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Search of human proteins with 4757946
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4757946 CD83 antigen isoform a [Homo sapiens]
(205 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4757946 CD83 antigen isoform a [Homo sapiens] 423 e-119
gi|94421024 CD83 antigen isoform b [Homo sapiens] 417 e-117
gi|53829379 plasminogen activator, urokinase receptor isoform 2 ... 34 0.076
gi|4505865 plasminogen activator, urokinase receptor isoform 1 p... 34 0.076
gi|20127422 Down syndrome cell adhesion molecule isoform CHD2-42... 34 0.076
gi|75709184 contactin 3 [Homo sapiens] 34 0.099
gi|4503173 coxsackie virus and adenovirus receptor precursor [Ho... 33 0.13
gi|18426911 signal-regulatory protein alpha precursor [Homo sapi... 32 0.29
gi|91105767 signal-regulatory protein alpha precursor [Homo sapi... 32 0.29
gi|91105764 signal-regulatory protein alpha precursor [Homo sapi... 32 0.29
gi|222144244 fibroblast growth factor receptor 2 isoform 9 precu... 32 0.38
gi|222144231 fibroblast growth factor receptor 2 isoform 3 precu... 32 0.38
gi|221316638 fibroblast growth factor receptor 2 isoform 2 precu... 32 0.38
gi|10864029 junctional adhesion molecule 2 precursor [Homo sapiens] 32 0.38
gi|193083163 roundabout, axon guidance receptor, homolog 2 isofo... 31 0.84
gi|61888896 roundabout, axon guidance receptor, homolog 2 isofor... 31 0.84
gi|56788393 myelin oligodendrocyte glycoprotein isoform beta5 pr... 31 0.84
gi|56788391 myelin oligodendrocyte glycoprotein isoform beta2 pr... 31 0.84
gi|56788389 myelin oligodendrocyte glycoprotein isoform alpha3 p... 31 0.84
gi|56788387 myelin oligodendrocyte glycoprotein isoform beta3 pr... 31 0.84
gi|56788385 myelin oligodendrocyte glycoprotein isoform beta1 pr... 31 0.84
gi|56788383 myelin oligodendrocyte glycoprotein isoform alpha2 p... 31 0.84
gi|56788381 myelin oligodendrocyte glycoprotein isoform alpha1 p... 31 0.84
gi|38490688 immunoglobulin superfamily, member 10 [Homo sapiens] 31 0.84
gi|37221189 butyrophilin, subfamily 3, member A1 isoform b [Homo... 30 1.1
gi|222418660 butyrophilin, subfamily 3, member A1 isoform d [Hom... 30 1.1
gi|222418658 butyrophilin, subfamily 3, member A1 isoform c [Hom... 30 1.1
gi|37595558 butyrophilin, subfamily 3, member A1 isoform a [Homo... 30 1.1
gi|66346706 neuronal growth regulator 1 [Homo sapiens] 30 1.4
gi|114199473 vacuolar protein sorting 41 isoform 2 [Homo sapiens] 30 1.4
>gi|4757946 CD83 antigen isoform a [Homo sapiens]
Length = 205
Score = 423 bits (1088), Expect = e-119
Identities = 205/205 (100%), Positives = 205/205 (100%)
Query: 1 MSRGLQLLLLSCAYSLAPATPEVKVACSEDVDLPCTAPWDPQVPYTVSWVKLLEGGEERM 60
MSRGLQLLLLSCAYSLAPATPEVKVACSEDVDLPCTAPWDPQVPYTVSWVKLLEGGEERM
Sbjct: 1 MSRGLQLLLLSCAYSLAPATPEVKVACSEDVDLPCTAPWDPQVPYTVSWVKLLEGGEERM 60
Query: 61 ETPQEDHLRGQHYHQKGQNGSFDAPNERPYSLKIRNTTSCNSGTYRCTLQDPDGQRNLSG 120
ETPQEDHLRGQHYHQKGQNGSFDAPNERPYSLKIRNTTSCNSGTYRCTLQDPDGQRNLSG
Sbjct: 61 ETPQEDHLRGQHYHQKGQNGSFDAPNERPYSLKIRNTTSCNSGTYRCTLQDPDGQRNLSG 120
Query: 121 KVILRVTGCPAQRKEETFKKYRAEIVLLLALVIFYLTLIIFTCKFARLQSIFPDFSKAGM 180
KVILRVTGCPAQRKEETFKKYRAEIVLLLALVIFYLTLIIFTCKFARLQSIFPDFSKAGM
Sbjct: 121 KVILRVTGCPAQRKEETFKKYRAEIVLLLALVIFYLTLIIFTCKFARLQSIFPDFSKAGM 180
Query: 181 ERAFLPVTSPNKHLGLVTPHKTELV 205
ERAFLPVTSPNKHLGLVTPHKTELV
Sbjct: 181 ERAFLPVTSPNKHLGLVTPHKTELV 205
>gi|94421024 CD83 antigen isoform b [Homo sapiens]
Length = 204
Score = 417 bits (1071), Expect = e-117
Identities = 204/205 (99%), Positives = 204/205 (99%), Gaps = 1/205 (0%)
Query: 1 MSRGLQLLLLSCAYSLAPATPEVKVACSEDVDLPCTAPWDPQVPYTVSWVKLLEGGEERM 60
MSRGLQLLLLSCAYSLAPATPEVKVACSEDVDLPCTAPWDPQVPYTVSWVKLLEGGEERM
Sbjct: 1 MSRGLQLLLLSCAYSLAPATPEVKVACSEDVDLPCTAPWDPQVPYTVSWVKLLEGGEERM 60
Query: 61 ETPQEDHLRGQHYHQKGQNGSFDAPNERPYSLKIRNTTSCNSGTYRCTLQDPDGQRNLSG 120
ETPQEDHLRGQHYHQKGQNGSFDAPNERPYSLKIRNTTSCNSGTYRCTLQDPDGQRNLSG
Sbjct: 61 ETPQEDHLRGQHYHQKGQNGSFDAPNERPYSLKIRNTTSCNSGTYRCTLQDPDGQRNLSG 120
Query: 121 KVILRVTGCPAQRKEETFKKYRAEIVLLLALVIFYLTLIIFTCKFARLQSIFPDFSKAGM 180
KVILRVTGCPAQRKEETFKKYRAEIVLLLALVIFYLTLIIFTC FARLQSIFPDFSKAGM
Sbjct: 121 KVILRVTGCPAQRKEETFKKYRAEIVLLLALVIFYLTLIIFTC-FARLQSIFPDFSKAGM 179
Query: 181 ERAFLPVTSPNKHLGLVTPHKTELV 205
ERAFLPVTSPNKHLGLVTPHKTELV
Sbjct: 180 ERAFLPVTSPNKHLGLVTPHKTELV 204
>gi|53829379 plasminogen activator, urokinase receptor isoform 2
precursor [Homo sapiens]
Length = 281
Score = 34.3 bits (77), Expect = 0.076
Identities = 33/105 (31%), Positives = 46/105 (43%), Gaps = 16/105 (15%)
Query: 2 SRGLQLLLLSCAYSLAPATPEVKVACSEDVDLPCTAPWDPQVPYTVSWVKLLEGGEERME 61
SR L +SC S ++ L C +P + + W++ EG E R
Sbjct: 110 SRSRYLECISCGSS------DMSCERGRHQSLQCRSPEEQCLDVVTHWIQ--EGEEGR-- 159
Query: 62 TPQED-HLRGQHYHQ--KGQNGSFDAPNERPYSLKIRNTTSCNSG 103
P++D HLRG Y G NG + N+ + LK NTT CN G
Sbjct: 160 -PKDDRHLRGCGYLPGCPGSNGFHN--NDTFHFLKCCNTTKCNEG 201
>gi|4505865 plasminogen activator, urokinase receptor isoform 1
precursor [Homo sapiens]
Length = 335
Score = 34.3 bits (77), Expect = 0.076
Identities = 33/105 (31%), Positives = 46/105 (43%), Gaps = 16/105 (15%)
Query: 2 SRGLQLLLLSCAYSLAPATPEVKVACSEDVDLPCTAPWDPQVPYTVSWVKLLEGGEERME 61
SR L +SC S ++ L C +P + + W++ EG E R
Sbjct: 110 SRSRYLECISCGSS------DMSCERGRHQSLQCRSPEEQCLDVVTHWIQ--EGEEGR-- 159
Query: 62 TPQED-HLRGQHYHQ--KGQNGSFDAPNERPYSLKIRNTTSCNSG 103
P++D HLRG Y G NG + N+ + LK NTT CN G
Sbjct: 160 -PKDDRHLRGCGYLPGCPGSNGFHN--NDTFHFLKCCNTTKCNEG 201
>gi|20127422 Down syndrome cell adhesion molecule isoform CHD2-42
precursor [Homo sapiens]
Length = 2012
Score = 34.3 bits (77), Expect = 0.076
Identities = 38/144 (26%), Positives = 55/144 (38%), Gaps = 16/144 (11%)
Query: 9 LLSCAYSLAPATPEVKVACSEDVDLPCTAPWDPQVPYTVSWVKLLEGGEERMETPQEDHL 68
L S Y + + EV A + +PC A P P T+ W L GEE + P
Sbjct: 20 LHSSLYFVNASLQEVVFASTTGTLVPCPAAGIP--PVTLRWY--LATGEEIYDVPGI--- 72
Query: 69 RGQHYHQKGQNGSFDAPNERPYSLKIRNTTSCNSGTYRCTLQDPDGQRNLSGKVILRVTG 128
+H H G F P P S +T + TY CT ++P G+ I V
Sbjct: 73 --RHVHPNGTLQIFPFP---PSSF----STLIHDNTYYCTAENPSGKIRSQDVHIKAVLR 123
Query: 129 CPAQRKEETFKKYRAEIVLLLALV 152
P + E K R + + ++
Sbjct: 124 EPYTVRVEDQKTMRGNVAVFKCII 147
>gi|75709184 contactin 3 [Homo sapiens]
Length = 1028
Score = 33.9 bits (76), Expect = 0.099
Identities = 34/116 (29%), Positives = 47/116 (40%), Gaps = 20/116 (17%)
Query: 15 SLAPATPEVKVACSEDVDLPCTAPWDPQVPYTVSWVKLLEGGEERMETPQEDHLRGQHYH 74
+LAP+ +V V E V LPC DP + +W G + G H+
Sbjct: 503 TLAPSNMDVSVG--ESVILPCQVQHDPLLDIIFTW--YFNGALADFKKD------GSHFE 552
Query: 75 QKGQNGSFDAPNERPYSLKIRNTTSCNSGTYRCTLQDPDGQRNLSGKVILRVTGCP 130
+ G + S D L IRN +SG Y C +Q G ++S L V G P
Sbjct: 553 KVGGSSSGD--------LMIRNIQLKHSGKYVCMVQ--TGVDSVSSAADLIVRGSP 598
Score = 28.1 bits (61), Expect = 5.5
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Query: 92 LKIRNTTSCNSGTYRCTLQDPDGQRNLSGKVIL----RVTGCPA 131
LKI N T ++GTY C ++ G+ N + +++ R+T P+
Sbjct: 464 LKIANVTKADAGTYTCMAENQFGKANGTTHLVVTEPTRITLAPS 507
>gi|4503173 coxsackie virus and adenovirus receptor precursor [Homo
sapiens]
Length = 365
Score = 33.5 bits (75), Expect = 0.13
Identities = 34/125 (27%), Positives = 56/125 (44%), Gaps = 23/125 (18%)
Query: 92 LKIRNTTSCNSGTYRCTLQDPDGQRNLSGKVILRVTGCPAQRKEETFKKYRAEIVLLLAL 151
+ ++N +S SGTY CT+++ G S + +LR+ P K A I LLAL
Sbjct: 197 ISVKNASSEYSGTYSCTVRNRVG----SDQCLLRLNVVPPSNKAGLIA--GAIIGTLLAL 250
Query: 152 VIFYLTLIIFTCKFARLQSIF-------------PDFSKAGMERAFLPVTSPNKHLGLVT 198
+ + LIIF C+ R + + P S+ R++ + S + LG ++
Sbjct: 251 AL--IGLIIFCCRKKRREEKYEKEVHHDIREDVPPPKSRTSTARSY--IGSNHSSLGSMS 306
Query: 199 PHKTE 203
P E
Sbjct: 307 PSNME 311
>gi|18426911 signal-regulatory protein alpha precursor [Homo
sapiens]
Length = 504
Score = 32.3 bits (72), Expect = 0.29
Identities = 29/111 (26%), Positives = 44/111 (39%), Gaps = 17/111 (15%)
Query: 7 LLLLSCAYSLAPATPEVKV---------ACSEDVDLPCTAPWDPQVPY-TVSWVKLLEGG 56
LL SCA+S E++V A E L CTA +P + W + G
Sbjct: 18 LLAASCAWSGVAGEEELQVIQPDKSVLVAAGETATLRCTAT--SLIPVGPIQWFRGAGPG 75
Query: 57 EERMETPQEDHLRGQHYHQKGQNGSFDAPNERPYSLKIRNTTSCNSGTYRC 107
E + +E H + + N +S++I N T ++GTY C
Sbjct: 76 RELIYNQKEGH-----FPRVTTVSDLTKRNNMDFSIRIGNITPADAGTYYC 121
>gi|91105767 signal-regulatory protein alpha precursor [Homo
sapiens]
Length = 504
Score = 32.3 bits (72), Expect = 0.29
Identities = 29/111 (26%), Positives = 44/111 (39%), Gaps = 17/111 (15%)
Query: 7 LLLLSCAYSLAPATPEVKV---------ACSEDVDLPCTAPWDPQVPY-TVSWVKLLEGG 56
LL SCA+S E++V A E L CTA +P + W + G
Sbjct: 18 LLAASCAWSGVAGEEELQVIQPDKSVLVAAGETATLRCTAT--SLIPVGPIQWFRGAGPG 75
Query: 57 EERMETPQEDHLRGQHYHQKGQNGSFDAPNERPYSLKIRNTTSCNSGTYRC 107
E + +E H + + N +S++I N T ++GTY C
Sbjct: 76 RELIYNQKEGH-----FPRVTTVSDLTKRNNMDFSIRIGNITPADAGTYYC 121
>gi|91105764 signal-regulatory protein alpha precursor [Homo
sapiens]
Length = 504
Score = 32.3 bits (72), Expect = 0.29
Identities = 29/111 (26%), Positives = 44/111 (39%), Gaps = 17/111 (15%)
Query: 7 LLLLSCAYSLAPATPEVKV---------ACSEDVDLPCTAPWDPQVPY-TVSWVKLLEGG 56
LL SCA+S E++V A E L CTA +P + W + G
Sbjct: 18 LLAASCAWSGVAGEEELQVIQPDKSVLVAAGETATLRCTAT--SLIPVGPIQWFRGAGPG 75
Query: 57 EERMETPQEDHLRGQHYHQKGQNGSFDAPNERPYSLKIRNTTSCNSGTYRC 107
E + +E H + + N +S++I N T ++GTY C
Sbjct: 76 RELIYNQKEGH-----FPRVTTVSDLTKRNNMDFSIRIGNITPADAGTYYC 121
>gi|222144244 fibroblast growth factor receptor 2 isoform 9
precursor [Homo sapiens]
Length = 680
Score = 32.0 bits (71), Expect = 0.38
Identities = 36/150 (24%), Positives = 63/150 (42%), Gaps = 14/150 (9%)
Query: 30 DVDLPCTAPWDPQVPYTVSWVKLLEGGEERMETPQEDHLRGQHYHQKGQNGSFDAPNERP 89
DV+ C D Q P+ + W+K +E + G Y + ++ ++ N
Sbjct: 184 DVEFVCKVYSDAQ-PH-IQWIKHVEKNGSKYGPD------GLPYLKVLKHSGINSSNAEV 235
Query: 90 YSLKIRNTTSCNSGTYRCTLQDPDGQRNLSG-KVILRVTGCPAQRKEETFKKYRAEIVLL 148
L + N T ++G Y C + + GQ N S +L P + KE T EI +
Sbjct: 236 --LALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQAPGREKEITASPDYLEIA-I 292
Query: 149 LALVIFYLTLIIFTCKFARLQSIF--PDFS 176
+ +F + ++ T R+++ PDFS
Sbjct: 293 YCIGVFLIACMVVTVILCRMKNTTKKPDFS 322
>gi|222144231 fibroblast growth factor receptor 2 isoform 3
precursor [Homo sapiens]
Length = 769
Score = 32.0 bits (71), Expect = 0.38
Identities = 36/150 (24%), Positives = 63/150 (42%), Gaps = 14/150 (9%)
Query: 30 DVDLPCTAPWDPQVPYTVSWVKLLEGGEERMETPQEDHLRGQHYHQKGQNGSFDAPNERP 89
DV+ C D Q P+ + W+K +E + G Y + ++ ++ N
Sbjct: 273 DVEFVCKVYSDAQ-PH-IQWIKHVEKNGSKYGPD------GLPYLKVLKHSGINSSNAEV 324
Query: 90 YSLKIRNTTSCNSGTYRCTLQDPDGQRNLSG-KVILRVTGCPAQRKEETFKKYRAEIVLL 148
L + N T ++G Y C + + GQ N S +L P + KE T EI +
Sbjct: 325 --LALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQAPGREKEITASPDYLEIA-I 381
Query: 149 LALVIFYLTLIIFTCKFARLQSIF--PDFS 176
+ +F + ++ T R+++ PDFS
Sbjct: 382 YCIGVFLIACMVVTVILCRMKNTTKKPDFS 411
>gi|221316638 fibroblast growth factor receptor 2 isoform 2
precursor [Homo sapiens]
Length = 822
Score = 32.0 bits (71), Expect = 0.38
Identities = 36/150 (24%), Positives = 63/150 (42%), Gaps = 14/150 (9%)
Query: 30 DVDLPCTAPWDPQVPYTVSWVKLLEGGEERMETPQEDHLRGQHYHQKGQNGSFDAPNERP 89
DV+ C D Q P+ + W+K +E + G Y + ++ ++ N
Sbjct: 273 DVEFVCKVYSDAQ-PH-IQWIKHVEKNGSKYGPD------GLPYLKVLKHSGINSSNAEV 324
Query: 90 YSLKIRNTTSCNSGTYRCTLQDPDGQRNLSG-KVILRVTGCPAQRKEETFKKYRAEIVLL 148
L + N T ++G Y C + + GQ N S +L P + KE T EI +
Sbjct: 325 --LALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQAPGREKEITASPDYLEIA-I 381
Query: 149 LALVIFYLTLIIFTCKFARLQSIF--PDFS 176
+ +F + ++ T R+++ PDFS
Sbjct: 382 YCIGVFLIACMVVTVILCRMKNTTKKPDFS 411
>gi|10864029 junctional adhesion molecule 2 precursor [Homo sapiens]
Length = 298
Score = 32.0 bits (71), Expect = 0.38
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 73 YHQKGQNGSFDAPNER-PYSLKIRNTTSCNSGTYRCTLQDP--DGQRNLSGKVILRVTGC 129
Y+Q+ G F E ++++I+N T ++G YRC + P GQ V L V
Sbjct: 74 YYQQTLQGDFKNRAEMIDFNIRIKNVTRSDAGKYRCEVSAPSEQGQNLEEDTVTLEVLVA 133
Query: 130 PA 131
PA
Sbjct: 134 PA 135
>gi|193083163 roundabout, axon guidance receptor, homolog 2 isoform
ROBO2a [Homo sapiens]
Length = 1394
Score = 30.8 bits (68), Expect = 0.84
Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 25/97 (25%)
Query: 29 EDVDLPCTAPWDPQVPYTVSWVKLLEGGEERMETPQEDHLRGQHYHQKGQNGSFDAPNER 88
E V+ C DPQ TV W K + + P+ G +D ++
Sbjct: 256 EAVEFRCQVQGDPQP--TVRWKK------DDADLPR---------------GRYDIKDD- 291
Query: 89 PYSLKIRNTTSCNSGTYRCTLQDPDGQRNLSGKVILR 125
Y+L+I+ T S + GTY C ++ G+ S + +R
Sbjct: 292 -YTLRIKKTMSTDEGTYMCIAENRVGKMEASATLTVR 327
>gi|61888896 roundabout, axon guidance receptor, homolog 2 isoform
ROBO2b [Homo sapiens]
Length = 1378
Score = 30.8 bits (68), Expect = 0.84
Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 25/97 (25%)
Query: 29 EDVDLPCTAPWDPQVPYTVSWVKLLEGGEERMETPQEDHLRGQHYHQKGQNGSFDAPNER 88
E V+ C DPQ TV W K + + P+ G +D ++
Sbjct: 240 EAVEFRCQVQGDPQP--TVRWKK------DDADLPR---------------GRYDIKDD- 275
Query: 89 PYSLKIRNTTSCNSGTYRCTLQDPDGQRNLSGKVILR 125
Y+L+I+ T S + GTY C ++ G+ S + +R
Sbjct: 276 -YTLRIKKTMSTDEGTYMCIAENRVGKMEASATLTVR 311
>gi|56788393 myelin oligodendrocyte glycoprotein isoform beta5
precursor [Homo sapiens]
Length = 213
Score = 30.8 bits (68), Expect = 0.84
Identities = 43/183 (23%), Positives = 78/183 (42%), Gaps = 36/183 (19%)
Query: 5 LQLLLLSCAYS-----LAPATPEVKVACSEDVDLPCT-APWDPQVPYTVSW--------V 50
L LL +S +Y+ + P P ++ ++V+LPC +P V W V
Sbjct: 19 LLLLQVSSSYAGQFRVIGPRHP-IRALVGDEVELPCRISPGKNATGMEVGWYRPPFSRVV 77
Query: 51 KLLEGGEERMETPQEDHLRGQHYHQKGQNGSFDAPNERPYSLKIRNTTSCNSGTYRCTLQ 110
L G+++ + Q RG+ K DA E +L+IRN + G + C +
Sbjct: 78 HLYRNGKDQ-DGDQAPEYRGRTELLK------DAIGEGKVTLRIRNVRFSDEGGFTCFFR 130
Query: 111 DPDGQRNLSGKVILRVTGCPAQRKEETFKKYRAEIVLLLA---LVIFYLTL-IIFTCKFA 166
D Q + ++ + E+ F +++LLA +++ +T+ +IF C
Sbjct: 131 DHSYQEEAAMEL----------KVEDPFYWVSPGVLVLLAVLPVLLLQITVGLIFLCLQY 180
Query: 167 RLQ 169
RL+
Sbjct: 181 RLR 183
>gi|56788391 myelin oligodendrocyte glycoprotein isoform beta2
precursor [Homo sapiens]
Length = 206
Score = 30.8 bits (68), Expect = 0.84
Identities = 43/183 (23%), Positives = 78/183 (42%), Gaps = 36/183 (19%)
Query: 5 LQLLLLSCAYS-----LAPATPEVKVACSEDVDLPCT-APWDPQVPYTVSW--------V 50
L LL +S +Y+ + P P ++ ++V+LPC +P V W V
Sbjct: 19 LLLLQVSSSYAGQFRVIGPRHP-IRALVGDEVELPCRISPGKNATGMEVGWYRPPFSRVV 77
Query: 51 KLLEGGEERMETPQEDHLRGQHYHQKGQNGSFDAPNERPYSLKIRNTTSCNSGTYRCTLQ 110
L G+++ + Q RG+ K DA E +L+IRN + G + C +
Sbjct: 78 HLYRNGKDQ-DGDQAPEYRGRTELLK------DAIGEGKVTLRIRNVRFSDEGGFTCFFR 130
Query: 111 DPDGQRNLSGKVILRVTGCPAQRKEETFKKYRAEIVLLLA---LVIFYLTL-IIFTCKFA 166
D Q + ++ + E+ F +++LLA +++ +T+ +IF C
Sbjct: 131 DHSYQEEAAMEL----------KVEDPFYWVSPGVLVLLAVLPVLLLQITVGLIFLCLQY 180
Query: 167 RLQ 169
RL+
Sbjct: 181 RLR 183
>gi|56788389 myelin oligodendrocyte glycoprotein isoform alpha3
precursor [Homo sapiens]
Length = 224
Score = 30.8 bits (68), Expect = 0.84
Identities = 43/183 (23%), Positives = 78/183 (42%), Gaps = 36/183 (19%)
Query: 5 LQLLLLSCAYS-----LAPATPEVKVACSEDVDLPCT-APWDPQVPYTVSW--------V 50
L LL +S +Y+ + P P ++ ++V+LPC +P V W V
Sbjct: 19 LLLLQVSSSYAGQFRVIGPRHP-IRALVGDEVELPCRISPGKNATGMEVGWYRPPFSRVV 77
Query: 51 KLLEGGEERMETPQEDHLRGQHYHQKGQNGSFDAPNERPYSLKIRNTTSCNSGTYRCTLQ 110
L G+++ + Q RG+ K DA E +L+IRN + G + C +
Sbjct: 78 HLYRNGKDQ-DGDQAPEYRGRTELLK------DAIGEGKVTLRIRNVRFSDEGGFTCFFR 130
Query: 111 DPDGQRNLSGKVILRVTGCPAQRKEETFKKYRAEIVLLLA---LVIFYLTL-IIFTCKFA 166
D Q + ++ + E+ F +++LLA +++ +T+ +IF C
Sbjct: 131 DHSYQEEAAMEL----------KVEDPFYWVSPGVLVLLAVLPVLLLQITVGLIFLCLQY 180
Query: 167 RLQ 169
RL+
Sbjct: 181 RLR 183
>gi|56788387 myelin oligodendrocyte glycoprotein isoform beta3
precursor [Homo sapiens]
Length = 229
Score = 30.8 bits (68), Expect = 0.84
Identities = 43/183 (23%), Positives = 78/183 (42%), Gaps = 36/183 (19%)
Query: 5 LQLLLLSCAYS-----LAPATPEVKVACSEDVDLPCT-APWDPQVPYTVSW--------V 50
L LL +S +Y+ + P P ++ ++V+LPC +P V W V
Sbjct: 19 LLLLQVSSSYAGQFRVIGPRHP-IRALVGDEVELPCRISPGKNATGMEVGWYRPPFSRVV 77
Query: 51 KLLEGGEERMETPQEDHLRGQHYHQKGQNGSFDAPNERPYSLKIRNTTSCNSGTYRCTLQ 110
L G+++ + Q RG+ K DA E +L+IRN + G + C +
Sbjct: 78 HLYRNGKDQ-DGDQAPEYRGRTELLK------DAIGEGKVTLRIRNVRFSDEGGFTCFFR 130
Query: 111 DPDGQRNLSGKVILRVTGCPAQRKEETFKKYRAEIVLLLA---LVIFYLTL-IIFTCKFA 166
D Q + ++ + E+ F +++LLA +++ +T+ +IF C
Sbjct: 131 DHSYQEEAAMEL----------KVEDPFYWVSPGVLVLLAVLPVLLLQITVGLIFLCLQY 180
Query: 167 RLQ 169
RL+
Sbjct: 181 RLR 183
>gi|56788385 myelin oligodendrocyte glycoprotein isoform beta1
precursor [Homo sapiens]
Length = 252
Score = 30.8 bits (68), Expect = 0.84
Identities = 43/183 (23%), Positives = 78/183 (42%), Gaps = 36/183 (19%)
Query: 5 LQLLLLSCAYS-----LAPATPEVKVACSEDVDLPCT-APWDPQVPYTVSW--------V 50
L LL +S +Y+ + P P ++ ++V+LPC +P V W V
Sbjct: 19 LLLLQVSSSYAGQFRVIGPRHP-IRALVGDEVELPCRISPGKNATGMEVGWYRPPFSRVV 77
Query: 51 KLLEGGEERMETPQEDHLRGQHYHQKGQNGSFDAPNERPYSLKIRNTTSCNSGTYRCTLQ 110
L G+++ + Q RG+ K DA E +L+IRN + G + C +
Sbjct: 78 HLYRNGKDQ-DGDQAPEYRGRTELLK------DAIGEGKVTLRIRNVRFSDEGGFTCFFR 130
Query: 111 DPDGQRNLSGKVILRVTGCPAQRKEETFKKYRAEIVLLLA---LVIFYLTL-IIFTCKFA 166
D Q + ++ + E+ F +++LLA +++ +T+ +IF C
Sbjct: 131 DHSYQEEAAMEL----------KVEDPFYWVSPGVLVLLAVLPVLLLQITVGLIFLCLQY 180
Query: 167 RLQ 169
RL+
Sbjct: 181 RLR 183
>gi|56788383 myelin oligodendrocyte glycoprotein isoform alpha2
precursor [Homo sapiens]
Length = 208
Score = 30.8 bits (68), Expect = 0.84
Identities = 43/183 (23%), Positives = 78/183 (42%), Gaps = 36/183 (19%)
Query: 5 LQLLLLSCAYS-----LAPATPEVKVACSEDVDLPCT-APWDPQVPYTVSW--------V 50
L LL +S +Y+ + P P ++ ++V+LPC +P V W V
Sbjct: 19 LLLLQVSSSYAGQFRVIGPRHP-IRALVGDEVELPCRISPGKNATGMEVGWYRPPFSRVV 77
Query: 51 KLLEGGEERMETPQEDHLRGQHYHQKGQNGSFDAPNERPYSLKIRNTTSCNSGTYRCTLQ 110
L G+++ + Q RG+ K DA E +L+IRN + G + C +
Sbjct: 78 HLYRNGKDQ-DGDQAPEYRGRTELLK------DAIGEGKVTLRIRNVRFSDEGGFTCFFR 130
Query: 111 DPDGQRNLSGKVILRVTGCPAQRKEETFKKYRAEIVLLLA---LVIFYLTL-IIFTCKFA 166
D Q + ++ + E+ F +++LLA +++ +T+ +IF C
Sbjct: 131 DHSYQEEAAMEL----------KVEDPFYWVSPGVLVLLAVLPVLLLQITVGLIFLCLQY 180
Query: 167 RLQ 169
RL+
Sbjct: 181 RLR 183
>gi|56788381 myelin oligodendrocyte glycoprotein isoform alpha1
precursor [Homo sapiens]
Length = 247
Score = 30.8 bits (68), Expect = 0.84
Identities = 43/183 (23%), Positives = 78/183 (42%), Gaps = 36/183 (19%)
Query: 5 LQLLLLSCAYS-----LAPATPEVKVACSEDVDLPCT-APWDPQVPYTVSW--------V 50
L LL +S +Y+ + P P ++ ++V+LPC +P V W V
Sbjct: 19 LLLLQVSSSYAGQFRVIGPRHP-IRALVGDEVELPCRISPGKNATGMEVGWYRPPFSRVV 77
Query: 51 KLLEGGEERMETPQEDHLRGQHYHQKGQNGSFDAPNERPYSLKIRNTTSCNSGTYRCTLQ 110
L G+++ + Q RG+ K DA E +L+IRN + G + C +
Sbjct: 78 HLYRNGKDQ-DGDQAPEYRGRTELLK------DAIGEGKVTLRIRNVRFSDEGGFTCFFR 130
Query: 111 DPDGQRNLSGKVILRVTGCPAQRKEETFKKYRAEIVLLLA---LVIFYLTL-IIFTCKFA 166
D Q + ++ + E+ F +++LLA +++ +T+ +IF C
Sbjct: 131 DHSYQEEAAMEL----------KVEDPFYWVSPGVLVLLAVLPVLLLQITVGLIFLCLQY 180
Query: 167 RLQ 169
RL+
Sbjct: 181 RLR 183
>gi|38490688 immunoglobulin superfamily, member 10 [Homo sapiens]
Length = 2623
Score = 30.8 bits (68), Expect = 0.84
Identities = 26/103 (25%), Positives = 39/103 (37%), Gaps = 19/103 (18%)
Query: 20 TPEVKVACSEDVDLPCTAPWDPQVPYTVSWVKLLEGGEERMETPQEDHLRGQHYHQKGQN 79
T E+ V V+L C A P TV+W+ L Q +
Sbjct: 1752 TKEITVHSGSTVELKCRAEGRPSP--TVTWI-----------------LANQTVVSESSQ 1792
Query: 80 GSFDAPNERPYSLKIRNTTSCNSGTYRCTLQDPDGQRNLSGKV 122
GS A +L + N + + G Y+C +P GQ +L K+
Sbjct: 1793 GSRQAVVTVDGTLVLHNLSIYDRGFYKCVASNPGGQDSLLVKI 1835
>gi|37221189 butyrophilin, subfamily 3, member A1 isoform b [Homo
sapiens]
Length = 352
Score = 30.4 bits (67), Expect = 1.1
Identities = 33/119 (27%), Positives = 48/119 (40%), Gaps = 17/119 (14%)
Query: 5 LQLLLL-SCAYSLAPATPEVKVACSEDVDLPCTA-PWDPQVPYTVSWVK--------LLE 54
LQLL+ S +S+ + + ED DLPC P + WV +
Sbjct: 21 LQLLMPHSAQFSVLGPSGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYA 80
Query: 55 GGEERMETPQEDHLRGQHYHQKGQNGSFDAPNERPYSLKIRNTTSCNSGTYRCTLQDPD 113
G+E +E Q RG+ + D +L+I N T+ +SG Y C QD D
Sbjct: 81 DGKE-VEDRQSAPYRGRTSILR------DGITAGKAALRIHNVTASDSGKYLCYFQDGD 132
>gi|222418660 butyrophilin, subfamily 3, member A1 isoform d [Homo
sapiens]
Length = 378
Score = 30.4 bits (67), Expect = 1.1
Identities = 33/119 (27%), Positives = 48/119 (40%), Gaps = 17/119 (14%)
Query: 5 LQLLLL-SCAYSLAPATPEVKVACSEDVDLPCTA-PWDPQVPYTVSWVK--------LLE 54
LQLL+ S +S+ + + ED DLPC P + WV +
Sbjct: 21 LQLLMPHSAQFSVLGPSGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYA 80
Query: 55 GGEERMETPQEDHLRGQHYHQKGQNGSFDAPNERPYSLKIRNTTSCNSGTYRCTLQDPD 113
G+E +E Q RG+ + D +L+I N T+ +SG Y C QD D
Sbjct: 81 DGKE-VEDRQSAPYRGRTSILR------DGITAGKAALRIHNVTASDSGKYLCYFQDGD 132
>gi|222418658 butyrophilin, subfamily 3, member A1 isoform c [Homo
sapiens]
Length = 461
Score = 30.4 bits (67), Expect = 1.1
Identities = 33/119 (27%), Positives = 48/119 (40%), Gaps = 17/119 (14%)
Query: 5 LQLLLL-SCAYSLAPATPEVKVACSEDVDLPCTA-PWDPQVPYTVSWVK--------LLE 54
LQLL+ S +S+ + + ED DLPC P + WV +
Sbjct: 21 LQLLMPHSAQFSVLGPSGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYA 80
Query: 55 GGEERMETPQEDHLRGQHYHQKGQNGSFDAPNERPYSLKIRNTTSCNSGTYRCTLQDPD 113
G+E +E Q RG+ + D +L+I N T+ +SG Y C QD D
Sbjct: 81 DGKE-VEDRQSAPYRGRTSILR------DGITAGKAALRIHNVTASDSGKYLCYFQDGD 132
>gi|37595558 butyrophilin, subfamily 3, member A1 isoform a [Homo
sapiens]
Length = 513
Score = 30.4 bits (67), Expect = 1.1
Identities = 33/119 (27%), Positives = 48/119 (40%), Gaps = 17/119 (14%)
Query: 5 LQLLLL-SCAYSLAPATPEVKVACSEDVDLPCTA-PWDPQVPYTVSWVK--------LLE 54
LQLL+ S +S+ + + ED DLPC P + WV +
Sbjct: 21 LQLLMPHSAQFSVLGPSGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYA 80
Query: 55 GGEERMETPQEDHLRGQHYHQKGQNGSFDAPNERPYSLKIRNTTSCNSGTYRCTLQDPD 113
G+E +E Q RG+ + D +L+I N T+ +SG Y C QD D
Sbjct: 81 DGKE-VEDRQSAPYRGRTSILR------DGITAGKAALRIHNVTASDSGKYLCYFQDGD 132
>gi|66346706 neuronal growth regulator 1 [Homo sapiens]
Length = 354
Score = 30.0 bits (66), Expect = 1.4
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 81 SFDAPNERPYSLKIRNTTSCNSGTYRCTLQDPDGQRNLSGKVILRV 126
S N+R YSL+I+N + G Y C++Q R + + ++V
Sbjct: 92 SISTLNKRDYSLQIQNVDVTDDGPYTCSVQTQHTPRTMQVHLTVQV 137
>gi|114199473 vacuolar protein sorting 41 isoform 2 [Homo sapiens]
Length = 829
Score = 30.0 bits (66), Expect = 1.4
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 13/64 (20%)
Query: 47 VSWVKLLEGGEERMETP--------QEDHLRGQHYHQK--GQNGSFDAPNERPYSLKIRN 96
+S K++E E+R E + DH +GQ YH+K +D PN P+ +R+
Sbjct: 553 ISIKKVVEELEDRPELQHVYLHKLFKRDHHKGQRYHEKQISLYAEYDRPNLLPF---LRD 609
Query: 97 TTSC 100
+T C
Sbjct: 610 STHC 613
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.136 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,712,752
Number of Sequences: 37866
Number of extensions: 403724
Number of successful extensions: 1374
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 49
Number of HSP's that attempted gapping in prelim test: 1212
Number of HSP's gapped (non-prelim): 212
length of query: 205
length of database: 18,247,518
effective HSP length: 97
effective length of query: 108
effective length of database: 14,574,516
effective search space: 1574047728
effective search space used: 1574047728
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.