Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100293970 Sequence: fasta or formatted (136aa) NCBI GI: 239755736
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.4         10           1
 C cysteine            1.5          2           1
 D aspartate           2.9          4           1
 E glutamate           7.4         10           1
 F phenylalanine       3.7          5           1
 G glycine             9.6         13           2
 H histidine           2.2          3           1
 I isoleucine          2.9          4           1
 K lysine              2.9          4           1
 L leucine            10.3         14           3
 M methionine          1.5          2           1
 N asparagine          3.7          5           1
 P proline             8.8         12           1
 Q glutamine           3.7          5           1
 R arginine            5.9          8           1
 S serine             11.0         15           1
 T threonine           3.7          5           2
 V valine              5.9          8           1
 W tryptophan          2.9          4           1
 Y tyrosine            2.2          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100289701          0.992   PREDICTED: hypothetical protein XP_002347331 
LOC100287458          0.992   PREDICTED: hypothetical protein XP_002343193 
LOC100292800          0.892   PREDICTED: hypothetical protein 
LOC100289814          0.653   PREDICTED: hypothetical protein XP_002348290 
LOC729462             0.591   PREDICTED: hypothetical protein 
LOC729346             0.591   PREDICTED: hypothetical protein 
LOC645489             0.583   PREDICTED: hypothetical protein 
LOC729459             0.583   PREDICTED: hypothetical protein 
LOC729456             0.583   PREDICTED: hypothetical protein 
LOC100132221          0.583   PREDICTED: hypothetical protein 
LOC729394             0.583   PREDICTED: hypothetical protein 
LOC729387             0.583   PREDICTED: hypothetical protein 
LOC729383             0.583   PREDICTED: hypothetical protein 
LOC729379             0.583   PREDICTED: hypothetical protein 
LOC100132048          0.583   PREDICTED: hypothetical protein 
LOC100132485          0.583   PREDICTED: hypothetical protein 
LOC729339             0.583   PREDICTED: hypothetical protein 
LOC645489             0.583   PREDICTED: hypothetical protein 
LOC729284             0.575   PREDICTED: hypothetical protein 
LOC729278             0.575   PREDICTED: hypothetical protein 
LOC729270             0.575   PREDICTED: hypothetical protein 
LOC100133099          0.575   PREDICTED: hypothetical protein 
LOC729372             0.568   PREDICTED: hypothetical protein 
LOC100132106          0.568   PREDICTED: hypothetical protein 
LOC100132648          0.568   PREDICTED: hypothetical protein 
LOC729273             0.568   PREDICTED: hypothetical protein 
LOC729261             0.568   PREDICTED: hypothetical protein 
LOC100289516          0.521   PREDICTED: hypothetical protein XP_002342874 
LOC100287352          0.510   PREDICTED: hypothetical protein XP_002342861 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press