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Search of human proteins with 4758150
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4758150 DNA fragmentation factor, 40 kD, beta polypeptide
[Homo sapiens]
(338 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4758150 DNA fragmentation factor, 40 kD, beta polypeptide [Ho... 693 0.0
gi|23943904 cell death-inducing DFFA-like effector c [Homo sapiens] 37 0.025
gi|38158011 cell death-inducing DFFA-like effector a isoform 2 [... 37 0.033
gi|4557465 cell death-inducing DFFA-like effector a isoform 1 [H... 37 0.033
gi|47132600 DNA fragmentation factor, 45kDa, alpha polypeptide i... 33 0.47
gi|4758148 DNA fragmentation factor, 45kDa, alpha polypeptide is... 33 0.47
gi|93102358 cell death-inducing DFFA-like effector b [Homo sapiens] 32 0.81
gi|239754825 PREDICTED: hypothetical protein [Homo sapiens] 30 4.0
gi|239755736 PREDICTED: hypothetical protein [Homo sapiens] 29 6.8
gi|239750248 PREDICTED: hypothetical protein XP_002347331 [Homo ... 29 6.8
gi|239744550 PREDICTED: hypothetical protein XP_002343193 [Homo ... 29 6.8
gi|254028240 MAP/microtubule affinity-regulating kinase 2 isofor... 28 8.9
gi|254028237 MAP/microtubule affinity-regulating kinase 2 isofor... 28 8.9
gi|254028232 MAP/microtubule affinity-regulating kinase 2 isofor... 28 8.9
gi|223278379 ribosomal RNA processing 12 homolog isoform 1 [Homo... 28 8.9
gi|67190748 complement component 4A preproprotein [Homo sapiens] 28 8.9
gi|178557739 complement component 4B preproprotein [Homo sapiens] 28 8.9
gi|195927037 DNA (cytosine-5-)-methyltransferase 1 isoform a [Ho... 28 8.9
gi|4503351 DNA (cytosine-5-)-methyltransferase 1 isoform b [Homo... 28 8.9
gi|239758130 PREDICTED: similar to complement component 4B (Chil... 28 8.9
gi|239740686 PREDICTED: similar to C4A protein isoform 2 [Homo s... 28 8.9
gi|239740684 PREDICTED: similar to C4A protein isoform 1 [Homo s... 28 8.9
>gi|4758150 DNA fragmentation factor, 40 kD, beta polypeptide [Homo
sapiens]
Length = 338
Score = 693 bits (1789), Expect = 0.0
Identities = 338/338 (100%), Positives = 338/338 (100%)
Query: 1 MLQKPKSVKLRALRSPRKFGVAGRSCQEVLRKGCLRFQLPERGSRLCLYEDGTELTEDYF 60
MLQKPKSVKLRALRSPRKFGVAGRSCQEVLRKGCLRFQLPERGSRLCLYEDGTELTEDYF
Sbjct: 1 MLQKPKSVKLRALRSPRKFGVAGRSCQEVLRKGCLRFQLPERGSRLCLYEDGTELTEDYF 60
Query: 61 PSVPDNAELVLLTLGQAWQGYVSDIRRFLSAFHEPQVGLIQAAQQLLCDEQAPQRQRLLA 120
PSVPDNAELVLLTLGQAWQGYVSDIRRFLSAFHEPQVGLIQAAQQLLCDEQAPQRQRLLA
Sbjct: 61 PSVPDNAELVLLTLGQAWQGYVSDIRRFLSAFHEPQVGLIQAAQQLLCDEQAPQRQRLLA 120
Query: 121 DLLHNVSQNIAAETRAEDPPWFEGLESRFQSKSGYLRYSCESRIRSYLREVSSYPSTVGA 180
DLLHNVSQNIAAETRAEDPPWFEGLESRFQSKSGYLRYSCESRIRSYLREVSSYPSTVGA
Sbjct: 121 DLLHNVSQNIAAETRAEDPPWFEGLESRFQSKSGYLRYSCESRIRSYLREVSSYPSTVGA 180
Query: 181 EAQEEFLRVLGSMCQRLRSMQYNGSYFDRGAKGGSRLCTPEGWFSCQGPFDMDSCLSRHS 240
EAQEEFLRVLGSMCQRLRSMQYNGSYFDRGAKGGSRLCTPEGWFSCQGPFDMDSCLSRHS
Sbjct: 181 EAQEEFLRVLGSMCQRLRSMQYNGSYFDRGAKGGSRLCTPEGWFSCQGPFDMDSCLSRHS 240
Query: 241 INPYSNRESRILFSTWNLDHIIEKKRTIIPTLVEAIKEQDGREVDWEYFYGLLFTSENLK 300
INPYSNRESRILFSTWNLDHIIEKKRTIIPTLVEAIKEQDGREVDWEYFYGLLFTSENLK
Sbjct: 241 INPYSNRESRILFSTWNLDHIIEKKRTIIPTLVEAIKEQDGREVDWEYFYGLLFTSENLK 300
Query: 301 LVHIVCHKKTTHKLNCDPSRIYKPQTRLKRKQPVRKRQ 338
LVHIVCHKKTTHKLNCDPSRIYKPQTRLKRKQPVRKRQ
Sbjct: 301 LVHIVCHKKTTHKLNCDPSRIYKPQTRLKRKQPVRKRQ 338
>gi|23943904 cell death-inducing DFFA-like effector c [Homo sapiens]
Length = 238
Score = 37.0 bits (84), Expect = 0.025
Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Query: 14 RSPRKFGVAGRSCQEVLRKGCLRFQLPERGSRLCLYEDGTEL-TEDYFPSVPDNAELVLL 72
RS RK G+ S +++L K L ++ L L EDGT + TE+YF ++ + ++L
Sbjct: 52 RSVRK-GIMAYSLEDLLLKVRDTLMLADKPFFLVLEEDGTTVETEEYFQALAGDTVFMVL 110
Query: 73 TLGQAWQ-GYVSDIRRFLSAFHEP 95
GQ WQ R LS H+P
Sbjct: 111 QKGQKWQPPSEQGTRHPLSLSHKP 134
>gi|38158011 cell death-inducing DFFA-like effector a isoform 2
[Homo sapiens]
Length = 253
Score = 36.6 bits (83), Expect = 0.033
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 14 RSPRKFGVAGRSCQEVLRKGCLRFQLPERGSRLCLYEDGTEL-TEDYFPSVPDNAELVLL 72
RS R+ GV S QE++ K + L L EDGT + TE++F ++ DN ++L
Sbjct: 78 RSSRR-GVMASSLQELISKTLDALVIATGLVTLVLEEDGTVVDTEEFFQTLGDNTHFMIL 136
Query: 73 TLGQAW 78
GQ W
Sbjct: 137 EKGQKW 142
>gi|4557465 cell death-inducing DFFA-like effector a isoform 1 [Homo
sapiens]
Length = 219
Score = 36.6 bits (83), Expect = 0.033
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 14 RSPRKFGVAGRSCQEVLRKGCLRFQLPERGSRLCLYEDGTEL-TEDYFPSVPDNAELVLL 72
RS R+ GV S QE++ K + L L EDGT + TE++F ++ DN ++L
Sbjct: 44 RSSRR-GVMASSLQELISKTLDALVIATGLVTLVLEEDGTVVDTEEFFQTLGDNTHFMIL 102
Query: 73 TLGQAW 78
GQ W
Sbjct: 103 EKGQKW 108
>gi|47132600 DNA fragmentation factor, 45kDa, alpha polypeptide
isoform 2 [Homo sapiens]
Length = 268
Score = 32.7 bits (73), Expect = 0.47
Identities = 26/82 (31%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
Query: 6 KSVKLRALRSPRKFGVAGRSCQEVLRKGC--LRFQLPERGSRLCLYEDGTELTED-YFPS 62
K LR S + GVA +++ K C L L L EDGT + +D YF
Sbjct: 19 KPCLLRRNYSREQHGVAASCLEDLRSKACDILAIDKSLTPVTLVLAEDGTIVDDDDYFLC 78
Query: 63 VPDNAELVLLTLGQAWQGYVSD 84
+P N + V L + W SD
Sbjct: 79 LPSNTKFVALASNEKWAYNNSD 100
>gi|4758148 DNA fragmentation factor, 45kDa, alpha polypeptide
isoform 1 [Homo sapiens]
Length = 331
Score = 32.7 bits (73), Expect = 0.47
Identities = 26/82 (31%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
Query: 6 KSVKLRALRSPRKFGVAGRSCQEVLRKGC--LRFQLPERGSRLCLYEDGTELTED-YFPS 62
K LR S + GVA +++ K C L L L EDGT + +D YF
Sbjct: 19 KPCLLRRNYSREQHGVAASCLEDLRSKACDILAIDKSLTPVTLVLAEDGTIVDDDDYFLC 78
Query: 63 VPDNAELVLLTLGQAWQGYVSD 84
+P N + V L + W SD
Sbjct: 79 LPSNTKFVALASNEKWAYNNSD 100
>gi|93102358 cell death-inducing DFFA-like effector b [Homo sapiens]
Length = 219
Score = 32.0 bits (71), Expect = 0.81
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 14 RSPRKFGVAGRSCQEVLRKGCLRFQLPERGSRLCLYEDGTEL-TEDYFPSVPDNAELVLL 72
R+ RK G+ + QE+L K L L L L EDGT + +ED+F + D+ L++L
Sbjct: 45 RTIRK-GLTAATRQELLAKA-LETLLLNGVLTLVLEEDGTAVDSEDFFQLLEDDTCLMVL 102
Query: 73 TLGQAW 78
GQ+W
Sbjct: 103 QSGQSW 108
>gi|239754825 PREDICTED: hypothetical protein [Homo sapiens]
Length = 135
Score = 29.6 bits (65), Expect = 4.0
Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
Query: 51 DGTELTEDYFPSVPDNAELVLLTLGQAWQGYVSDIR 86
DG L + S+P +L+L + G+AW+G VSDIR
Sbjct: 20 DGISLPRSFNESLP---QLLLGSGGEAWKGPVSDIR 52
>gi|239755736 PREDICTED: hypothetical protein [Homo sapiens]
Length = 136
Score = 28.9 bits (63), Expect = 6.8
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Query: 51 DGTELTEDYFPSVPDNAELVLLTLGQAWQGYVSDIRR 87
DG L + S+P +L+L + G+ W+G VSDIR+
Sbjct: 20 DGISLPRSFSESLP---QLLLGSGGEPWKGPVSDIRK 53
>gi|239750248 PREDICTED: hypothetical protein XP_002347331 [Homo
sapiens]
Length = 136
Score = 28.9 bits (63), Expect = 6.8
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Query: 51 DGTELTEDYFPSVPDNAELVLLTLGQAWQGYVSDIRR 87
DG L + S+P +L+L + G+ W+G VSDIR+
Sbjct: 20 DGISLPRSFSESLP---QLLLGSGGEPWKGPVSDIRK 53
>gi|239744550 PREDICTED: hypothetical protein XP_002343193 [Homo
sapiens]
Length = 136
Score = 28.9 bits (63), Expect = 6.8
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Query: 51 DGTELTEDYFPSVPDNAELVLLTLGQAWQGYVSDIRR 87
DG L + S+P +L+L + G+ W+G VSDIR+
Sbjct: 20 DGISLPRSFSESLP---QLLLGSGGEPWKGPVSDIRK 53
>gi|254028240 MAP/microtubule affinity-regulating kinase 2 isoform f
[Homo sapiens]
Length = 709
Score = 28.5 bits (62), Expect = 8.9
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 96 QVGLIQAAQQLLCDEQAPQRQRLLADLLHNVSQNIAAETRAEDPPWFEGLESRFQSKSGY 155
+ L QA+ Q D APQR + + HN+S + A R P G+ SR +G
Sbjct: 490 RASLGQASIQNGKDSTAPQRVPVASPSAHNISSSGGAPDRTNFP---RGVSSRSTFHAGQ 546
Query: 156 LR 157
LR
Sbjct: 547 LR 548
>gi|254028237 MAP/microtubule affinity-regulating kinase 2 isoform e
[Homo sapiens]
Length = 719
Score = 28.5 bits (62), Expect = 8.9
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 96 QVGLIQAAQQLLCDEQAPQRQRLLADLLHNVSQNIAAETRAEDPPWFEGLESRFQSKSGY 155
+ L QA+ Q D APQR + + HN+S + A R P G+ SR +G
Sbjct: 491 RASLGQASIQNGKDSTAPQRVPVASPSAHNISSSGGAPDRTNFP---RGVSSRSTFHAGQ 547
Query: 156 LR 157
LR
Sbjct: 548 LR 549
>gi|254028232 MAP/microtubule affinity-regulating kinase 2 isoform c
[Homo sapiens]
Length = 724
Score = 28.5 bits (62), Expect = 8.9
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 96 QVGLIQAAQQLLCDEQAPQRQRLLADLLHNVSQNIAAETRAEDPPWFEGLESRFQSKSGY 155
+ L QA+ Q D APQR + + HN+S + A R P G+ SR +G
Sbjct: 490 RASLGQASIQNGKDSTAPQRVPVASPSAHNISSSGGAPDRTNFP---RGVSSRSTFHAGQ 546
Query: 156 LR 157
LR
Sbjct: 547 LR 548
>gi|223278379 ribosomal RNA processing 12 homolog isoform 1 [Homo
sapiens]
Length = 1297
Score = 28.5 bits (62), Expect = 8.9
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 268 IIPTLVEAIKEQDGREVDWEYFYGLLFTSE 297
++ + E I+ Q G+E + EYF L+ T E
Sbjct: 127 VLAAVTEVIRSQGGKETETEYFAALMTTME 156
>gi|67190748 complement component 4A preproprotein [Homo sapiens]
Length = 1744
Score = 28.5 bits (62), Expect = 8.9
Identities = 32/114 (28%), Positives = 43/114 (37%), Gaps = 32/114 (28%)
Query: 59 YFPSVPDNAELVLLTLGQAWQGYVSDIRRFLSAFHEPQVGLIQAAQQLLCDEQ------- 111
YF SVP + E V G+ A E VGL+Q A L D
Sbjct: 1525 YFDSVPTSRECV---------GF--------EAVQEVPVGLVQPASATLYDYYNPERRCS 1567
Query: 112 ----APQRQRLLADLLHNVSQNIAAETRAEDPPWFEGLESRFQSKSGY-LRYSC 160
AP + RLLA L S + + P LE Q + GY ++++C
Sbjct: 1568 VFYGAPSKSRLLATL---CSAEVCQCAEGKCPRQRRALERGLQDEDGYRMKFAC 1618
>gi|178557739 complement component 4B preproprotein [Homo sapiens]
Length = 1744
Score = 28.5 bits (62), Expect = 8.9
Identities = 32/114 (28%), Positives = 43/114 (37%), Gaps = 32/114 (28%)
Query: 59 YFPSVPDNAELVLLTLGQAWQGYVSDIRRFLSAFHEPQVGLIQAAQQLLCDEQ------- 111
YF SVP + E V G+ A E VGL+Q A L D
Sbjct: 1525 YFDSVPTSRECV---------GF--------EAVQEVPVGLVQPASATLYDYYNPERRCS 1567
Query: 112 ----APQRQRLLADLLHNVSQNIAAETRAEDPPWFEGLESRFQSKSGY-LRYSC 160
AP + RLLA L S + + P LE Q + GY ++++C
Sbjct: 1568 VFYGAPSKSRLLATL---CSAEVCQCAEGKCPRQRRALERGLQDEDGYRMKFAC 1618
>gi|195927037 DNA (cytosine-5-)-methyltransferase 1 isoform a [Homo
sapiens]
Length = 1632
Score = 28.5 bits (62), Expect = 8.9
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 8/62 (12%)
Query: 3 QKPKSVKLRALRSPRKFGVAGRSCQEVLRKGCLRFQLPERGSRLCLYEDGTELTEDYFPS 62
Q+P+ K +A + KFG +GRS Q + C + E D E +D P
Sbjct: 676 QQPECGKCKACKDMVKFGGSGRSKQACQERRCPNMAMKE--------ADDDEEVDDNIPE 727
Query: 63 VP 64
+P
Sbjct: 728 MP 729
>gi|4503351 DNA (cytosine-5-)-methyltransferase 1 isoform b [Homo
sapiens]
Length = 1616
Score = 28.5 bits (62), Expect = 8.9
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 8/62 (12%)
Query: 3 QKPKSVKLRALRSPRKFGVAGRSCQEVLRKGCLRFQLPERGSRLCLYEDGTELTEDYFPS 62
Q+P+ K +A + KFG +GRS Q + C + E D E +D P
Sbjct: 660 QQPECGKCKACKDMVKFGGSGRSKQACQERRCPNMAMKE--------ADDDEEVDDNIPE 711
Query: 63 VP 64
+P
Sbjct: 712 MP 713
>gi|239758130 PREDICTED: similar to complement component 4B (Childo
blood group), partial [Homo sapiens]
Length = 666
Score = 28.5 bits (62), Expect = 8.9
Identities = 32/114 (28%), Positives = 43/114 (37%), Gaps = 32/114 (28%)
Query: 59 YFPSVPDNAELVLLTLGQAWQGYVSDIRRFLSAFHEPQVGLIQAAQQLLCDEQ------- 111
YF SVP + E V G+ A E VGL+Q A L D
Sbjct: 447 YFDSVPTSRECV---------GF--------EAVQEVPVGLVQPASATLYDYYNPERRCS 489
Query: 112 ----APQRQRLLADLLHNVSQNIAAETRAEDPPWFEGLESRFQSKSGY-LRYSC 160
AP + RLLA L S + + P LE Q + GY ++++C
Sbjct: 490 VFYGAPSKSRLLATL---CSAEVCQCAEGKCPRQRRALERGLQDEDGYRMKFAC 540
>gi|239740686 PREDICTED: similar to C4A protein isoform 2 [Homo
sapiens]
Length = 1698
Score = 28.5 bits (62), Expect = 8.9
Identities = 32/114 (28%), Positives = 43/114 (37%), Gaps = 32/114 (28%)
Query: 59 YFPSVPDNAELVLLTLGQAWQGYVSDIRRFLSAFHEPQVGLIQAAQQLLCDEQ------- 111
YF SVP + E V G+ A E VGL+Q A L D
Sbjct: 1479 YFDSVPTSRECV---------GF--------EAVQEVPVGLVQPASATLYDYYNPERRCS 1521
Query: 112 ----APQRQRLLADLLHNVSQNIAAETRAEDPPWFEGLESRFQSKSGY-LRYSC 160
AP + RLLA L S + + P LE Q + GY ++++C
Sbjct: 1522 VFYGAPSKSRLLATL---CSAEVCQCAEGKCPRQRRALERGLQDEDGYRMKFAC 1572
>gi|239740684 PREDICTED: similar to C4A protein isoform 1 [Homo
sapiens]
Length = 1744
Score = 28.5 bits (62), Expect = 8.9
Identities = 32/114 (28%), Positives = 43/114 (37%), Gaps = 32/114 (28%)
Query: 59 YFPSVPDNAELVLLTLGQAWQGYVSDIRRFLSAFHEPQVGLIQAAQQLLCDEQ------- 111
YF SVP + E V G+ A E VGL+Q A L D
Sbjct: 1525 YFDSVPTSRECV---------GF--------EAVQEVPVGLVQPASATLYDYYNPERRCS 1567
Query: 112 ----APQRQRLLADLLHNVSQNIAAETRAEDPPWFEGLESRFQSKSGY-LRYSC 160
AP + RLLA L S + + P LE Q + GY ++++C
Sbjct: 1568 VFYGAPSKSRLLATL---CSAEVCQCAEGKCPRQRRALERGLQDEDGYRMKFAC 1618
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.136 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,544,786
Number of Sequences: 37866
Number of extensions: 602596
Number of successful extensions: 1325
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 1323
Number of HSP's gapped (non-prelim): 22
length of query: 338
length of database: 18,247,518
effective HSP length: 103
effective length of query: 235
effective length of database: 14,347,320
effective search space: 3371620200
effective search space used: 3371620200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.