RSR   SRS SR   R  S S+SP   RRR       P  
Sbjct: 764 YSRSRSRSCSRSYSRSRSRSRSRSRSSRSRSRSQSRSRSKSYSP-GRRRRSRSRSPTPPS 822

Query: 117 NCCLG 121
           +  LG
Sbjct: 823 SAGLG 827


>gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens]
          Length = 494

 Score = 72.8 bits (177), Expect = 3e-13
 Identities = 45/91 (49%), Positives = 59/91 (64%), Gaps = 10/91 (10%)

Query: 7   QNYGERESRSASRSGSAH--------GSGKSARHTPARSRSKEDSRRSRSKSRSRSESRS 58
           ++Y    S S SRS S H        GS KS+ H+ +RSRS+  SR SRSKSRSRS+SRS
Sbjct: 183 RSYSRSRSHSRSRSRSRHSRKSRSRSGSSKSS-HSKSRSRSRSGSR-SRSKSRSRSQSRS 240

Query: 59  RSRRSSRRHYTRSRSRSRSHRRSRSRSYSRD 89
           RS++   R  ++ +SRSRSH   +SRS S+D
Sbjct: 241 RSKKEKSRSPSKEKSRSRSHSAGKSRSKSKD 271



 Score = 63.5 bits (153), Expect = 2e-10
 Identities = 46/93 (49%), Positives = 58/93 (62%), Gaps = 6/93 (6%)

Query: 6   EQNYGERESRSASRSGSAHGSGKSARHTPARSRSKE-DSRRSRSKSRSRSESRSRSRRSS 64
           E   G R  RS SRS S   S   +RH+  +SRS+   S+ S SKSRSRS S SRSR  S
Sbjct: 174 EDKPGSRRRRSYSRSRSHSRSRSRSRHS-RKSRSRSGSSKSSHSKSRSRSRSGSRSRSKS 232

Query: 65  RRHYTRSRSRSRSHRRSRSRSYSRDYRRRHSHS 97
           R   +RS+SRSRS ++ +SRS S++  R  SHS
Sbjct: 233 R---SRSQSRSRS-KKEKSRSPSKEKSRSRSHS 261



 Score = 59.7 bits (143), Expect = 3e-09
 Identities = 50/139 (35%), Positives = 65/139 (46%), Gaps = 35/139 (25%)

Query: 2   SDSGEQNYGERESRSASRSGSAHGSGKSARHTPARSRSKEDSRRS------RSKSRSRSE 55
           S SG       +SRS SRSGS   S KS   + +RSRSK++  RS      RS+S S  +
Sbjct: 206 SRSGSSKSSHSKSRSRSRSGSRSRS-KSRSRSQSRSRSKKEKSRSPSKEKSRSRSHSAGK 264

Query: 56  SRSRSR------------------RSSRRHYTRSRSRSRSHRR----------SRSRSYS 87
           SRS+S+                  RS  RH ++S+SRSRS  R          SR RS  
Sbjct: 265 SRSKSKDQAEEKIQNNDNVGKPKSRSPSRHKSKSKSRSRSQERRVEEEKRGSVSRGRSQE 324

Query: 88  RDYRRRHSHSHSPMSTRRR 106
           +  R+  S S S   +R R
Sbjct: 325 KSLRQSRSRSRSKGGSRSR 343



 Score = 57.0 bits (136), Expect = 2e-08
 Identities = 46/107 (42%), Positives = 56/107 (52%), Gaps = 10/107 (9%)

Query: 2   SDSGEQNYGERESRSASRSGSAHGSGKSARHTPARSRSKEDSR---RSRSKSRSRSESRS 58
           S S E+   E +  S SR  S     KS R + +RSRSK  SR   RSRSKS+ + + R 
Sbjct: 302 SRSQERRVEEEKRGSVSRGRSQE---KSLRQSRSRSRSKGGSRSRSRSRSKSKDKRKGRK 358

Query: 59  RSRRSSRRHYTRSRSRSRSHRRSRSRSYSRDYRRRHSHSHSPMSTRR 105
           RSR  SR   +RSRSRS+S  RSR R   RD +   S       T R
Sbjct: 359 RSREESR---SRSRSRSKS-ERSRKRGSKRDSKAGSSKKKKKEDTDR 401



 Score = 56.6 bits (135), Expect = 2e-08
 Identities = 42/112 (37%), Positives = 56/112 (50%), Gaps = 11/112 (9%)

Query: 1   MSDSGEQNYGERESRSASRSGSAHGSGKSARHTPARSRSKEDSR-RSRSKSRSRSESRSR 59
           +S    Q    R+SRS SRS    G  +S   + ++S+ K   R RSR +SRSRS SRS+
Sbjct: 317 VSRGRSQEKSLRQSRSRSRS---KGGSRSRSRSRSKSKDKRKGRKRSREESRSRSRSRSK 373

Query: 60  SRRSSRRHYTRSRSRSRSHR-------RSRSRSYSRDYRRRHSHSHSPMSTR 104
           S RS +R   R      S +       RS+SRS SR   +   H+ S  S R
Sbjct: 374 SERSRKRGSKRDSKAGSSKKKKKEDTDRSQSRSPSRSVSKEREHAKSESSQR 425



 Score = 55.8 bits (133), Expect = 4e-08
 Identities = 45/113 (39%), Positives = 57/113 (50%), Gaps = 15/113 (13%)

Query: 8   NYGERESRSASRSGSAHGSGKSA---------RHTPARSRSKEDS-----RRSRSKSRSR 53
           N G+ +SRS SR  S   S   +         R + +R RS+E S      RSRSK  SR
Sbjct: 282 NVGKPKSRSPSRHKSKSKSRSRSQERRVEEEKRGSVSRGRSQEKSLRQSRSRSRSKGGSR 341

Query: 54  SESRSRSRRSSRRHYTRSRSRSRSHRRSRSRSYSRDYRRRHSHSHSPMSTRRR 106
           S SRSRS+   +R   R RSR  S  RSRSRS S   R+R S   S   + ++
Sbjct: 342 SRSRSRSKSKDKRK-GRKRSREESRSRSRSRSKSERSRKRGSKRDSKAGSSKK 393



 Score = 55.1 bits (131), Expect = 7e-08
 Identities = 39/81 (48%), Positives = 45/81 (55%), Gaps = 14/81 (17%)

Query: 40  KEDSRRSRSKSRSRSESRSRSRR-----------SSRRHYTRSRSRSRSHRRSRSRSYSR 88
           K  SRR RS SRSRS SRSRSR            SS+  +++SRSRSRS  RSRS+S SR
Sbjct: 176 KPGSRRRRSYSRSRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRSRSRSGSRSRSKSRSR 235

Query: 89  DYRRRHS---HSHSPMSTRRR 106
              R  S    S SP   + R
Sbjct: 236 SQSRSRSKKEKSRSPSKEKSR 256



 Score = 54.7 bits (130), Expect = 9e-08
 Identities = 39/90 (43%), Positives = 53/90 (58%), Gaps = 9/90 (10%)

Query: 2   SDSGEQNYGERESRSASRSGSAHGSGKSARHTPARSRSKEDSRR---SRSKSRSRSESRS 58
           S S E+ + + ES      G +  +G + + T +RSRS   S+    S S+SRS+S S++
Sbjct: 410 SVSKEREHAKSESSQREGRGESENAGTN-QETRSRSRSNSKSKPNLPSESRSRSKSASKT 468

Query: 59  RSRRSSRRHYTRSRSRSRSHRRSRSRSYSR 88
           RSR  SR     SRS SRS  RSRSRS+SR
Sbjct: 469 RSRSKSR-----SRSASRSPSRSRSRSHSR 493



 Score = 54.3 bits (129), Expect = 1e-07
 Identities = 42/133 (31%), Positives = 61/133 (45%), Gaps = 37/133 (27%)

Query: 4   SGEQNYGERESRSASRSGSAHGSGKSARHTPARSRSKEDSRRSRSKSRSRS--------- 54
           S E++     SRS S      GS + ++   ++ + KED+ RS+S+S SRS         
Sbjct: 360 SREESRSRSRSRSKSERSRKRGSKRDSKAGSSKKKKKEDTDRSQSRSPSRSVSKEREHAK 419

Query: 55  -------------------ESRSRSRRSSR---------RHYTRSRSRSRSHRRSRSRSY 86
                              E+RSRSR +S+         R  ++S S++RS  +SRSRS 
Sbjct: 420 SESSQREGRGESENAGTNQETRSRSRSNSKSKPNLPSESRSRSKSASKTRSRSKSRSRSA 479

Query: 87  SRDYRRRHSHSHS 99
           SR   R  S SHS
Sbjct: 480 SRSPSRSRSRSHS 492



 Score = 53.5 bits (127), Expect = 2e-07
 Identities = 48/148 (32%), Positives = 65/148 (43%), Gaps = 43/148 (29%)

Query: 2   SDSGEQNYGERESRSASRSGS--------AHGSGKSARHTPARSRSKEDSR--------- 44
           S SG ++  +  SRS SRS S        +    +S  H+  +SRSK   +         
Sbjct: 222 SRSGSRSRSKSRSRSQSRSRSKKEKSRSPSKEKSRSRSHSAGKSRSKSKDQAEEKIQNND 281

Query: 45  -----RSRSKSRSRSESRSRSRRSSRR-------------------HYTRSRSRSR--SH 78
                +SRS SR +S+S+SRSR   RR                     +RSRSRS+  S 
Sbjct: 282 NVGKPKSRSPSRHKSKSKSRSRSQERRVEEEKRGSVSRGRSQEKSLRQSRSRSRSKGGSR 341

Query: 79  RRSRSRSYSRDYRRRHSHSHSPMSTRRR 106
            RSRSRS S+D R+    S     +R R
Sbjct: 342 SRSRSRSKSKDKRKGRKRSREESRSRSR 369



 Score = 44.3 bits (103), Expect = 1e-04
 Identities = 58/211 (27%), Positives = 78/211 (36%), Gaps = 64/211 (30%)

Query: 125 LSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMEL 184
           LS    ERD+   F  YG I +V +          G+ FV F+++ DA +A    NG +L
Sbjct: 9   LSYQARERDVERFFKGYGKILEVDL--------KNGYGFVEFDDLRDADDAVYELNGKDL 60

Query: 185 DGRRIRVDFSITKRPHTPTPGIY-MGRPTYGSSRR-RDYYDRGYDRGY------------ 230
            G R+ V+ +   R      G Y  GR  YG  R  RD Y       Y            
Sbjct: 61  CGERVIVEHARGPR----RDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSSRCS 116

Query: 231 --DDRDY--------YSRSYRGGGG------------------------GGGGWRAAQDR 256
             D +DY        Y+ +++G                            G   R  +D+
Sbjct: 117 WQDLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKIRLVEDK 176

Query: 257 DQIYRRRSPSPYYSRGGYRSRSRSRSYSPRR 287
               RRRS    YSR    SRSRSRS   R+
Sbjct: 177 PGSRRRRS----YSRSRSHSRSRSRSRHSRK 203



 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 48/166 (28%), Positives = 75/166 (45%), Gaps = 30/166 (18%)

Query: 122 VFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANG 181
           V  LS   + +DL++   + G   +V+     + R++ G   + F +  D K A E+ +G
Sbjct: 108 VENLSSRCSWQDLKDYMRQAG---EVTYADAHKGRKNEGV--IEFVSYSDMKRALEKLDG 162

Query: 182 MELDGRRIRVDFSITKRPHTPTPGIYMGRPTYGSSRRRDY-YDRGYDRGYDDRDYYSRSY 240
            E++GR+IR+   +  +P              GS RRR Y   R + R    R  +SR  
Sbjct: 163 TEVNGRKIRL---VEDKP--------------GSRRRRSYSRSRSHSRS-RSRSRHSRKS 204

Query: 241 RGGGGGGGGWRAAQDRDQIYRRRSPSPYYSRGGYRSRSRSRSYSPR 286
           R   G      +++      R RS S   SR   RSRS+SRS S +
Sbjct: 205 RSRSG------SSKSSHSKSRSRSRSGSRSRSKSRSRSQSRSRSKK 244



 Score = 35.8 bits (81), Expect = 0.045
 Identities = 66/261 (25%), Positives = 98/261 (37%), Gaps = 49/261 (18%)

Query: 36  RSRSKEDSRRSRSKSRSRSESRSRSRRSSRRHYTRSRS--RSRSHRRSRSRSYSRDYRRR 93
           R+  K D      +     E +  SRR  RR Y+RSRS  RSRS  R   +S SR    +
Sbjct: 155 RALEKLDGTEVNGRKIRLVEDKPGSRR--RRSYSRSRSHSRSRSRSRHSRKSRSRSGSSK 212

Query: 94  HSHSHSPMSTRRRHVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQ 153
            SHS S   +R    G+R+                +  R      SK     + S    +
Sbjct: 213 SSHSKSRSRSRS---GSRSRSK-------------SRSRSQSRSRSK----KEKSRSPSK 252

Query: 154 QSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKRPHTPTPGIYMGRPTY 213
           +  RSR  +             K R+   +    +I+ + ++ K P + +P  +  +   
Sbjct: 253 EKSRSRSHS-----------AGKSRSKSKDQAEEKIQNNDNVGK-PKSRSPSRHKSKSKS 300

Query: 214 GS--------SRRRDYYDRGYDRGYDDRDYYSRSYRGGGGGGGGWRAAQDRDQIYRRRSP 265
            S          +R    RG  +    R   SRS   GG        ++ +D+   R+  
Sbjct: 301 RSRSQERRVEEEKRGSVSRGRSQEKSLRQSRSRSRSKGGSRSRSRSRSKSKDKRKGRKR- 359

Query: 266 SPYYSRGGYRSRSRSRSYSPR 286
               SR   RSRSRSRS S R
Sbjct: 360 ----SREESRSRSRSRSKSER 376


>gi|15055543 splicing factor, arginine/serine-rich 2B [Homo sapiens]
          Length = 282

 Score = 72.8 bits (177), Expect = 3e-13
 Identities = 60/169 (35%), Positives = 78/169 (46%), Gaps = 24/169 (14%)

Query: 120 LGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERA 179
           L V  L+  T+   LR VF KYG + DV I  +  ++  RGFAFV F +  DA++A+   
Sbjct: 16  LKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAM 75

Query: 180 NGMELDGRRIRVDFSITKRPHTPTPGIYMGRPTYGSSRRRDYYDRGYDRGYDDRDYYSRS 239
           +G ELDGR +RV  +              GR     SR+ +   R    GY  R   SRS
Sbjct: 76  DGAELDGRELRVQVA------------RYGRRDLPRSRQGEPRGRSRGGGYGRR---SRS 120

Query: 240 YRGGGGGGGGWRAAQDRDQIYRRRSPSPYYSRGGYRSRSRSRSYSPRRY 288
           Y        G R+   R + +R RS  P  SR   RSR R   YS   Y
Sbjct: 121 Y--------GRRSRSPRRR-HRSRSRGPSCSRSRSRSRYRGSRYSRSPY 160



 Score = 52.8 bits (125), Expect = 4e-07
 Identities = 44/109 (40%), Positives = 52/109 (47%), Gaps = 10/109 (9%)

Query: 9   YGERE---SRSASRSGSAHGSGKSARHTPARSRSKEDSRRSRSKSRSRSESRSRSR---- 61
           YG R+   SR     G + G G   R      RS+   RR RS+SR  S SRSRSR    
Sbjct: 92  YGRRDLPRSRQGEPRGRSRGGGYGRRSRSYGRRSRSPRRRHRSRSRGPSCSRSRSRSRYR 151

Query: 62  --RSSRRHYTRS-RSRSRSHRRSRSRSYSRDYRRRHSHSHSPMSTRRRH 107
             R SR  Y+RS  SRSR  R   SRS  R+ R   SH  S   +  R+
Sbjct: 152 GSRYSRSPYSRSPYSRSRYSRSPYSRSRYRESRYGGSHYSSSGYSNSRY 200



 Score = 46.6 bits (109), Expect = 3e-05
 Identities = 32/71 (45%), Positives = 45/71 (63%), Gaps = 4/71 (5%)

Query: 14  SRSASRSGSAHGSGKSARHTPARSRSKEDSRRSRSKSRSRSESRSRS-RRSSRRHYTRSR 72
           SRS S+SGS+  S  ++    + +R  + S  SRS+SRSRS S +RS  R S+R   +S+
Sbjct: 206 SRSHSKSGSSTSSRSASTSKSSSARRSKSSSVSRSRSRSRSSSMTRSPPRVSKR---KSK 262

Query: 73  SRSRSHRRSRS 83
           SRSRS R  +S
Sbjct: 263 SRSRSKRPPKS 273



 Score = 45.8 bits (107), Expect = 4e-05
 Identities = 37/94 (39%), Positives = 48/94 (51%), Gaps = 4/94 (4%)

Query: 12  RESR--SASRSGSAHGSGKSARHTPARSRSKE-DSRRSRSKSRSRSESRSRSRRSSRRHY 68
           RESR   +  S S + + + +R+  +RS SK   S  SRS S S+S S  RS+ SS    
Sbjct: 181 RESRYGGSHYSSSGYSNSRYSRYHSSRSHSKSGSSTSSRSASTSKSSSARRSKSSSVSR- 239

Query: 69  TRSRSRSRSHRRSRSRSYSRDYRRRHSHSHSPMS 102
           +RSRSRS S  RS  R   R  + R      P S
Sbjct: 240 SRSRSRSSSMTRSPPRVSKRKSKSRSRSKRPPKS 273



 Score = 45.8 bits (107), Expect = 4e-05
 Identities = 45/88 (51%), Positives = 51/88 (57%), Gaps = 11/88 (12%)

Query: 2   SDSGEQNYGERESR-SASRSGSAHGSGKSARHTPARSRSKEDSRRSRSKSRSRSESRSRS 60
           S SG  N   R SR  +SRS S  GS  S+R   + S SK  S R RSKS S S SRSRS
Sbjct: 191 SSSGYSN--SRYSRYHSSRSHSKSGSSTSSR---SASTSKSSSAR-RSKSSSVSRSRSRS 244

Query: 61  RRSSRRHYTRSRSRSRSHRRSRSRSYSR 88
           R SS    TRS  R  S R+S+SRS S+
Sbjct: 245 RSSS---MTRSPPRV-SKRKSKSRSRSK 268



 Score = 43.1 bits (100), Expect = 3e-04
 Identities = 38/102 (37%), Positives = 47/102 (46%), Gaps = 9/102 (8%)

Query: 14  SRSASRS---GSAHGSGKSARHTPARSR------SKEDSRRSRSKSRSRSESRSRSRRSS 64
           SRS SRS   GS +     +R   +RSR      S+   R SR      S S   + R S
Sbjct: 142 SRSRSRSRYRGSRYSRSPYSRSPYSRSRYSRSPYSRSRYRESRYGGSHYSSSGYSNSRYS 201

Query: 65  RRHYTRSRSRSRSHRRSRSRSYSRDYRRRHSHSHSPMSTRRR 106
           R H +RS S+S S   SRS S S+    R S S S   +R R
Sbjct: 202 RYHSSRSHSKSGSSTSSRSASTSKSSSARRSKSSSVSRSRSR 243



 Score = 41.2 bits (95), Expect = 0.001
 Identities = 35/94 (37%), Positives = 43/94 (45%), Gaps = 1/94 (1%)

Query: 14  SRSASRSGSAHGSGKSARHTPARSRSKEDSRRSRSKSRSRSESRSRSR-RSSRRHYTRSR 72
           SRS  R     GS  S+        S+  S RS SKS S + SRS S  +SS    ++S 
Sbjct: 176 SRSRYRESRYGGSHYSSSGYSNSRYSRYHSSRSHSKSGSSTSSRSASTSKSSSARRSKSS 235

Query: 73  SRSRSHRRSRSRSYSRDYRRRHSHSHSPMSTRRR 106
           S SRS  RSRS S +R   R         S  +R
Sbjct: 236 SVSRSRSRSRSSSMTRSPPRVSKRKSKSRSRSKR 269



 Score = 35.4 bits (80), Expect = 0.058
 Identities = 34/100 (34%), Positives = 46/100 (46%), Gaps = 7/100 (7%)

Query: 9   YGERESRSASRS-GSAHGSGKSARHTPARSRSKEDSRRSRSKSRSRSESRSRSRRSSRRH 67
           +  R+++ A  +   A   G+  R   AR   ++  R  + + R RS      RRS R +
Sbjct: 63  HDRRDAQDAEAAMDGAELDGRELRVQVARYGRRDLPRSRQGEPRGRSRGGGYGRRS-RSY 121

Query: 68  YTRSRSRSRSHR-RSRS----RSYSRDYRRRHSHSHSPMS 102
             RSRS  R HR RSR     RS SR   R   +S SP S
Sbjct: 122 GRRSRSPRRRHRSRSRGPSCSRSRSRSRYRGSRYSRSPYS 161



 Score = 33.9 bits (76), Expect = 0.17
 Identities = 29/85 (34%), Positives = 34/85 (40%), Gaps = 8/85 (9%)

Query: 210 RPTYGSSRRRD-------YYDRGYDRGYDDRDYYSRSYRGGGGGGGGWRAAQDRDQIYRR 262
           R  Y  SR R+       Y   GY      R + SRS+   G      R+A        R
Sbjct: 172 RSPYSRSRYRESRYGGSHYSSSGYSNSRYSRYHSSRSHSKSGSSTSS-RSASTSKSSSAR 230

Query: 263 RSPSPYYSRGGYRSRSRSRSYSPRR 287
           RS S   SR   RSRS S + SP R
Sbjct: 231 RSKSSSVSRSRSRSRSSSMTRSPPR 255


>gi|56090527 RNA binding motif protein, Y-linked, family 1, member E
           [Homo sapiens]
          Length = 496

 Score = 71.2 bits (173), Expect = 1e-12
 Identities = 51/136 (37%), Positives = 72/136 (52%), Gaps = 18/136 (13%)

Query: 120 LGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERA 179
           L + GL+  T E+ L+ VF K+GPI++V ++ D+ S+ SRGFAF+ FEN  DAK A +  
Sbjct: 10  LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSK-SRGFAFITFENPADAKNAAKDM 68

Query: 180 NGMELDGRRIRVDFSITKRPHTPTPGIYMGRPTYGSSRRRDYYDRGYDRGYDDRDYYSRS 239
           NG  L G+ I+V+ +  K+P   + G    R    SSR R                  RS
Sbjct: 69  NGKSLHGKAIKVEQA--KKPSFQSGG---RRRPPASSRNR------------SPSGSLRS 111

Query: 240 YRGGGGGGGGWRAAQD 255
            RG  GG  GW  +Q+
Sbjct: 112 ARGSRGGTRGWLPSQE 127



 Score = 36.2 bits (82), Expect = 0.034
 Identities = 70/285 (24%), Positives = 103/285 (36%), Gaps = 35/285 (12%)

Query: 7   QNYGERESRSASRSGSAHGSGKSARHTPARSR----SKEDSRRSRSKSRSRSESRSRSRR 62
           Q+ G R   ++SR+ S  GS +SAR +   +R    S+E        +     S SR   
Sbjct: 89  QSGGRRRPPASSRNRSPSGSLRSARGSRGGTRGWLPSQEGHLDDGGYTPDLKMSYSRGLI 148

Query: 63  SSRRHYTRSRSRSRSHRRSRSRSYSRDYRRRHSHSHSPMSTRRRHVGNRANPDPNCCLGV 122
             +R  + SRS     ++S   + +R        S  PMS RR + G    P     +  
Sbjct: 149 PVKRGPS-SRSGGPPPKKSAPSAVARS--NSWMGSQGPMSQRRENYGV---PPRRATISS 202

Query: 123 FGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGM 182
           +     +T  D         P    +  Y   SR      + Y +N    ++        
Sbjct: 203 WRNDRMSTRHDGYATNDGNHPSCQETRDYAPPSR-----GYAYRDNGHSNRDEHSSRGYR 257

Query: 183 ELDGRRIRVDFSITKRPHTPTPGIYMGRPTYGSSRRRDYYDRGYDRGYDDRDYYSRSYRG 242
                R   D++   R H            YG SRR + Y RGY      R+  +R Y  
Sbjct: 258 NHRSSRETRDYAPPSRGHAYRD--------YGHSRRDESYSRGYRNRRSSRE--TREYAP 307

Query: 243 GGGGGGGWRAAQDRDQIYRRRSPSPYYSRG--GYRSRSRSRSYSP 285
              G G       RD  + RR  S  YSRG   + S   +R Y+P
Sbjct: 308 PSRGHG------YRDYGHSRRHES--YSRGYRNHPSSRETRDYAP 344



 Score = 31.6 bits (70), Expect = 0.84
 Identities = 32/105 (30%), Positives = 40/105 (38%), Gaps = 13/105 (12%)

Query: 3   DSGEQNYGERESRS--------ASRSGSAHGSGKSARHTPARSRSKEDSR--RSRSKSRS 52
           D+G  N  E  SR          +R  +    G + R      R +  SR  R+R  SR 
Sbjct: 242 DNGHSNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYRNRRSSRE 301

Query: 53  RSESRSRSRRSSRRHYTRSR---SRSRSHRRSRSRSYSRDYRRRH 94
             E    SR    R Y  SR   S SR +R   S   +RDY   H
Sbjct: 302 TREYAPPSRGHGYRDYGHSRRHESYSRGYRNHPSSRETRDYAPPH 346


>gi|54633344 RNA binding motif protein, Y-linked, family 1, member B
           [Homo sapiens]
          Length = 496

 Score = 71.2 bits (173), Expect = 1e-12
 Identities = 51/136 (37%), Positives = 72/136 (52%), Gaps = 18/136 (13%)

Query: 120 LGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERA 179
           L + GL+  T E+ L+ VF K+GPI++V ++ D+ S+ SRGFAF+ FEN  DAK A +  
Sbjct: 10  LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSK-SRGFAFITFENPADAKNAAKDM 68

Query: 180 NGMELDGRRIRVDFSITKRPHTPTPGIYMGRPTYGSSRRRDYYDRGYDRGYDDRDYYSRS 239
           NG  L G+ I+V+ +  K+P   + G    R    SSR R                  RS
Sbjct: 69  NGKSLHGKAIKVEQA--KKPSFQSGG---RRRPPASSRNR------------SPSGSLRS 111

Query: 240 YRGGGGGGGGWRAAQD 255
            RG  GG  GW  +Q+
Sbjct: 112 ARGSRGGTRGWLPSQE 127



 Score = 36.2 bits (82), Expect = 0.034
 Identities = 70/285 (24%), Positives = 103/285 (36%), Gaps = 35/285 (12%)

Query: 7   QNYGERESRSASRSGSAHGSGKSARHTPARSR----SKEDSRRSRSKSRSRSESRSRSRR 62
           Q+ G R   ++SR+ S  GS +SAR +   +R    S+E        +     S SR   
Sbjct: 89  QSGGRRRPPASSRNRSPSGSLRSARGSRGGTRGWLPSQEGHLDDGGYTPDLKMSYSRGLI 148

Query: 63  SSRRHYTRSRSRSRSHRRSRSRSYSRDYRRRHSHSHSPMSTRRRHVGNRANPDPNCCLGV 122
             +R  + SRS     ++S   + +R        S  PMS RR + G    P     +  
Sbjct: 149 PVKRGPS-SRSGGPPPKKSAPSAVARS--NSWMGSQGPMSQRRENYGV---PPRRATISS 202

Query: 123 FGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGM 182
           +     +T  D         P    +  Y   SR      + Y +N    ++        
Sbjct: 203 WRNDRMSTRHDGYATNDGNHPSCQETRDYAPPSR-----GYAYRDNGHSNRDEHSSRGYR 257

Query: 183 ELDGRRIRVDFSITKRPHTPTPGIYMGRPTYGSSRRRDYYDRGYDRGYDDRDYYSRSYRG 242
                R   D++   R H            YG SRR + Y RGY      R+  +R Y  
Sbjct: 258 NHRSSRETRDYAPPSRGHAYRD--------YGHSRRDESYSRGYRNRRSSRE--TREYAP 307

Query: 243 GGGGGGGWRAAQDRDQIYRRRSPSPYYSRG--GYRSRSRSRSYSP 285
              G G       RD  + RR  S  YSRG   + S   +R Y+P
Sbjct: 308 PSRGHG------YRDYGHSRRHES--YSRGYRNHPSSRETRDYAP 344



 Score = 31.6 bits (70), Expect = 0.84
 Identities = 32/105 (30%), Positives = 40/105 (38%), Gaps = 13/105 (12%)

Query: 3   DSGEQNYGERESRS--------ASRSGSAHGSGKSARHTPARSRSKEDSR--RSRSKSRS 52
           D+G  N  E  SR          +R  +    G + R      R +  SR  R+R  SR 
Sbjct: 242 DNGHSNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYRNRRSSRE 301

Query: 53  RSESRSRSRRSSRRHYTRSR---SRSRSHRRSRSRSYSRDYRRRH 94
             E    SR    R Y  SR   S SR +R   S   +RDY   H
Sbjct: 302 TREYAPPSRGHGYRDYGHSRRHESYSRGYRNHPSSRETRDYAPPH 346


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.131    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,401,377
Number of Sequences: 37866
Number of extensions: 560701
Number of successful extensions: 15305
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 243
Number of HSP's that attempted gapping in prelim test: 5124
Number of HSP's gapped (non-prelim): 4511
length of query: 288
length of database: 18,247,518
effective HSP length: 101
effective length of query: 187
effective length of database: 14,423,052
effective search space: 2697110724
effective search space used: 2697110724
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.