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Search of human proteins with 47578097
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|47578097 UCH interacting protein 1 isoform b [Homo sapiens]
(427 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|47578097 UCH interacting protein 1 isoform b [Homo sapiens] 870 0.0
gi|66346717 UCH interacting protein 1 isoform a [Homo sapiens] 708 0.0
gi|121582655 ankyrin repeat domain 35 [Homo sapiens] 35 0.100
gi|139394604 bromo adjacent homology domain containing 1 [Homo s... 34 0.22
gi|31543179 hypothetical protein LOC78995 [Homo sapiens] 34 0.29
gi|23308715 SRY (sex determining region Y)-box 5 isoform b [Homo... 32 0.84
gi|23308713 SRY (sex determining region Y)-box 5 isoform a [Homo... 32 0.84
gi|148596984 golgi autoantigen, golgin subfamily b, macrogolgin ... 32 0.84
gi|44680122 tripartite motif-containing 7 isoform 1 [Homo sapiens] 32 0.84
gi|157419126 laminin, alpha 4 isoform 2 precursor [Homo sapiens] 32 1.1
gi|157419124 laminin, alpha 4 isoform 1 precursor [Homo sapiens] 32 1.1
gi|157419122 laminin, alpha 4 isoform 2 precursor [Homo sapiens] 32 1.1
gi|229577185 epidermal growth factor receptor pathway substrate ... 32 1.4
gi|4503593 epidermal growth factor receptor pathway substrate 15... 32 1.4
gi|156631005 proteasome 26S non-ATPase subunit 8 [Homo sapiens] 32 1.4
gi|55953112 ret finger protein 2 isoform 2 [Homo sapiens] 32 1.4
gi|47132524 ret finger protein 2 isoform 1 [Homo sapiens] 32 1.4
gi|16445412 ret finger protein 2 isoform 1 [Homo sapiens] 32 1.4
gi|47132521 ret finger protein 2 isoform 1 [Homo sapiens] 32 1.4
gi|5032281 dystrophin Dp427c isoform [Homo sapiens] 31 2.5
gi|5032291 dystrophin Dp260-2 isoform [Homo sapiens] 31 2.5
gi|150036268 dystrophin Dp260-1 isoform [Homo sapiens] 31 2.5
gi|5032315 dystrophin Dp427p2 isoform [Homo sapiens] 31 2.5
gi|5032287 dystrophin Dp427p1 isoform [Homo sapiens] 31 2.5
gi|10337581 type I hair keratin 3B [Homo sapiens] 31 2.5
gi|5032285 dystrophin Dp427l isoform [Homo sapiens] 31 2.5
gi|5032283 dystrophin Dp427m isoform [Homo sapiens] 31 2.5
gi|224967054 SRY (sex determining region Y)-box 6 isoform 4 [Hom... 30 3.2
gi|224967050 SRY (sex determining region Y)-box 6 isoform 3 [Hom... 30 3.2
gi|70909338 SRY (sex determining region Y)-box 6 isoform 1 [Homo... 30 3.2
>gi|47578097 UCH interacting protein 1 isoform b [Homo sapiens]
Length = 427
Score = 870 bits (2249), Expect = 0.0
Identities = 427/427 (100%), Positives = 427/427 (100%)
Query: 1 MGGARLGARNMAGQDAGCGRGGDDYSEDEGDSSVSRAAVEVFGKLKDLNCPFLEGLYITE 60
MGGARLGARNMAGQDAGCGRGGDDYSEDEGDSSVSRAAVEVFGKLKDLNCPFLEGLYITE
Sbjct: 1 MGGARLGARNMAGQDAGCGRGGDDYSEDEGDSSVSRAAVEVFGKLKDLNCPFLEGLYITE 60
Query: 61 PKTIQELLCSPSEYRLEILEWMCTRVWPSLQDRFSSLKGVPTEVKIQEMTKLGHELMLCA 120
PKTIQELLCSPSEYRLEILEWMCTRVWPSLQDRFSSLKGVPTEVKIQEMTKLGHELMLCA
Sbjct: 61 PKTIQELLCSPSEYRLEILEWMCTRVWPSLQDRFSSLKGVPTEVKIQEMTKLGHELMLCA 120
Query: 121 PDDQELLKGCACAQKQLHFMDQLLDTIRSLTIGCSSCSSLMEHFEDTREKNEALLGELFS 180
PDDQELLKGCACAQKQLHFMDQLLDTIRSLTIGCSSCSSLMEHFEDTREKNEALLGELFS
Sbjct: 121 PDDQELLKGCACAQKQLHFMDQLLDTIRSLTIGCSSCSSLMEHFEDTREKNEALLGELFS 180
Query: 181 SPHLQMLLNPECDPWPLDMQPLLNKQSDDWQWASASAKSEEEEKLAELARQLQESAAKLH 240
SPHLQMLLNPECDPWPLDMQPLLNKQSDDWQWASASAKSEEEEKLAELARQLQESAAKLH
Sbjct: 181 SPHLQMLLNPECDPWPLDMQPLLNKQSDDWQWASASAKSEEEEKLAELARQLQESAAKLH 240
Query: 241 ALRTEYFAQHEQGAAAGAADISTLDQKLRLVTSDFHQLILAFLQVYDDELGECCQRPGPD 300
ALRTEYFAQHEQGAAAGAADISTLDQKLRLVTSDFHQLILAFLQVYDDELGECCQRPGPD
Sbjct: 241 ALRTEYFAQHEQGAAAGAADISTLDQKLRLVTSDFHQLILAFLQVYDDELGECCQRPGPD 300
Query: 301 LHPCGPIIQATHQNLTSYSQIPRGQPKKPALVTMTTVPTCATLPLAQGFRDVHFGFLSER 360
LHPCGPIIQATHQNLTSYSQIPRGQPKKPALVTMTTVPTCATLPLAQGFRDVHFGFLSER
Sbjct: 301 LHPCGPIIQATHQNLTSYSQIPRGQPKKPALVTMTTVPTCATLPLAQGFRDVHFGFLSER 360
Query: 361 LRAFQPLTGWSCETPRSGMLLQVVMAVADTSAKAVETVKKQQGEQICWGGSSSVMSLATK 420
LRAFQPLTGWSCETPRSGMLLQVVMAVADTSAKAVETVKKQQGEQICWGGSSSVMSLATK
Sbjct: 361 LRAFQPLTGWSCETPRSGMLLQVVMAVADTSAKAVETVKKQQGEQICWGGSSSVMSLATK 420
Query: 421 MNELMEK 427
MNELMEK
Sbjct: 421 MNELMEK 427
>gi|66346717 UCH interacting protein 1 isoform a [Homo sapiens]
Length = 368
Score = 708 bits (1827), Expect = 0.0
Identities = 364/427 (85%), Positives = 365/427 (85%), Gaps = 59/427 (13%)
Query: 1 MGGARLGARNMAGQDAGCGRGGDDYSEDEGDSSVSRAAVEVFGKLKDLNCPFLEGLYITE 60
MGGARLGARNMAGQDAGCGRGGDDYSEDEGDSSVSRAAVEVFGKLKDLNCPFLEGLYITE
Sbjct: 1 MGGARLGARNMAGQDAGCGRGGDDYSEDEGDSSVSRAAVEVFGKLKDLNCPFLEGLYITE 60
Query: 61 PKTIQELLCSPSEYRLEILEWMCTRVWPSLQDRFSSLKGVPTEVKIQEMTKLGHELMLCA 120
PKTIQELLCSPSEYRLEILEWMCTRVWPSLQDRFSSLKGVPTEVKIQEMTKLGHELMLCA
Sbjct: 61 PKTIQELLCSPSEYRLEILEWMCTRVWPSLQDRFSSLKGVPTEVKIQEMTKLGHELMLCA 120
Query: 121 PDDQELLKGCACAQKQLHFMDQLLDTIRSLTIGCSSCSSLMEHFEDTREKNEALLGELFS 180
PDDQELLKGCACAQKQLHFMDQLLDTIRSLTIGCSSCSSLMEHFEDTREKNEALLGELFS
Sbjct: 121 PDDQELLKGCACAQKQLHFMDQLLDTIRSLTIGCSSCSSLMEHFEDTREKNEALLGELFS 180
Query: 181 SPHLQMLLNPECDPWPLDMQPLLNKQSDDWQWASASAKSEEEEKLAELARQLQESAAKLH 240
SPHLQMLLNPECDPWPLDMQPLLNKQSDDWQWASASAKSEEEEKLAELARQLQESAAKLH
Sbjct: 181 SPHLQMLLNPECDPWPLDMQPLLNKQSDDWQWASASAKSEEEEKLAELARQLQESAAKLH 240
Query: 241 ALRTEYFAQHEQGAAAGAADISTLDQKLRLVTSDFHQLILAFLQVYDDELGECCQRPGPD 300
ALRTEYFAQHEQGAAAGAADISTLDQKLRLVTSDFHQLILAFLQVYDDELGECCQRPGPD
Sbjct: 241 ALRTEYFAQHEQGAAAGAADISTLDQKLRLVTSDFHQLILAFLQVYDDELGECCQRPGPD 300
Query: 301 LHPCGPIIQATHQNLTSYSQIPRGQPKKPALVTMTTVPTCATLPLAQGFRDVHFGFLSER 360
LHPCGPIIQATH
Sbjct: 301 LHPCGPIIQATH------------------------------------------------ 312
Query: 361 LRAFQPLTGWSCETPRSGMLLQVVMAVADTSAKAVETVKKQQGEQICWGGSSSVMSLATK 420
Q LT +S LLQVVMAVADTSAKAVETVKKQQGEQICWGGSSSVMSLATK
Sbjct: 313 ----QNLTSYS-------QLLQVVMAVADTSAKAVETVKKQQGEQICWGGSSSVMSLATK 361
Query: 421 MNELMEK 427
MNELMEK
Sbjct: 362 MNELMEK 368
>gi|121582655 ankyrin repeat domain 35 [Homo sapiens]
Length = 1001
Score = 35.4 bits (80), Expect = 0.100
Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 2/111 (1%)
Query: 168 REKNEALLGELFSSPHLQMLLNPECDPWPLDMQPLLNKQSDDWQ--WASASAKSEEEEKL 225
+E+N+ L G L L P ++ L K ++ + A+ S KS+E KL
Sbjct: 751 QEENQQLRGSLSPCREPGTSLKAPASPQVAALEQDLGKLEEELRAVQATMSGKSQEIGKL 810
Query: 226 AELARQLQESAAKLHALRTEYFAQHEQGAAAGAADISTLDQKLRLVTSDFH 276
+L Q E A+L A QHE+ + A Q+L+ + ++
Sbjct: 811 KQLLYQATEEVAELRAREAASLRQHEKTRGSLVAQAQAWGQELKALLEKYN 861
>gi|139394604 bromo adjacent homology domain containing 1 [Homo
sapiens]
Length = 780
Score = 34.3 bits (77), Expect = 0.22
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 293 CCQRPGPDLHPCGPIIQATHQNLTSYSQIPRG-QPKKPALV 332
C P P PCGP +Q +HQ L+ + P G +P P L+
Sbjct: 278 CPDEPWPSATPCGPSVQPSHQPLSKALESPLGLRPHLPLLM 318
>gi|31543179 hypothetical protein LOC78995 [Homo sapiens]
Length = 647
Score = 33.9 bits (76), Expect = 0.29
Identities = 45/185 (24%), Positives = 73/185 (39%), Gaps = 29/185 (15%)
Query: 187 LLNPECDPWPLDMQPLLNKQSDDWQWASASAKSEEEEKLAELARQLQESAAKLHALRTEY 246
+L P + PLL +S Q ++E + +L+E +L
Sbjct: 122 VLRETARPQSSALHPLLTFESQQQQVGGFEGPEQDEFDKVLASMELEEPGMEL------- 174
Query: 247 FAQHEQGAAAGAADISTLDQKLRLVTSDFHQLILAFLQVYDDELGECCQRPGPDLHPCGP 306
E G ++ A I Q+ V + +++ D G C + P P +H G
Sbjct: 175 ----ECGVSSEAIPILPAQQREGSVLAKKARVV--------DLSGSCQKGPVPAIHKAG- 221
Query: 307 IIQATHQNLTSYSQI--PRGQPKKPALVTMTTVPTCATLPLAQGFRDVHFGFLSER--LR 362
I+ A ++L Q PR P +P V VPT T+P Q +H+ +R ++
Sbjct: 222 IMSAQDESLDPVIQCRTPR-PPLRPGAVGHLPVPTALTVPTQQ----LHWEVCPQRSPVQ 276
Query: 363 AFQPL 367
A QPL
Sbjct: 277 ALQPL 281
>gi|23308715 SRY (sex determining region Y)-box 5 isoform b [Homo
sapiens]
Length = 750
Score = 32.3 bits (72), Expect = 0.84
Identities = 34/133 (25%), Positives = 55/133 (41%), Gaps = 8/133 (6%)
Query: 153 GCSSCSSLMEHFEDTREKNEALLGELFSS---PHLQMLLNPECDPWPLDMQPLLNKQSDD 209
G S SL T E+ + L ++ + ++ L+ E + P ++ LL+K D
Sbjct: 104 GRQSGESLSSTALGTPERRKGSLADVVDTLKQRKMEELIKNEPEETP-SIEKLLSKDWKD 162
Query: 210 WQWASASAKSEE----EEKLAELARQLQESAAKLHALRTEYFAQHEQGAAAGAADISTLD 265
A S E E LAE RQL +L +LR + A H++ A+ I
Sbjct: 163 KLLAMGSGNFGEIKGTPESLAEKERQLMGMINQLTSLREQLLAAHDEQKKLAASQIEKQR 222
Query: 266 QKLRLVTSDFHQL 278
Q++ L Q+
Sbjct: 223 QQMELAKQQQEQI 235
>gi|23308713 SRY (sex determining region Y)-box 5 isoform a [Homo
sapiens]
Length = 763
Score = 32.3 bits (72), Expect = 0.84
Identities = 34/133 (25%), Positives = 55/133 (41%), Gaps = 8/133 (6%)
Query: 153 GCSSCSSLMEHFEDTREKNEALLGELFSS---PHLQMLLNPECDPWPLDMQPLLNKQSDD 209
G S SL T E+ + L ++ + ++ L+ E + P ++ LL+K D
Sbjct: 117 GRQSGESLSSTALGTPERRKGSLADVVDTLKQRKMEELIKNEPEETP-SIEKLLSKDWKD 175
Query: 210 WQWASASAKSEE----EEKLAELARQLQESAAKLHALRTEYFAQHEQGAAAGAADISTLD 265
A S E E LAE RQL +L +LR + A H++ A+ I
Sbjct: 176 KLLAMGSGNFGEIKGTPESLAEKERQLMGMINQLTSLREQLLAAHDEQKKLAASQIEKQR 235
Query: 266 QKLRLVTSDFHQL 278
Q++ L Q+
Sbjct: 236 QQMELAKQQQEQI 248
>gi|148596984 golgi autoantigen, golgin subfamily b, macrogolgin (with
transmembrane signal), 1 [Homo sapiens]
Length = 3259
Score = 32.3 bits (72), Expect = 0.84
Identities = 55/249 (22%), Positives = 96/249 (38%), Gaps = 44/249 (17%)
Query: 23 DDYSE-DEGDSSVSRAAVEVFGKLKDLNCPFLEGLYITEPKTIQELLCSPS--------- 72
DDY+ E S+ + +L+ L E + P T Q+ CS +
Sbjct: 1210 DDYNRLQEQFDEQSKENENIGDQLRQLQIQVRESIDGKLPSTDQQESCSSTPGLEEPLFK 1269
Query: 73 ----EYRLEILEWMCTRVWPSLQDRFSSLKG------VPTEVKIQEMTKLGHELMLCAPD 122
+ +LE WPS + S+L+G + ++K E K+ EL + +
Sbjct: 1270 ATEQHHTQPVLESNLCPDWPSHSEDASALQGGTSVAQIKAQLKEIEAEKVELELKVSSTT 1329
Query: 123 DQELLKGCACAQKQLHFMDQLLDTIRSLTIGCSSCSSLMEHFEDTREKNEALLGELFSSP 182
+ K Q Q Q L+ T+ + H E ++K E+ ++
Sbjct: 1330 SELTKKSEEVFQLQEQINKQGLEIESLKTVSHEA----EVHAESLQQKLESSQLQIAGLE 1385
Query: 183 HLQMLLNPECDPWPLDMQPLLNKQSDDWQWASASAKSEEEEKLAELARQLQESAAKLHAL 242
HL+ L P+ D ++Q L++K+ EE ++ L+ QL E A L +
Sbjct: 1386 HLREL-QPKLD----ELQKLISKK---------------EEDVSYLSGQLSEKEAALTKI 1425
Query: 243 RTEYFAQHE 251
+TE Q +
Sbjct: 1426 QTEIIEQED 1434
>gi|44680122 tripartite motif-containing 7 isoform 1 [Homo sapiens]
Length = 511
Score = 32.3 bits (72), Expect = 0.84
Identities = 25/116 (21%), Positives = 46/116 (39%), Gaps = 18/116 (15%)
Query: 202 LLNKQSDDWQWASASAKSEEEEKLAELARQLQESAAKLHALRT----------------- 244
+L K+ +D + ++ K E +E L ++A + ++ A+ ALR
Sbjct: 183 VLKKELEDCEVFRSTEKKESKELLKQMAAEQEKVGAEFQALRAFLVEQEGRLLGRLEELS 242
Query: 245 -EYFAQHEQGAAAGAADISTLDQKLRLVTSDFHQLILAFLQVYDDELGECCQRPGP 299
E + + A +I+ L + + + L FLQ + L C PGP
Sbjct: 243 REVAQKQNENLAQLGVEITQLSKLSSQIQETAQKPDLDFLQEFKSTLSRCSNVPGP 298
>gi|157419126 laminin, alpha 4 isoform 2 precursor [Homo sapiens]
Length = 1816
Score = 32.0 bits (71), Expect = 1.1
Identities = 40/200 (20%), Positives = 88/200 (44%), Gaps = 20/200 (10%)
Query: 94 FSSLKGVPTE--VKIQEMTKLGHELMLCAPDD-QELLKGCACAQKQLHFMDQLLDTIRSL 150
++ + G +E VK+ ++ L H+L+ A D Q+L + ++LH D + ++
Sbjct: 555 YAEIDGAKSELQVKLSNLSNLSHDLVQEAIDHAQDLQQEANELSRKLHSSD-MNGLVQKA 613
Query: 151 TIGCSSCSSLMEHFEDTREKNEALLG------ELFSSPHLQMLLNPECDPWPLDMQPLLN 204
+ +++ + + E E L + S Q++ + + + + LLN
Sbjct: 614 LDASNVYENIVNYVSEANETAEFALNTTDRIYDAVSGIDTQIIYHKD------ESENLLN 667
Query: 205 KQSDDWQWASASAKSEEEEKLAELARQLQESAAKLHALRTEYFAQHEQGAAAGAADISTL 264
+ + A A+S +E +A+ +R++ + A+ AL+T +Q AA D
Sbjct: 668 QARE----LQAKAESSSDEAVADTSRRVGGALARKSALKTRLSDAVKQLQAAERGDAQQR 723
Query: 265 DQKLRLVTSDFHQLILAFLQ 284
+ RL+T + ++ + Q
Sbjct: 724 LGQSRLITEEANRTTMEVQQ 743
>gi|157419124 laminin, alpha 4 isoform 1 precursor [Homo sapiens]
Length = 1823
Score = 32.0 bits (71), Expect = 1.1
Identities = 40/200 (20%), Positives = 88/200 (44%), Gaps = 20/200 (10%)
Query: 94 FSSLKGVPTE--VKIQEMTKLGHELMLCAPDD-QELLKGCACAQKQLHFMDQLLDTIRSL 150
++ + G +E VK+ ++ L H+L+ A D Q+L + ++LH D + ++
Sbjct: 562 YAEIDGAKSELQVKLSNLSNLSHDLVQEAIDHAQDLQQEANELSRKLHSSD-MNGLVQKA 620
Query: 151 TIGCSSCSSLMEHFEDTREKNEALLG------ELFSSPHLQMLLNPECDPWPLDMQPLLN 204
+ +++ + + E E L + S Q++ + + + + LLN
Sbjct: 621 LDASNVYENIVNYVSEANETAEFALNTTDRIYDAVSGIDTQIIYHKD------ESENLLN 674
Query: 205 KQSDDWQWASASAKSEEEEKLAELARQLQESAAKLHALRTEYFAQHEQGAAAGAADISTL 264
+ + A A+S +E +A+ +R++ + A+ AL+T +Q AA D
Sbjct: 675 QARE----LQAKAESSSDEAVADTSRRVGGALARKSALKTRLSDAVKQLQAAERGDAQQR 730
Query: 265 DQKLRLVTSDFHQLILAFLQ 284
+ RL+T + ++ + Q
Sbjct: 731 LGQSRLITEEANRTTMEVQQ 750
>gi|157419122 laminin, alpha 4 isoform 2 precursor [Homo sapiens]
Length = 1816
Score = 32.0 bits (71), Expect = 1.1
Identities = 40/200 (20%), Positives = 88/200 (44%), Gaps = 20/200 (10%)
Query: 94 FSSLKGVPTE--VKIQEMTKLGHELMLCAPDD-QELLKGCACAQKQLHFMDQLLDTIRSL 150
++ + G +E VK+ ++ L H+L+ A D Q+L + ++LH D + ++
Sbjct: 555 YAEIDGAKSELQVKLSNLSNLSHDLVQEAIDHAQDLQQEANELSRKLHSSD-MNGLVQKA 613
Query: 151 TIGCSSCSSLMEHFEDTREKNEALLG------ELFSSPHLQMLLNPECDPWPLDMQPLLN 204
+ +++ + + E E L + S Q++ + + + + LLN
Sbjct: 614 LDASNVYENIVNYVSEANETAEFALNTTDRIYDAVSGIDTQIIYHKD------ESENLLN 667
Query: 205 KQSDDWQWASASAKSEEEEKLAELARQLQESAAKLHALRTEYFAQHEQGAAAGAADISTL 264
+ + A A+S +E +A+ +R++ + A+ AL+T +Q AA D
Sbjct: 668 QARE----LQAKAESSSDEAVADTSRRVGGALARKSALKTRLSDAVKQLQAAERGDAQQR 723
Query: 265 DQKLRLVTSDFHQLILAFLQ 284
+ RL+T + ++ + Q
Sbjct: 724 LGQSRLITEEANRTTMEVQQ 743
>gi|229577185 epidermal growth factor receptor pathway substrate 15
isoform B [Homo sapiens]
Length = 582
Score = 31.6 bits (70), Expect = 1.4
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 165 EDTREKNEALLGELFSSPHLQMLLNPECDPWPLDMQPLLNKQSDDWQWASASAKSEEEEK 224
+ +EK+ + + F+S N E DP + D +WA ++ EEE++
Sbjct: 499 DSPKEKDPEIFCDPFTSA--TTTTNKEADPSNFANFSAYPSEEDMIEWAKRESEREEEQR 556
Query: 225 LAELARQLQE 234
LA L +Q QE
Sbjct: 557 LARLNQQEQE 566
>gi|4503593 epidermal growth factor receptor pathway substrate 15
isoform A [Homo sapiens]
Length = 896
Score = 31.6 bits (70), Expect = 1.4
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 165 EDTREKNEALLGELFSSPHLQMLLNPECDPWPLDMQPLLNKQSDDWQWASASAKSEEEEK 224
+ +EK+ + + F+S N E DP + D +WA ++ EEE++
Sbjct: 813 DSPKEKDPEIFCDPFTSA--TTTTNKEADPSNFANFSAYPSEEDMIEWAKRESEREEEQR 870
Query: 225 LAELARQLQE 234
LA L +Q QE
Sbjct: 871 LARLNQQEQE 880
>gi|156631005 proteasome 26S non-ATPase subunit 8 [Homo sapiens]
Length = 350
Score = 31.6 bits (70), Expect = 1.4
Identities = 21/57 (36%), Positives = 27/57 (47%)
Query: 98 KGVPTEVKIQEMTKLGHELMLCAPDDQELLKGCACAQKQLHFMDQLLDTIRSLTIGC 154
K + T V I+ L LM + + L KG A+ F+D LLDTIR GC
Sbjct: 218 KDIQTNVYIKHPVSLEQYLMEGSYNKVFLAKGNIPAESYTFFIDILLDTIRDEIAGC 274
>gi|55953112 ret finger protein 2 isoform 2 [Homo sapiens]
Length = 410
Score = 31.6 bits (70), Expect = 1.4
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 263 TLDQKLRLVTSDFHQLILAFLQVYDDELGE 292
TLDQK + SDF + LA +Q YD E+ +
Sbjct: 195 TLDQKKNEILSDFETMKLAVMQAYDPEINK 224
>gi|47132524 ret finger protein 2 isoform 1 [Homo sapiens]
Length = 407
Score = 31.6 bits (70), Expect = 1.4
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 263 TLDQKLRLVTSDFHQLILAFLQVYDDELGE 292
TLDQK + SDF + LA +Q YD E+ +
Sbjct: 192 TLDQKKNEILSDFETMKLAVMQAYDPEINK 221
>gi|16445412 ret finger protein 2 isoform 1 [Homo sapiens]
Length = 407
Score = 31.6 bits (70), Expect = 1.4
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 263 TLDQKLRLVTSDFHQLILAFLQVYDDELGE 292
TLDQK + SDF + LA +Q YD E+ +
Sbjct: 192 TLDQKKNEILSDFETMKLAVMQAYDPEINK 221
>gi|47132521 ret finger protein 2 isoform 1 [Homo sapiens]
Length = 407
Score = 31.6 bits (70), Expect = 1.4
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 263 TLDQKLRLVTSDFHQLILAFLQVYDDELGE 292
TLDQK + SDF + LA +Q YD E+ +
Sbjct: 192 TLDQKKNEILSDFETMKLAVMQAYDPEINK 221
>gi|5032281 dystrophin Dp427c isoform [Homo sapiens]
Length = 3677
Score = 30.8 bits (68), Expect = 2.5
Identities = 51/232 (21%), Positives = 83/232 (35%), Gaps = 48/232 (20%)
Query: 61 PKTIQELLCSPSEYRLEILEWMCTRVWPSLQDRFSSLKGVPTEVKIQEMTKLGHELMLCA 120
P QE L E +W+CTR + K E+ C
Sbjct: 1221 PPVAQEALKKELETLTTNYQWLCTR--------------------LNGKCKTLEEVWACW 1260
Query: 121 PDDQELLKGCACAQKQLHFMDQLLDTIRSLTIGC-------SSCSSLMEHFEDTREKNEA 173
ELL A K L+ ++ L T ++ G S +LM H ED +
Sbjct: 1261 ---HELLSYLEKANKWLNEVEFKLKTTENIPGGAEEISEVLDSLENLMRHSEDNPNQIRI 1317
Query: 174 LLGELFSSPHLQMLLNPECDPWPLDMQPLLNKQSDDWQWASASAKSEEEEKLAELARQ-L 232
L L + L+N E + + + +W ++ +KL E + Q
Sbjct: 1318 LAQTLTDGGVMDELINEELETF-------------NSRWRELHEEAVRRQKLLEQSIQSA 1364
Query: 233 QESAAKLHALRTEYFAQHEQGAA--AGAADISTLDQKLRLVTSDF--HQLIL 280
QE+ LH ++ +Q AA A D + + Q+ + + SD H++ L
Sbjct: 1365 QETEKSLHLIQESLTFIDKQLAAYIADKVDAAQMPQEAQKIQSDLTSHEISL 1416
Score = 30.8 bits (68), Expect = 2.5
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 203 LNKQSDDWQWASASA-KSEEEEKLAELARQLQESAAKLHALRTEYFAQHEQGAAAGAADI 261
L K DD + AS + +E K+ E+ R+LQ+ +L+A+R + E GAA
Sbjct: 1881 LLKCLDDIEKKLASLPEPRDERKIKEIDRELQKKKEELNAVRRQAEGLSEDGAAMAVEPT 1940
Query: 262 S-TLDQKLRLVTSDFHQL-ILAFLQVY 286
L ++ R + S F Q L F Q++
Sbjct: 1941 QIQLSKRWREIESKFAQFRRLNFAQIH 1967
>gi|5032291 dystrophin Dp260-2 isoform [Homo sapiens]
Length = 2341
Score = 30.8 bits (68), Expect = 2.5
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 203 LNKQSDDWQWASASA-KSEEEEKLAELARQLQESAAKLHALRTEYFAQHEQGAAAGAADI 261
L K DD + AS + +E K+ E+ R+LQ+ +L+A+R + E GAA
Sbjct: 545 LLKCLDDIEKKLASLPEPRDERKIKEIDRELQKKKEELNAVRRQAEGLSEDGAAMAVEPT 604
Query: 262 S-TLDQKLRLVTSDFHQL-ILAFLQVY 286
L ++ R + S F Q L F Q++
Sbjct: 605 QIQLSKRWREIESKFAQFRRLNFAQIH 631
>gi|150036268 dystrophin Dp260-1 isoform [Homo sapiens]
Length = 2344
Score = 30.8 bits (68), Expect = 2.5
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 203 LNKQSDDWQWASASA-KSEEEEKLAELARQLQESAAKLHALRTEYFAQHEQGAAAGAADI 261
L K DD + AS + +E K+ E+ R+LQ+ +L+A+R + E GAA
Sbjct: 548 LLKCLDDIEKKLASLPEPRDERKIKEIDRELQKKKEELNAVRRQAEGLSEDGAAMAVEPT 607
Query: 262 S-TLDQKLRLVTSDFHQL-ILAFLQVY 286
L ++ R + S F Q L F Q++
Sbjct: 608 QIQLSKRWREIESKFAQFRRLNFAQIH 634
>gi|5032315 dystrophin Dp427p2 isoform [Homo sapiens]
Length = 3562
Score = 30.8 bits (68), Expect = 2.5
Identities = 51/232 (21%), Positives = 83/232 (35%), Gaps = 48/232 (20%)
Query: 61 PKTIQELLCSPSEYRLEILEWMCTRVWPSLQDRFSSLKGVPTEVKIQEMTKLGHELMLCA 120
P QE L E +W+CTR + K E+ C
Sbjct: 1106 PPVAQEALKKELETLTTNYQWLCTR--------------------LNGKCKTLEEVWACW 1145
Query: 121 PDDQELLKGCACAQKQLHFMDQLLDTIRSLTIGC-------SSCSSLMEHFEDTREKNEA 173
ELL A K L+ ++ L T ++ G S +LM H ED +
Sbjct: 1146 ---HELLSYLEKANKWLNEVEFKLKTTENIPGGAEEISEVLDSLENLMRHSEDNPNQIRI 1202
Query: 174 LLGELFSSPHLQMLLNPECDPWPLDMQPLLNKQSDDWQWASASAKSEEEEKLAELARQ-L 232
L L + L+N E + + + +W ++ +KL E + Q
Sbjct: 1203 LAQTLTDGGVMDELINEELETF-------------NSRWRELHEEAVRRQKLLEQSIQSA 1249
Query: 233 QESAAKLHALRTEYFAQHEQGAA--AGAADISTLDQKLRLVTSDF--HQLIL 280
QE+ LH ++ +Q AA A D + + Q+ + + SD H++ L
Sbjct: 1250 QETEKSLHLIQESLTFIDKQLAAYIADKVDAAQMPQEAQKIQSDLTSHEISL 1301
Score = 30.8 bits (68), Expect = 2.5
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 203 LNKQSDDWQWASASA-KSEEEEKLAELARQLQESAAKLHALRTEYFAQHEQGAAAGAADI 261
L K DD + AS + +E K+ E+ R+LQ+ +L+A+R + E GAA
Sbjct: 1766 LLKCLDDIEKKLASLPEPRDERKIKEIDRELQKKKEELNAVRRQAEGLSEDGAAMAVEPT 1825
Query: 262 S-TLDQKLRLVTSDFHQL-ILAFLQVY 286
L ++ R + S F Q L F Q++
Sbjct: 1826 QIQLSKRWREIESKFAQFRRLNFAQIH 1852
>gi|5032287 dystrophin Dp427p1 isoform [Homo sapiens]
Length = 3681
Score = 30.8 bits (68), Expect = 2.5
Identities = 51/232 (21%), Positives = 83/232 (35%), Gaps = 48/232 (20%)
Query: 61 PKTIQELLCSPSEYRLEILEWMCTRVWPSLQDRFSSLKGVPTEVKIQEMTKLGHELMLCA 120
P QE L E +W+CTR + K E+ C
Sbjct: 1225 PPVAQEALKKELETLTTNYQWLCTR--------------------LNGKCKTLEEVWACW 1264
Query: 121 PDDQELLKGCACAQKQLHFMDQLLDTIRSLTIGC-------SSCSSLMEHFEDTREKNEA 173
ELL A K L+ ++ L T ++ G S +LM H ED +
Sbjct: 1265 ---HELLSYLEKANKWLNEVEFKLKTTENIPGGAEEISEVLDSLENLMRHSEDNPNQIRI 1321
Query: 174 LLGELFSSPHLQMLLNPECDPWPLDMQPLLNKQSDDWQWASASAKSEEEEKLAELARQ-L 232
L L + L+N E + + + +W ++ +KL E + Q
Sbjct: 1322 LAQTLTDGGVMDELINEELETF-------------NSRWRELHEEAVRRQKLLEQSIQSA 1368
Query: 233 QESAAKLHALRTEYFAQHEQGAA--AGAADISTLDQKLRLVTSDF--HQLIL 280
QE+ LH ++ +Q AA A D + + Q+ + + SD H++ L
Sbjct: 1369 QETEKSLHLIQESLTFIDKQLAAYIADKVDAAQMPQEAQKIQSDLTSHEISL 1420
Score = 30.8 bits (68), Expect = 2.5
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 203 LNKQSDDWQWASASA-KSEEEEKLAELARQLQESAAKLHALRTEYFAQHEQGAAAGAADI 261
L K DD + AS + +E K+ E+ R+LQ+ +L+A+R + E GAA
Sbjct: 1885 LLKCLDDIEKKLASLPEPRDERKIKEIDRELQKKKEELNAVRRQAEGLSEDGAAMAVEPT 1944
Query: 262 S-TLDQKLRLVTSDFHQL-ILAFLQVY 286
L ++ R + S F Q L F Q++
Sbjct: 1945 QIQLSKRWREIESKFAQFRRLNFAQIH 1971
>gi|10337581 type I hair keratin 3B [Homo sapiens]
Length = 404
Score = 30.8 bits (68), Expect = 2.5
Identities = 54/244 (22%), Positives = 95/244 (38%), Gaps = 29/244 (11%)
Query: 48 LNCPFLEGLYITEPKTIQELLCSPSE-YRLEILEWMCTRVWPSLQDRFSSLKGVP--TEV 104
L CP + + T + Q++LCS SE RL + + ++ + + + E
Sbjct: 98 LLCPSYQSYFKTIEELQQKILCSKSENARLVVQIDNAKLAADDFRTKYQTEQSLRQLVES 157
Query: 105 KIQEMTKLGHELMLCAPD---DQELLKGCACAQKQLHFMDQLLDTIR-------SLTIGC 154
I + ++ EL LC D E LK + KQ H +Q ++T+R ++ +
Sbjct: 158 DINSLRRILDELTLCRSDLEAQMESLKEELLSLKQNH--EQEVNTLRCQLGDRLNVEVDA 215
Query: 155 SSCSSLMEHFEDTREKNEALLGELFSSPHLQMLLNPECDPWPLDMQPLLNKQSDDWQWAS 214
+ L + +TR + EAL+ E + W LNKQ +S
Sbjct: 216 APAVDLNQVLNETRNQYEALV----------ETNRREVEQWFATQTEELNKQ----VVSS 261
Query: 215 ASAKSEEEEKLAELARQLQESAAKLHALRTEYFAQHEQGAAAGAADISTLDQKLRLVTSD 274
+ + ++ EL R + +L A ++ + A S L Q L+T+
Sbjct: 262 SEQLQSYQAEIIELRRTVNALEIELQAQHNLRYSLENTLTESEARYSSQLSQVQSLITNV 321
Query: 275 FHQL 278
QL
Sbjct: 322 ESQL 325
>gi|5032285 dystrophin Dp427l isoform [Homo sapiens]
Length = 3562
Score = 30.8 bits (68), Expect = 2.5
Identities = 51/232 (21%), Positives = 83/232 (35%), Gaps = 48/232 (20%)
Query: 61 PKTIQELLCSPSEYRLEILEWMCTRVWPSLQDRFSSLKGVPTEVKIQEMTKLGHELMLCA 120
P QE L E +W+CTR + K E+ C
Sbjct: 1106 PPVAQEALKKELETLTTNYQWLCTR--------------------LNGKCKTLEEVWACW 1145
Query: 121 PDDQELLKGCACAQKQLHFMDQLLDTIRSLTIGC-------SSCSSLMEHFEDTREKNEA 173
ELL A K L+ ++ L T ++ G S +LM H ED +
Sbjct: 1146 ---HELLSYLEKANKWLNEVEFKLKTTENIPGGAEEISEVLDSLENLMRHSEDNPNQIRI 1202
Query: 174 LLGELFSSPHLQMLLNPECDPWPLDMQPLLNKQSDDWQWASASAKSEEEEKLAELARQ-L 232
L L + L+N E + + + +W ++ +KL E + Q
Sbjct: 1203 LAQTLTDGGVMDELINEELETF-------------NSRWRELHEEAVRRQKLLEQSIQSA 1249
Query: 233 QESAAKLHALRTEYFAQHEQGAA--AGAADISTLDQKLRLVTSDF--HQLIL 280
QE+ LH ++ +Q AA A D + + Q+ + + SD H++ L
Sbjct: 1250 QETEKSLHLIQESLTFIDKQLAAYIADKVDAAQMPQEAQKIQSDLTSHEISL 1301
Score = 30.8 bits (68), Expect = 2.5
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 203 LNKQSDDWQWASASA-KSEEEEKLAELARQLQESAAKLHALRTEYFAQHEQGAAAGAADI 261
L K DD + AS + +E K+ E+ R+LQ+ +L+A+R + E GAA
Sbjct: 1766 LLKCLDDIEKKLASLPEPRDERKIKEIDRELQKKKEELNAVRRQAEGLSEDGAAMAVEPT 1825
Query: 262 S-TLDQKLRLVTSDFHQL-ILAFLQVY 286
L ++ R + S F Q L F Q++
Sbjct: 1826 QIQLSKRWREIESKFAQFRRLNFAQIH 1852
>gi|5032283 dystrophin Dp427m isoform [Homo sapiens]
Length = 3685
Score = 30.8 bits (68), Expect = 2.5
Identities = 51/232 (21%), Positives = 83/232 (35%), Gaps = 48/232 (20%)
Query: 61 PKTIQELLCSPSEYRLEILEWMCTRVWPSLQDRFSSLKGVPTEVKIQEMTKLGHELMLCA 120
P QE L E +W+CTR + K E+ C
Sbjct: 1229 PPVAQEALKKELETLTTNYQWLCTR--------------------LNGKCKTLEEVWACW 1268
Query: 121 PDDQELLKGCACAQKQLHFMDQLLDTIRSLTIGC-------SSCSSLMEHFEDTREKNEA 173
ELL A K L+ ++ L T ++ G S +LM H ED +
Sbjct: 1269 ---HELLSYLEKANKWLNEVEFKLKTTENIPGGAEEISEVLDSLENLMRHSEDNPNQIRI 1325
Query: 174 LLGELFSSPHLQMLLNPECDPWPLDMQPLLNKQSDDWQWASASAKSEEEEKLAELARQ-L 232
L L + L+N E + + + +W ++ +KL E + Q
Sbjct: 1326 LAQTLTDGGVMDELINEELETF-------------NSRWRELHEEAVRRQKLLEQSIQSA 1372
Query: 233 QESAAKLHALRTEYFAQHEQGAA--AGAADISTLDQKLRLVTSDF--HQLIL 280
QE+ LH ++ +Q AA A D + + Q+ + + SD H++ L
Sbjct: 1373 QETEKSLHLIQESLTFIDKQLAAYIADKVDAAQMPQEAQKIQSDLTSHEISL 1424
Score = 30.8 bits (68), Expect = 2.5
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 203 LNKQSDDWQWASASA-KSEEEEKLAELARQLQESAAKLHALRTEYFAQHEQGAAAGAADI 261
L K DD + AS + +E K+ E+ R+LQ+ +L+A+R + E GAA
Sbjct: 1889 LLKCLDDIEKKLASLPEPRDERKIKEIDRELQKKKEELNAVRRQAEGLSEDGAAMAVEPT 1948
Query: 262 S-TLDQKLRLVTSDFHQL-ILAFLQVY 286
L ++ R + S F Q L F Q++
Sbjct: 1949 QIQLSKRWREIESKFAQFRRLNFAQIH 1975
>gi|224967054 SRY (sex determining region Y)-box 6 isoform 4 [Homo
sapiens]
Length = 841
Score = 30.4 bits (67), Expect = 3.2
Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 11/88 (12%)
Query: 199 MQPLLNKQSDDWQWASASAKSEE--------EEKLAELARQLQESAAKLHALRTEYFAQH 250
M+ LL+K DW+ + E E LAE RQL +L +LR + A H
Sbjct: 166 MEKLLSK---DWKEKMERLNTSELLGEIKGTPESLAEKERQLSTMITQLISLREQLLAAH 222
Query: 251 EQGAAAGAADISTLDQKLRLVTSDFHQL 278
++ A+ I Q++ L Q+
Sbjct: 223 DEQKKLAASQIEKQRQQMDLARQQQEQI 250
>gi|224967050 SRY (sex determining region Y)-box 6 isoform 3 [Homo
sapiens]
Length = 801
Score = 30.4 bits (67), Expect = 3.2
Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 11/88 (12%)
Query: 199 MQPLLNKQSDDWQWASASAKSEE--------EEKLAELARQLQESAAKLHALRTEYFAQH 250
M+ LL+K DW+ + E E LAE RQL +L +LR + A H
Sbjct: 153 MEKLLSK---DWKEKMERLNTSELLGEIKGTPESLAEKERQLSTMITQLISLREQLLAAH 209
Query: 251 EQGAAAGAADISTLDQKLRLVTSDFHQL 278
++ A+ I Q++ L Q+
Sbjct: 210 DEQKKLAASQIEKQRQQMDLARQQQEQI 237
>gi|70909338 SRY (sex determining region Y)-box 6 isoform 1 [Homo
sapiens]
Length = 804
Score = 30.4 bits (67), Expect = 3.2
Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 11/88 (12%)
Query: 199 MQPLLNKQSDDWQWASASAKSEE--------EEKLAELARQLQESAAKLHALRTEYFAQH 250
M+ LL+K DW+ + E E LAE RQL +L +LR + A H
Sbjct: 156 MEKLLSK---DWKEKMERLNTSELLGEIKGTPESLAEKERQLSTMITQLISLREQLLAAH 212
Query: 251 EQGAAAGAADISTLDQKLRLVTSDFHQL 278
++ A+ I Q++ L Q+
Sbjct: 213 DEQKKLAASQIEKQRQQMDLARQQQEQI 240
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.132 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,682,659
Number of Sequences: 37866
Number of extensions: 753339
Number of successful extensions: 2746
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 2681
Number of HSP's gapped (non-prelim): 98
length of query: 427
length of database: 18,247,518
effective HSP length: 105
effective length of query: 322
effective length of database: 14,271,588
effective search space: 4595451336
effective search space used: 4595451336
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.