Guide to the Human Genome
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Name: LOC100292800 Sequence: fasta or formatted (135aa) NCBI GI: 239754825
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.1         11           1
 C cysteine            1.5          2           1
 D aspartate           3.0          4           1
 E glutamate           7.4         10           1
 F phenylalanine       3.7          5           1
 G glycine             8.1         11           2
 H histidine           2.2          3           1
 I isoleucine          3.0          4           1
 K lysine              2.2          3           1
 L leucine             8.9         12           3
 M methionine          1.5          2           1
 N asparagine          5.2          7           1
 P proline             8.1         11           1
 Q glutamine           2.2          3           1
 R arginine            7.4         10           1
 S serine             10.4         14           1
 T threonine           3.7          5           2
 V valine              8.1         11           1
 W tryptophan          3.0          4           1
 Y tyrosine            2.2          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100289701          0.914   PREDICTED: hypothetical protein XP_002347331 
LOC100287458          0.914   PREDICTED: hypothetical protein XP_002343193 
LOC100293970          0.902   PREDICTED: hypothetical protein 
LOC100289814          0.598   PREDICTED: hypothetical protein XP_002348290 
LOC645489             0.555   PREDICTED: hypothetical protein 
LOC729459             0.555   PREDICTED: hypothetical protein 
LOC729456             0.555   PREDICTED: hypothetical protein 
LOC100132221          0.555   PREDICTED: hypothetical protein 
LOC729394             0.555   PREDICTED: hypothetical protein 
LOC729387             0.555   PREDICTED: hypothetical protein 
LOC729383             0.555   PREDICTED: hypothetical protein 
LOC729379             0.555   PREDICTED: hypothetical protein 
LOC100132048          0.555   PREDICTED: hypothetical protein 
LOC100132485          0.555   PREDICTED: hypothetical protein 
LOC729339             0.555   PREDICTED: hypothetical protein 
LOC645489             0.555   PREDICTED: hypothetical protein 
LOC729284             0.551   PREDICTED: hypothetical protein 
LOC729278             0.551   PREDICTED: hypothetical protein 
LOC729270             0.551   PREDICTED: hypothetical protein 
LOC100133099          0.547   PREDICTED: hypothetical protein 
LOC729462             0.543   PREDICTED: hypothetical protein 
LOC729346             0.543   PREDICTED: hypothetical protein 
LOC100132106          0.539   PREDICTED: hypothetical protein 
LOC100132648          0.539   PREDICTED: hypothetical protein 
LOC729372             0.539   PREDICTED: hypothetical protein 
LOC729273             0.539   PREDICTED: hypothetical protein 
LOC729261             0.539   PREDICTED: hypothetical protein 
LOC100289516          0.516   PREDICTED: hypothetical protein XP_002342874 
LOC100287352          0.516   PREDICTED: hypothetical protein XP_002342861 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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