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Search of human proteins with 4759068
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4759068 cytochrome oxidase deficient homolog 1 [Homo
sapiens]
(301 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4759068 cytochrome oxidase deficient homolog 1 [Homo sapiens] 625 e-179
gi|153791313 cytochrome oxidase deficient homolog 2 [Homo sapiens] 211 6e-55
gi|154937344 complement component 1, q subcomponent-like 2 [Homo... 35 0.11
gi|237757326 synaptojanin 1 isoform d [Homo sapiens] 34 0.14
gi|169211484 PREDICTED: hypothetical protein [Homo sapiens] 33 0.31
gi|169211938 PREDICTED: hypothetical protein [Homo sapiens] 33 0.31
gi|209364594 acyl-Coenzyme A binding domain containing 4 isoform... 33 0.31
gi|209364589 acyl-Coenzyme A binding domain containing 4 isoform... 33 0.31
gi|169169912 PREDICTED: hypothetical protein [Homo sapiens] 33 0.40
gi|239749005 PREDICTED: hypothetical protein [Homo sapiens] 33 0.40
gi|239743025 PREDICTED: hypothetical protein [Homo sapiens] 33 0.40
gi|50428940 mediator complex subunit 25 [Homo sapiens] 33 0.40
gi|40556370 PHD finger protein 15 [Homo sapiens] 32 0.53
gi|239744252 PREDICTED: hypothetical protein XP_002343084 [Homo ... 32 0.69
gi|58331144 proline rich region 18 [Homo sapiens] 32 0.69
gi|169171680 PREDICTED: hypothetical protein [Homo sapiens] 32 0.90
gi|224028259 nuclear factor erythroid 2-like 2 isoform 3 [Homo s... 31 1.5
gi|239745658 PREDICTED: hypothetical protein XP_002344164 [Homo ... 31 1.5
gi|239742765 PREDICTED: hypothetical protein XP_002342631 [Homo ... 31 1.5
gi|239740976 PREDICTED: hypothetical protein XP_002344291 [Homo ... 31 1.5
gi|170016069 zinc finger, CCHC domain containing 2 [Homo sapiens] 31 1.5
gi|17388799 DnaJ (Hsp40) homolog, subfamily B, member 6 isoform ... 31 1.5
gi|116642889 cyclic nucleotide gated channel beta 3 [Homo sapiens] 31 1.5
gi|169209217 PREDICTED: similar to hCG2042704 [Homo sapiens] 30 2.0
gi|239745068 PREDICTED: similar to hCG2042704 [Homo sapiens] 30 2.0
gi|239508694 PREDICTED: hypothetical protein [Homo sapiens] 30 2.0
gi|46275820 tetratricopeptide repeat domain 9B [Homo sapiens] 30 2.0
gi|169211520 PREDICTED: hypothetical protein [Homo sapiens] 30 2.6
gi|7662310 FERM, RhoGEF and pleckstrin domain protein 2 [Homo sa... 30 2.6
gi|5453802 neural retina leucine zipper [Homo sapiens] 30 3.4
>gi|4759068 cytochrome oxidase deficient homolog 1 [Homo sapiens]
Length = 301
Score = 625 bits (1613), Expect = e-179
Identities = 301/301 (100%), Positives = 301/301 (100%)
Query: 1 MAMLVLVPGRVMRPLGGQLWRFLPRGLEFWGPAEGTARVLLRQFCARQAEAWRASGRPGY 60
MAMLVLVPGRVMRPLGGQLWRFLPRGLEFWGPAEGTARVLLRQFCARQAEAWRASGRPGY
Sbjct: 1 MAMLVLVPGRVMRPLGGQLWRFLPRGLEFWGPAEGTARVLLRQFCARQAEAWRASGRPGY 60
Query: 61 CLGTRPLSTARPPPPWSQKGPGDSTRPSKPGPVSWKSLAITFAIGGALLAGMKHVKKEKA 120
CLGTRPLSTARPPPPWSQKGPGDSTRPSKPGPVSWKSLAITFAIGGALLAGMKHVKKEKA
Sbjct: 61 CLGTRPLSTARPPPPWSQKGPGDSTRPSKPGPVSWKSLAITFAIGGALLAGMKHVKKEKA 120
Query: 121 EKLEKERQRHIGKPLLGGPFSLTTHTGERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKM 180
EKLEKERQRHIGKPLLGGPFSLTTHTGERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKM
Sbjct: 121 EKLEKERQRHIGKPLLGGPFSLTTHTGERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKM 180
Query: 181 IQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVDQVARA 240
IQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVDQVARA
Sbjct: 181 IQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVDQVARA 240
Query: 241 YRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNKRKGEIAASIATHMRPYRKK 300
YRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNKRKGEIAASIATHMRPYRKK
Sbjct: 241 YRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNKRKGEIAASIATHMRPYRKK 300
Query: 301 S 301
S
Sbjct: 301 S 301
>gi|153791313 cytochrome oxidase deficient homolog 2 [Homo sapiens]
Length = 266
Score = 211 bits (537), Expect = 6e-55
Identities = 99/224 (44%), Positives = 151/224 (67%), Gaps = 2/224 (0%)
Query: 77 SQKGPGDSTRPSKP-GPVSWKSLAITFAIGGALLAGMKHVKKEKAEKLEKERQRHIGKPL 135
S++GP ++ +P GP L IT G L ++ EK +++R + +
Sbjct: 39 SRQGPAETGGQGQPQGPGLRTRLLITGLFGAGLGGAWLALRAEKERLQQQKRTEALRQAA 98
Query: 136 LG-GPFSLTTHTGERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLP 194
+G G F L H G + D+ GQW+L+YFGFTHCPD+CP+ELEK++QVV ++++ LP
Sbjct: 99 VGQGDFHLLDHRGRARCKADFRGQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLP 158
Query: 195 DLTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVDQVARAYRVYYSPGPKDEDE 254
+ P+FI++DPERD EA+A YV++F P+L+GLTG+ ++V Q + +YRVYY+ GPKDED+
Sbjct: 159 PVQPVFITVDPERDDVEAMARYVQDFHPRLLGLTGSTKQVAQASHSYRVYYNAGPKDEDQ 218
Query: 255 DYIVDHTIIMYLIGPDGEFLDYFGQNKRKGEIAASIATHMRPYR 298
DYIVDH+I +YL+ PDG F DY+G+++ +I+ S+ HM +R
Sbjct: 219 DYIVDHSIAIYLLNPDGLFTDYYGRSRSAEQISDSVRRHMAAFR 262
>gi|154937344 complement component 1, q subcomponent-like 2 [Homo
sapiens]
Length = 287
Score = 34.7 bits (78), Expect = 0.11
Identities = 14/24 (58%), Positives = 16/24 (66%)
Query: 69 TARPPPPWSQKGPGDSTRPSKPGP 92
+A PPPP+ Q GD RP KPGP
Sbjct: 66 SANPPPPFIQGPKGDPGRPGKPGP 89
>gi|237757326 synaptojanin 1 isoform d [Homo sapiens]
Length = 1526
Score = 34.3 bits (77), Expect = 0.14
Identities = 19/77 (24%), Positives = 30/77 (38%)
Query: 64 TRPLSTARPPPPWSQKGPGDSTRPSKPGPVSWKSLAITFAIGGALLAGMKHVKKEKAEKL 123
TRP RPPPP + P + PGP + + T +++ + + A +L
Sbjct: 1113 TRPAPPQRPPPPSGRSQPSPQAGLAGPGPAGYSTARPTIPPRAGVISAPQSHARASAGRL 1172
Query: 124 EKERQRHIGKPLLGGPF 140
E Q + G F
Sbjct: 1173 TPESQSKTSETSKGSTF 1189
Score = 28.1 bits (61), Expect = 9.9
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 65 RPLSTARPPPPWSQKGPGDSTRPSKPGPVSWKS 97
+PL RPPPP P P +P P S +S
Sbjct: 1096 QPLEPKRPPPPRPVAPPTRPAPPQRPPPPSGRS 1128
>gi|169211484 PREDICTED: hypothetical protein [Homo sapiens]
Length = 95
Score = 33.1 bits (74), Expect = 0.31
Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 12/62 (19%)
Query: 30 WGPAEGTARVLLRQFCARQAEAWRASGRPGYCLGTRPLSTARPPPPWSQKGPGDSTRPSK 89
WGPAEG++ +C W RPG+ LG P T PP +G G RP
Sbjct: 6 WGPAEGSSG----SYC------WHQGCRPGHLLGGFP--TQAEGPPGRYQGDGAWCRPEF 53
Query: 90 PG 91
G
Sbjct: 54 AG 55
>gi|169211938 PREDICTED: hypothetical protein [Homo sapiens]
Length = 95
Score = 33.1 bits (74), Expect = 0.31
Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 12/62 (19%)
Query: 30 WGPAEGTARVLLRQFCARQAEAWRASGRPGYCLGTRPLSTARPPPPWSQKGPGDSTRPSK 89
WGPAEG++ +C W RPG+ LG P T PP +G G RP
Sbjct: 6 WGPAEGSSG----SYC------WHQGCRPGHLLGGFP--TQAEGPPGRYQGDGAWCRPEF 53
Query: 90 PG 91
G
Sbjct: 54 AG 55
>gi|209364594 acyl-Coenzyme A binding domain containing 4 isoform 1
[Homo sapiens]
Length = 341
Score = 33.1 bits (74), Expect = 0.31
Identities = 29/81 (35%), Positives = 32/81 (39%), Gaps = 14/81 (17%)
Query: 30 WGPAEGTARVLLRQFCARQAEAWRAS------GR-PGYCLGTRPLSTARPPPPWSQKGPG 82
WG E R R C R AWRA GR PG LG PL + P S GP
Sbjct: 247 WGQFEHYRRACRR--CRRGCRAWRACPGPLSRGRSPGPVLGHGPLGSRGPRCSSSSCGPS 304
Query: 83 DSTRPS-----KPGPVSWKSL 98
S+ S K G W+ L
Sbjct: 305 SSSGSSECFGPKRGDCQWRGL 325
>gi|209364589 acyl-Coenzyme A binding domain containing 4 isoform 1
[Homo sapiens]
Length = 341
Score = 33.1 bits (74), Expect = 0.31
Identities = 29/81 (35%), Positives = 32/81 (39%), Gaps = 14/81 (17%)
Query: 30 WGPAEGTARVLLRQFCARQAEAWRAS------GR-PGYCLGTRPLSTARPPPPWSQKGPG 82
WG E R R C R AWRA GR PG LG PL + P S GP
Sbjct: 247 WGQFEHYRRACRR--CRRGCRAWRACPGPLSRGRSPGPVLGHGPLGSRGPRCSSSSCGPS 304
Query: 83 DSTRPS-----KPGPVSWKSL 98
S+ S K G W+ L
Sbjct: 305 SSSGSSECFGPKRGDCQWRGL 325
>gi|169169912 PREDICTED: hypothetical protein [Homo sapiens]
Length = 184
Score = 32.7 bits (73), Expect = 0.40
Identities = 29/114 (25%), Positives = 45/114 (39%), Gaps = 12/114 (10%)
Query: 24 PRGLEFWGPAEGTARVLLRQFCARQAEAWRASGRPGYCLGTRPLSTARPPPPWSQKGPGD 83
PR G +G R CA + G G R L +A+ P P + G
Sbjct: 70 PRACVCAGSWQGHLGRAARVPCASHTHVGGPGPQAGPACGFRALGSAQSPGPATAAGAPG 129
Query: 84 STRPSKPGPV--SWKS----------LAITFAIGGALLAGMKHVKKEKAEKLEK 125
+R PGPV W++ A T + G + G KH++ ++ +LE+
Sbjct: 130 FSRALSPGPVPPGWRAAPRAGAPHQRAAATGSGGSRSVGGGKHLRIAQSLRLEE 183
>gi|239749005 PREDICTED: hypothetical protein [Homo sapiens]
Length = 178
Score = 32.7 bits (73), Expect = 0.40
Identities = 29/114 (25%), Positives = 45/114 (39%), Gaps = 12/114 (10%)
Query: 24 PRGLEFWGPAEGTARVLLRQFCARQAEAWRASGRPGYCLGTRPLSTARPPPPWSQKGPGD 83
PR G +G R CA + G G R L +A+ P P + G
Sbjct: 64 PRACVCAGSWQGHLGRAARVPCASHTHVGGPGPQAGPACGFRALGSAQSPGPATAAGAPG 123
Query: 84 STRPSKPGPV--SWKS----------LAITFAIGGALLAGMKHVKKEKAEKLEK 125
+R PGPV W++ A T + G + G KH++ ++ +LE+
Sbjct: 124 FSRALSPGPVPPGWRAAPRAGAPHQRAAATGSGGSRSVGGGKHLRIAQSLRLEE 177
>gi|239743025 PREDICTED: hypothetical protein [Homo sapiens]
Length = 178
Score = 32.7 bits (73), Expect = 0.40
Identities = 29/114 (25%), Positives = 45/114 (39%), Gaps = 12/114 (10%)
Query: 24 PRGLEFWGPAEGTARVLLRQFCARQAEAWRASGRPGYCLGTRPLSTARPPPPWSQKGPGD 83
PR G +G R CA + G G R L +A+ P P + G
Sbjct: 64 PRACVCAGSWQGHLGRAARVPCASHTHVGGPGPQAGPACGFRALGSAQSPGPATAAGAPG 123
Query: 84 STRPSKPGPV--SWKS----------LAITFAIGGALLAGMKHVKKEKAEKLEK 125
+R PGPV W++ A T + G + G KH++ ++ +LE+
Sbjct: 124 FSRALSPGPVPPGWRAAPRAGAPHQRAAATGSGGSRSVGGGKHLRIAQSLRLEE 177
>gi|50428940 mediator complex subunit 25 [Homo sapiens]
Length = 747
Score = 32.7 bits (73), Expect = 0.40
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 6/40 (15%)
Query: 54 ASGRPGYCLGTRPLSTARPPPPWSQKGPGDSTRPSKPGPV 93
A+G+P +P TA+PPP Q PG ++ P PGP+
Sbjct: 601 ATGQP------QPQGTAQPPPGAPQGPPGAASGPPPPGPI 634
>gi|40556370 PHD finger protein 15 [Homo sapiens]
Length = 790
Score = 32.3 bits (72), Expect = 0.53
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 64 TRPLSTARPPPPWSQKGPGDSTRPSKPGPVSW 95
TR + +PPPP Q GPG T P K +W
Sbjct: 598 TRLPAKKKPPPPPPQDGPGSRTTPDKAPKKTW 629
>gi|239744252 PREDICTED: hypothetical protein XP_002343084 [Homo
sapiens]
Length = 149
Score = 32.0 bits (71), Expect = 0.69
Identities = 26/94 (27%), Positives = 35/94 (37%), Gaps = 21/94 (22%)
Query: 13 RPLGGQLWRFLPR----GLEFWGPAEGTARVLLRQFCARQAEA----------------- 51
RPL G+ W L++ G +E A R C +AEA
Sbjct: 12 RPLAGRSWTCRSGRKAGALDWGGRSEARASWAWRVRCEAEAEAGPVQAFERQEAGPAKAD 71
Query: 52 WRASGRPGYCLGTRPLSTARPPPPWSQKGPGDST 85
WR+S P T+ RPP S GP ++T
Sbjct: 72 WRSSSAPEEAAKTQKRGLGRPPRAMSWAGPKEAT 105
>gi|58331144 proline rich region 18 [Homo sapiens]
Length = 295
Score = 32.0 bits (71), Expect = 0.69
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 32 PAEGTARVLLRQFCARQAEAWRASGRP-GYCLGTRPLSTARPPPPWSQKGPG-DSTRPSK 89
P AR L R+ CA + R RP G + P +T + PP +++GPG D T+P
Sbjct: 14 PGAQAARQLPRRPCAAGDKKKRPPQRPEGLLSSSWPSATLKRPP--ARRGPGLDRTQPPA 71
Query: 90 PGPVSWKSL 98
P VS ++L
Sbjct: 72 PPGVSPQAL 80
>gi|169171680 PREDICTED: hypothetical protein [Homo sapiens]
Length = 226
Score = 31.6 bits (70), Expect = 0.90
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 58 PGYCLGTRPLSTARPPPPWSQKGPGDSTRPSKPGPVS 94
P +CLG RP+ P P P + T P GPV+
Sbjct: 119 PQFCLGPRPIPQISPGTPHPAAHPPERTAPHLRGPVA 155
>gi|224028259 nuclear factor erythroid 2-like 2 isoform 3 [Homo
sapiens]
Length = 582
Score = 30.8 bits (68), Expect = 1.5
Identities = 37/147 (25%), Positives = 63/147 (42%), Gaps = 32/147 (21%)
Query: 113 KHVKKEKAEKLEKERQRHIGKPLLGGPFS---LTTHTGE-------RKTDKDYLGQWLLI 162
K + EK +KLEKERQ + K F+ L TGE + + G
Sbjct: 28 KEYELEKQKKLEKERQEQLQKEQEKAFFAQLQLDEETGEFLPIQPAQHIQSETSGS--AN 85
Query: 163 YFGFTHCP-------DVCPEELEKMIQVVDEIDSITTLPDL-----TPLFISIDPERDTK 210
Y H P D C + L + VD+ +S+ +PD+ +P+FI+ + + +
Sbjct: 86 YSQVAHIPKSDALYFDDCMQLLAQTFPFVDDNESL--VPDIPGHIESPVFIATNQAQSPE 143
Query: 211 EAIANYVKEFSPKLVGLTGTREEVDQV 237
++A V L G +++++QV
Sbjct: 144 TSVAQVAP------VDLDGMQQDIEQV 164
>gi|239745658 PREDICTED: hypothetical protein XP_002344164 [Homo
sapiens]
Length = 149
Score = 30.8 bits (68), Expect = 1.5
Identities = 25/94 (26%), Positives = 35/94 (37%), Gaps = 21/94 (22%)
Query: 13 RPLGGQLWRFL----PRGLEFWGPAEGTARVLLRQFCARQAEA----------------- 51
RPL G+ W P L++ +E A R C +AEA
Sbjct: 12 RPLAGRSWTCRSGRKPGALDWGDRSEARASWAWRVRCEAEAEAGPVQAFERQEAGPAKAA 71
Query: 52 WRASGRPGYCLGTRPLSTARPPPPWSQKGPGDST 85
WR+S P ++ RPP S GP ++T
Sbjct: 72 WRSSSAPEEAAKSQKRGLGRPPRAMSWAGPKEAT 105
>gi|239742765 PREDICTED: hypothetical protein XP_002342631 [Homo
sapiens]
Length = 149
Score = 30.8 bits (68), Expect = 1.5
Identities = 25/94 (26%), Positives = 35/94 (37%), Gaps = 21/94 (22%)
Query: 13 RPLGGQLWRFLPR----GLEFWGPAEGTARVLLRQFCARQAEA----------------- 51
RPL G+ W L++ G +E A R C +AEA
Sbjct: 12 RPLAGRSWTCRSGRKAGALDWGGRSEARASWAWRVCCEAEAEAGPVQAFERQEAGPAKAD 71
Query: 52 WRASGRPGYCLGTRPLSTARPPPPWSQKGPGDST 85
WR+S P ++ RPP S GP ++T
Sbjct: 72 WRSSSAPEEAAKSQKRGLGRPPRAMSWAGPKEAT 105
>gi|239740976 PREDICTED: hypothetical protein XP_002344291 [Homo
sapiens]
Length = 149
Score = 30.8 bits (68), Expect = 1.5
Identities = 25/94 (26%), Positives = 35/94 (37%), Gaps = 21/94 (22%)
Query: 13 RPLGGQLWRFLPR----GLEFWGPAEGTARVLLRQFCARQAEA----------------- 51
RPL G+ W L++ G +E A R C +AEA
Sbjct: 12 RPLAGRSWTCRSGRKAGALDWGGRSEARASWAWRVCCEAEAEAGPVQAFERQEAGPAKAD 71
Query: 52 WRASGRPGYCLGTRPLSTARPPPPWSQKGPGDST 85
WR+S P ++ RPP S GP ++T
Sbjct: 72 WRSSSAPEEAAKSQKRGLGRPPRAMSWAGPKEAT 105
>gi|170016069 zinc finger, CCHC domain containing 2 [Homo sapiens]
Length = 1178
Score = 30.8 bits (68), Expect = 1.5
Identities = 23/65 (35%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Query: 48 QAEAWRASGRPGYCLGTRPLSTARPPPPWSQKGPGDSTRPSKPGPVSWKSLAITFAIGGA 107
+AE A RPG +R RPPPP P +R P P + L A G A
Sbjct: 19 EAEEPEADARPGAKAPSRRRRDCRPPPP--PPPPAGPSRGPLPPPPPPRGLGPPVAGGAA 76
Query: 108 LLAGM 112
AGM
Sbjct: 77 AGAGM 81
>gi|17388799 DnaJ (Hsp40) homolog, subfamily B, member 6 isoform a
[Homo sapiens]
Length = 326
Score = 30.8 bits (68), Expect = 1.5
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 10/65 (15%)
Query: 65 RPLSTARPPPPWSQKGPGDSTRPSKPGPVSWKSLAITFAIGGALLAGMKHVKKEKAEKLE 124
RP S R P + G+ RP PGP W LA AG+K K K +K
Sbjct: 264 RPASLLRHAPHCLSEEEGEQDRPRAPGP--WDPLASA--------AGLKEGGKRKKQKQR 313
Query: 125 KERQR 129
+E ++
Sbjct: 314 EESKK 318
>gi|116642889 cyclic nucleotide gated channel beta 3 [Homo sapiens]
Length = 809
Score = 30.8 bits (68), Expect = 1.5
Identities = 29/96 (30%), Positives = 40/96 (41%), Gaps = 15/96 (15%)
Query: 182 QVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVDQVARAY 241
+++DE D + TLP L ++ID N+ L T+ D + R
Sbjct: 491 RMLDESDLLKTLPTTVQLALAID---------VNFSIISKVDLFKGCDTQMIYDMLLRLK 541
Query: 242 RVYYSPG----PKDE--DEDYIVDHTIIMYLIGPDG 271
V Y PG K E E YI+ H + L GPDG
Sbjct: 542 SVLYLPGDFVCKKGEIGKEMYIIKHGEVQVLGGPDG 577
>gi|169209217 PREDICTED: similar to hCG2042704 [Homo sapiens]
Length = 511
Score = 30.4 bits (67), Expect = 2.0
Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 46 ARQAEAWRASGRPG-YCLGTRPLSTARPPPPWSQKGPGDSTRPSKPGPVSWKSLA 99
AR A A R G P +C P+S R P + P + PS P PV S A
Sbjct: 27 ARPARAVRRGGHPAHFCWSRPPVSRERDDPSAPRPVPALPSSPSPPPPVRRPSAA 81
>gi|239745068 PREDICTED: similar to hCG2042704 [Homo sapiens]
Length = 618
Score = 30.4 bits (67), Expect = 2.0
Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 46 ARQAEAWRASGRPG-YCLGTRPLSTARPPPPWSQKGPGDSTRPSKPGPVSWKSLA 99
AR A A R G P +C P+S R P + P + PS P PV S A
Sbjct: 27 ARPARAARRGGHPAHFCWSRPPVSRERDDPSAPRPVPALPSSPSPPPPVRRPSAA 81
>gi|239508694 PREDICTED: hypothetical protein [Homo sapiens]
Length = 149
Score = 30.4 bits (67), Expect = 2.0
Identities = 25/94 (26%), Positives = 35/94 (37%), Gaps = 21/94 (22%)
Query: 13 RPLGGQLWRFLPR----GLEFWGPAEGTARVLLRQFCARQAEA----------------- 51
RPL G+ W L++ G +E A R C +AEA
Sbjct: 12 RPLAGRSWTCRSGRKAGALDWGGRSEARASWAWRVRCEAEAEAGPVQAFETQEAGPAKAD 71
Query: 52 WRASGRPGYCLGTRPLSTARPPPPWSQKGPGDST 85
WR+S P ++ RPP S GP ++T
Sbjct: 72 WRSSSAPEEAAKSQKRGLGRPPRAMSWAGPKEAT 105
>gi|46275820 tetratricopeptide repeat domain 9B [Homo sapiens]
Length = 239
Score = 30.4 bits (67), Expect = 2.0
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 4/85 (4%)
Query: 53 RASGRPGYCLGTRPLSTARPPP----PWSQKGPGDSTRPSKPGPVSWKSLAITFAIGGAL 108
R + P L P RPPP P S G G ++PGP S ++ A+ +L
Sbjct: 3 RGALSPVLMLSAAPEPPPRPPPALSPPGSGPGSGSRHGSARPGPTPEPSGSLGAALDSSL 62
Query: 109 LAGMKHVKKEKAEKLEKERQRHIGK 133
A + + + EK+ + IGK
Sbjct: 63 RAAVAFKAEGQRCYREKKFREAIGK 87
>gi|169211520 PREDICTED: hypothetical protein [Homo sapiens]
Length = 312
Score = 30.0 bits (66), Expect = 2.6
Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 31 GPAEGTARVLLRQFCARQAEAWRASGRPGYCLGTRPLSTARPPPPWSQKGPGDSTRPSKP 90
GPA G R + + AR A A+GR G C T R P + P + P +
Sbjct: 102 GPAPGRCRPIAARLAARPAPG-TAAGRGGCCEALPAEGTCRRLVPLHPRSPAGESGPGRG 160
Query: 91 G 91
G
Sbjct: 161 G 161
>gi|7662310 FERM, RhoGEF and pleckstrin domain protein 2 [Homo
sapiens]
Length = 1054
Score = 30.0 bits (66), Expect = 2.6
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 54 ASGRPGYCLGTRPLSTARP-PPPWSQKGPGDSTRPSKPGPVSWKS 97
A R G G +A+P PP Q GPG ST+ +P P S KS
Sbjct: 442 AERRSGAVAGGPDTPSAQPLGPPALQPGPGLSTKSPQPSPSSRKS 486
>gi|5453802 neural retina leucine zipper [Homo sapiens]
Length = 237
Score = 29.6 bits (65), Expect = 3.4
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 54 ASGRPG---YCLGTRPLSTARPPPPWSQKGPGDSTRPSKPG 91
+ GRPG LG+ P S+ P P +S+ G +T ++PG
Sbjct: 28 SEGRPGPPTASLGSTPYSSVPPSPTFSEPGMVGATEGTRPG 68
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.139 0.436
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,301,806
Number of Sequences: 37866
Number of extensions: 772110
Number of successful extensions: 3511
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 71
Number of HSP's that attempted gapping in prelim test: 3424
Number of HSP's gapped (non-prelim): 150
length of query: 301
length of database: 18,247,518
effective HSP length: 102
effective length of query: 199
effective length of database: 14,385,186
effective search space: 2862652014
effective search space used: 2862652014
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.