Guide to the Human Genome
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Search of human proteins with 47578097

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|47578097 UCH interacting protein 1 isoform b [Homo sapiens]
         (427 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|47578097 UCH interacting protein 1 isoform b [Homo sapiens]        870   0.0  
gi|66346717 UCH interacting protein 1 isoform a [Homo sapiens]        708   0.0  
gi|121582655 ankyrin repeat domain 35 [Homo sapiens]                   35   0.100
gi|139394604 bromo adjacent homology domain containing 1 [Homo s...    34   0.22 
gi|31543179 hypothetical protein LOC78995 [Homo sapiens]               34   0.29 
gi|23308715 SRY (sex determining region Y)-box 5 isoform b [Homo...    32   0.84 
gi|23308713 SRY (sex determining region Y)-box 5 isoform a [Homo...    32   0.84 
gi|148596984 golgi autoantigen, golgin subfamily b, macrogolgin ...    32   0.84 
gi|44680122 tripartite motif-containing 7 isoform 1 [Homo sapiens]     32   0.84 
gi|157419126 laminin, alpha 4 isoform 2 precursor [Homo sapiens]       32   1.1  
gi|157419124 laminin, alpha 4 isoform 1 precursor [Homo sapiens]       32   1.1  
gi|157419122 laminin, alpha 4 isoform 2 precursor [Homo sapiens]       32   1.1  
gi|229577185 epidermal growth factor receptor pathway substrate ...    32   1.4  
gi|4503593 epidermal growth factor receptor pathway substrate 15...    32   1.4  
gi|156631005 proteasome 26S non-ATPase subunit 8 [Homo sapiens]        32   1.4  
gi|55953112 ret finger protein 2 isoform 2 [Homo sapiens]              32   1.4  
gi|47132524 ret finger protein 2 isoform 1 [Homo sapiens]              32   1.4  
gi|16445412 ret finger protein 2 isoform 1 [Homo sapiens]              32   1.4  
gi|47132521 ret finger protein 2 isoform 1 [Homo sapiens]              32   1.4  
gi|5032281 dystrophin Dp427c isoform [Homo sapiens]                    31   2.5  
gi|5032291 dystrophin Dp260-2 isoform [Homo sapiens]                   31   2.5  
gi|150036268 dystrophin Dp260-1 isoform [Homo sapiens]                 31   2.5  
gi|5032315 dystrophin Dp427p2 isoform [Homo sapiens]                   31   2.5  
gi|5032287 dystrophin Dp427p1 isoform [Homo sapiens]                   31   2.5  
gi|10337581 type I hair keratin 3B [Homo sapiens]                      31   2.5  
gi|5032285 dystrophin Dp427l isoform [Homo sapiens]                    31   2.5  
gi|5032283 dystrophin Dp427m isoform [Homo sapiens]                    31   2.5  
gi|224967054 SRY (sex determining region Y)-box 6 isoform 4 [Hom...    30   3.2  
gi|224967050 SRY (sex determining region Y)-box 6 isoform 3 [Hom...    30   3.2  
gi|70909338 SRY (sex determining region Y)-box 6 isoform 1 [Homo...    30   3.2  

>gi|47578097 UCH interacting protein 1 isoform b [Homo sapiens]
          Length = 427

 Score =  870 bits (2249), Expect = 0.0
 Identities = 427/427 (100%), Positives = 427/427 (100%)

Query: 1   MGGARLGARNMAGQDAGCGRGGDDYSEDEGDSSVSRAAVEVFGKLKDLNCPFLEGLYITE 60
           MGGARLGARNMAGQDAGCGRGGDDYSEDEGDSSVSRAAVEVFGKLKDLNCPFLEGLYITE
Sbjct: 1   MGGARLGARNMAGQDAGCGRGGDDYSEDEGDSSVSRAAVEVFGKLKDLNCPFLEGLYITE 60

Query: 61  PKTIQELLCSPSEYRLEILEWMCTRVWPSLQDRFSSLKGVPTEVKIQEMTKLGHELMLCA 120
           PKTIQELLCSPSEYRLEILEWMCTRVWPSLQDRFSSLKGVPTEVKIQEMTKLGHELMLCA
Sbjct: 61  PKTIQELLCSPSEYRLEILEWMCTRVWPSLQDRFSSLKGVPTEVKIQEMTKLGHELMLCA 120

Query: 121 PDDQELLKGCACAQKQLHFMDQLLDTIRSLTIGCSSCSSLMEHFEDTREKNEALLGELFS 180
           PDDQELLKGCACAQKQLHFMDQLLDTIRSLTIGCSSCSSLMEHFEDTREKNEALLGELFS
Sbjct: 121 PDDQELLKGCACAQKQLHFMDQLLDTIRSLTIGCSSCSSLMEHFEDTREKNEALLGELFS 180

Query: 181 SPHLQMLLNPECDPWPLDMQPLLNKQSDDWQWASASAKSEEEEKLAELARQLQESAAKLH 240
           SPHLQMLLNPECDPWPLDMQPLLNKQSDDWQWASASAKSEEEEKLAELARQLQESAAKLH
Sbjct: 181 SPHLQMLLNPECDPWPLDMQPLLNKQSDDWQWASASAKSEEEEKLAELARQLQESAAKLH 240

Query: 241 ALRTEYFAQHEQGAAAGAADISTLDQKLRLVTSDFHQLILAFLQVYDDELGECCQRPGPD 300
           ALRTEYFAQHEQGAAAGAADISTLDQKLRLVTSDFHQLILAFLQVYDDELGECCQRPGPD
Sbjct: 241 ALRTEYFAQHEQGAAAGAADISTLDQKLRLVTSDFHQLILAFLQVYDDELGECCQRPGPD 300

Query: 301 LHPCGPIIQATHQNLTSYSQIPRGQPKKPALVTMTTVPTCATLPLAQGFRDVHFGFLSER 360
           LHPCGPIIQATHQNLTSYSQIPRGQPKKPALVTMTTVPTCATLPLAQGFRDVHFGFLSER
Sbjct: 301 LHPCGPIIQATHQNLTSYSQIPRGQPKKPALVTMTTVPTCATLPLAQGFRDVHFGFLSER 360

Query: 361 LRAFQPLTGWSCETPRSGMLLQVVMAVADTSAKAVETVKKQQGEQICWGGSSSVMSLATK 420
           LRAFQPLTGWSCETPRSGMLLQVVMAVADTSAKAVETVKKQQGEQICWGGSSSVMSLATK
Sbjct: 361 LRAFQPLTGWSCETPRSGMLLQVVMAVADTSAKAVETVKKQQGEQICWGGSSSVMSLATK 420

Query: 421 MNELMEK 427
           MNELMEK
Sbjct: 421 MNELMEK 427


>gi|66346717 UCH interacting protein 1 isoform a [Homo sapiens]
          Length = 368

 Score =  708 bits (1827), Expect = 0.0
 Identities = 364/427 (85%), Positives = 365/427 (85%), Gaps = 59/427 (13%)

Query: 1   MGGARLGARNMAGQDAGCGRGGDDYSEDEGDSSVSRAAVEVFGKLKDLNCPFLEGLYITE 60
           MGGARLGARNMAGQDAGCGRGGDDYSEDEGDSSVSRAAVEVFGKLKDLNCPFLEGLYITE
Sbjct: 1   MGGARLGARNMAGQDAGCGRGGDDYSEDEGDSSVSRAAVEVFGKLKDLNCPFLEGLYITE 60

Query: 61  PKTIQELLCSPSEYRLEILEWMCTRVWPSLQDRFSSLKGVPTEVKIQEMTKLGHELMLCA 120
           PKTIQELLCSPSEYRLEILEWMCTRVWPSLQDRFSSLKGVPTEVKIQEMTKLGHELMLCA
Sbjct: 61  PKTIQELLCSPSEYRLEILEWMCTRVWPSLQDRFSSLKGVPTEVKIQEMTKLGHELMLCA 120

Query: 121 PDDQELLKGCACAQKQLHFMDQLLDTIRSLTIGCSSCSSLMEHFEDTREKNEALLGELFS 180
           PDDQELLKGCACAQKQLHFMDQLLDTIRSLTIGCSSCSSLMEHFEDTREKNEALLGELFS
Sbjct: 121 PDDQELLKGCACAQKQLHFMDQLLDTIRSLTIGCSSCSSLMEHFEDTREKNEALLGELFS 180

Query: 181 SPHLQMLLNPECDPWPLDMQPLLNKQSDDWQWASASAKSEEEEKLAELARQLQESAAKLH 240
           SPHLQMLLNPECDPWPLDMQPLLNKQSDDWQWASASAKSEEEEKLAELARQLQESAAKLH
Sbjct: 181 SPHLQMLLNPECDPWPLDMQPLLNKQSDDWQWASASAKSEEEEKLAELARQLQESAAKLH 240

Query: 241 ALRTEYFAQHEQGAAAGAADISTLDQKLRLVTSDFHQLILAFLQVYDDELGECCQRPGPD 300
           ALRTEYFAQHEQGAAAGAADISTLDQKLRLVTSDFHQLILAFLQVYDDELGECCQRPGPD
Sbjct: 241 ALRTEYFAQHEQGAAAGAADISTLDQKLRLVTSDFHQLILAFLQVYDDELGECCQRPGPD 300

Query: 301 LHPCGPIIQATHQNLTSYSQIPRGQPKKPALVTMTTVPTCATLPLAQGFRDVHFGFLSER 360
           LHPCGPIIQATH                                                
Sbjct: 301 LHPCGPIIQATH------------------------------------------------ 312

Query: 361 LRAFQPLTGWSCETPRSGMLLQVVMAVADTSAKAVETVKKQQGEQICWGGSSSVMSLATK 420
               Q LT +S        LLQVVMAVADTSAKAVETVKKQQGEQICWGGSSSVMSLATK
Sbjct: 313 ----QNLTSYS-------QLLQVVMAVADTSAKAVETVKKQQGEQICWGGSSSVMSLATK 361

Query: 421 MNELMEK 427
           MNELMEK
Sbjct: 362 MNELMEK 368


>gi|121582655 ankyrin repeat domain 35 [Homo sapiens]
          Length = 1001

 Score = 35.4 bits (80), Expect = 0.100
 Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 2/111 (1%)

Query: 168 REKNEALLGELFSSPHLQMLLNPECDPWPLDMQPLLNKQSDDWQ--WASASAKSEEEEKL 225
           +E+N+ L G L         L     P    ++  L K  ++ +   A+ S KS+E  KL
Sbjct: 751 QEENQQLRGSLSPCREPGTSLKAPASPQVAALEQDLGKLEEELRAVQATMSGKSQEIGKL 810

Query: 226 AELARQLQESAAKLHALRTEYFAQHEQGAAAGAADISTLDQKLRLVTSDFH 276
            +L  Q  E  A+L A       QHE+   +  A      Q+L+ +   ++
Sbjct: 811 KQLLYQATEEVAELRAREAASLRQHEKTRGSLVAQAQAWGQELKALLEKYN 861


>gi|139394604 bromo adjacent homology domain containing 1 [Homo
           sapiens]
          Length = 780

 Score = 34.3 bits (77), Expect = 0.22
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 293 CCQRPGPDLHPCGPIIQATHQNLTSYSQIPRG-QPKKPALV 332
           C   P P   PCGP +Q +HQ L+   + P G +P  P L+
Sbjct: 278 CPDEPWPSATPCGPSVQPSHQPLSKALESPLGLRPHLPLLM 318


>gi|31543179 hypothetical protein LOC78995 [Homo sapiens]
          Length = 647

 Score = 33.9 bits (76), Expect = 0.29
 Identities = 45/185 (24%), Positives = 73/185 (39%), Gaps = 29/185 (15%)

Query: 187 LLNPECDPWPLDMQPLLNKQSDDWQWASASAKSEEEEKLAELARQLQESAAKLHALRTEY 246
           +L     P    + PLL  +S   Q        ++E      + +L+E   +L       
Sbjct: 122 VLRETARPQSSALHPLLTFESQQQQVGGFEGPEQDEFDKVLASMELEEPGMEL------- 174

Query: 247 FAQHEQGAAAGAADISTLDQKLRLVTSDFHQLILAFLQVYDDELGECCQRPGPDLHPCGP 306
               E G ++ A  I    Q+   V +   +++        D  G C + P P +H  G 
Sbjct: 175 ----ECGVSSEAIPILPAQQREGSVLAKKARVV--------DLSGSCQKGPVPAIHKAG- 221

Query: 307 IIQATHQNLTSYSQI--PRGQPKKPALVTMTTVPTCATLPLAQGFRDVHFGFLSER--LR 362
           I+ A  ++L    Q   PR  P +P  V    VPT  T+P  Q    +H+    +R  ++
Sbjct: 222 IMSAQDESLDPVIQCRTPR-PPLRPGAVGHLPVPTALTVPTQQ----LHWEVCPQRSPVQ 276

Query: 363 AFQPL 367
           A QPL
Sbjct: 277 ALQPL 281


>gi|23308715 SRY (sex determining region Y)-box 5 isoform b [Homo
           sapiens]
          Length = 750

 Score = 32.3 bits (72), Expect = 0.84
 Identities = 34/133 (25%), Positives = 55/133 (41%), Gaps = 8/133 (6%)

Query: 153 GCSSCSSLMEHFEDTREKNEALLGELFSS---PHLQMLLNPECDPWPLDMQPLLNKQSDD 209
           G  S  SL      T E+ +  L ++  +     ++ L+  E +  P  ++ LL+K   D
Sbjct: 104 GRQSGESLSSTALGTPERRKGSLADVVDTLKQRKMEELIKNEPEETP-SIEKLLSKDWKD 162

Query: 210 WQWASASAKSEE----EEKLAELARQLQESAAKLHALRTEYFAQHEQGAAAGAADISTLD 265
              A  S    E     E LAE  RQL     +L +LR +  A H++     A+ I    
Sbjct: 163 KLLAMGSGNFGEIKGTPESLAEKERQLMGMINQLTSLREQLLAAHDEQKKLAASQIEKQR 222

Query: 266 QKLRLVTSDFHQL 278
           Q++ L      Q+
Sbjct: 223 QQMELAKQQQEQI 235


>gi|23308713 SRY (sex determining region Y)-box 5 isoform a [Homo
           sapiens]
          Length = 763

 Score = 32.3 bits (72), Expect = 0.84
 Identities = 34/133 (25%), Positives = 55/133 (41%), Gaps = 8/133 (6%)

Query: 153 GCSSCSSLMEHFEDTREKNEALLGELFSS---PHLQMLLNPECDPWPLDMQPLLNKQSDD 209
           G  S  SL      T E+ +  L ++  +     ++ L+  E +  P  ++ LL+K   D
Sbjct: 117 GRQSGESLSSTALGTPERRKGSLADVVDTLKQRKMEELIKNEPEETP-SIEKLLSKDWKD 175

Query: 210 WQWASASAKSEE----EEKLAELARQLQESAAKLHALRTEYFAQHEQGAAAGAADISTLD 265
              A  S    E     E LAE  RQL     +L +LR +  A H++     A+ I    
Sbjct: 176 KLLAMGSGNFGEIKGTPESLAEKERQLMGMINQLTSLREQLLAAHDEQKKLAASQIEKQR 235

Query: 266 QKLRLVTSDFHQL 278
           Q++ L      Q+
Sbjct: 236 QQMELAKQQQEQI 248


>gi|148596984 golgi autoantigen, golgin subfamily b, macrogolgin (with
            transmembrane signal), 1 [Homo sapiens]
          Length = 3259

 Score = 32.3 bits (72), Expect = 0.84
 Identities = 55/249 (22%), Positives = 96/249 (38%), Gaps = 44/249 (17%)

Query: 23   DDYSE-DEGDSSVSRAAVEVFGKLKDLNCPFLEGLYITEPKTIQELLCSPS--------- 72
            DDY+   E     S+    +  +L+ L     E +    P T Q+  CS +         
Sbjct: 1210 DDYNRLQEQFDEQSKENENIGDQLRQLQIQVRESIDGKLPSTDQQESCSSTPGLEEPLFK 1269

Query: 73   ----EYRLEILEWMCTRVWPSLQDRFSSLKG------VPTEVKIQEMTKLGHELMLCAPD 122
                 +   +LE      WPS  +  S+L+G      +  ++K  E  K+  EL + +  
Sbjct: 1270 ATEQHHTQPVLESNLCPDWPSHSEDASALQGGTSVAQIKAQLKEIEAEKVELELKVSSTT 1329

Query: 123  DQELLKGCACAQKQLHFMDQLLDTIRSLTIGCSSCSSLMEHFEDTREKNEALLGELFSSP 182
             +   K     Q Q     Q L+     T+   +      H E  ++K E+   ++    
Sbjct: 1330 SELTKKSEEVFQLQEQINKQGLEIESLKTVSHEA----EVHAESLQQKLESSQLQIAGLE 1385

Query: 183  HLQMLLNPECDPWPLDMQPLLNKQSDDWQWASASAKSEEEEKLAELARQLQESAAKLHAL 242
            HL+ L  P+ D    ++Q L++K+               EE ++ L+ QL E  A L  +
Sbjct: 1386 HLREL-QPKLD----ELQKLISKK---------------EEDVSYLSGQLSEKEAALTKI 1425

Query: 243  RTEYFAQHE 251
            +TE   Q +
Sbjct: 1426 QTEIIEQED 1434


>gi|44680122 tripartite motif-containing 7 isoform 1 [Homo sapiens]
          Length = 511

 Score = 32.3 bits (72), Expect = 0.84
 Identities = 25/116 (21%), Positives = 46/116 (39%), Gaps = 18/116 (15%)

Query: 202 LLNKQSDDWQWASASAKSEEEEKLAELARQLQESAAKLHALRT----------------- 244
           +L K+ +D +   ++ K E +E L ++A + ++  A+  ALR                  
Sbjct: 183 VLKKELEDCEVFRSTEKKESKELLKQMAAEQEKVGAEFQALRAFLVEQEGRLLGRLEELS 242

Query: 245 -EYFAQHEQGAAAGAADISTLDQKLRLVTSDFHQLILAFLQVYDDELGECCQRPGP 299
            E   +  +  A    +I+ L +    +     +  L FLQ +   L  C   PGP
Sbjct: 243 REVAQKQNENLAQLGVEITQLSKLSSQIQETAQKPDLDFLQEFKSTLSRCSNVPGP 298


>gi|157419126 laminin, alpha 4 isoform 2 precursor [Homo sapiens]
          Length = 1816

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 40/200 (20%), Positives = 88/200 (44%), Gaps = 20/200 (10%)

Query: 94  FSSLKGVPTE--VKIQEMTKLGHELMLCAPDD-QELLKGCACAQKQLHFMDQLLDTIRSL 150
           ++ + G  +E  VK+  ++ L H+L+  A D  Q+L +      ++LH  D +   ++  
Sbjct: 555 YAEIDGAKSELQVKLSNLSNLSHDLVQEAIDHAQDLQQEANELSRKLHSSD-MNGLVQKA 613

Query: 151 TIGCSSCSSLMEHFEDTREKNEALLG------ELFSSPHLQMLLNPECDPWPLDMQPLLN 204
               +   +++ +  +  E  E  L       +  S    Q++ + +      + + LLN
Sbjct: 614 LDASNVYENIVNYVSEANETAEFALNTTDRIYDAVSGIDTQIIYHKD------ESENLLN 667

Query: 205 KQSDDWQWASASAKSEEEEKLAELARQLQESAAKLHALRTEYFAQHEQGAAAGAADISTL 264
           +  +      A A+S  +E +A+ +R++  + A+  AL+T      +Q  AA   D    
Sbjct: 668 QARE----LQAKAESSSDEAVADTSRRVGGALARKSALKTRLSDAVKQLQAAERGDAQQR 723

Query: 265 DQKLRLVTSDFHQLILAFLQ 284
             + RL+T + ++  +   Q
Sbjct: 724 LGQSRLITEEANRTTMEVQQ 743


>gi|157419124 laminin, alpha 4 isoform 1 precursor [Homo sapiens]
          Length = 1823

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 40/200 (20%), Positives = 88/200 (44%), Gaps = 20/200 (10%)

Query: 94  FSSLKGVPTE--VKIQEMTKLGHELMLCAPDD-QELLKGCACAQKQLHFMDQLLDTIRSL 150
           ++ + G  +E  VK+  ++ L H+L+  A D  Q+L +      ++LH  D +   ++  
Sbjct: 562 YAEIDGAKSELQVKLSNLSNLSHDLVQEAIDHAQDLQQEANELSRKLHSSD-MNGLVQKA 620

Query: 151 TIGCSSCSSLMEHFEDTREKNEALLG------ELFSSPHLQMLLNPECDPWPLDMQPLLN 204
               +   +++ +  +  E  E  L       +  S    Q++ + +      + + LLN
Sbjct: 621 LDASNVYENIVNYVSEANETAEFALNTTDRIYDAVSGIDTQIIYHKD------ESENLLN 674

Query: 205 KQSDDWQWASASAKSEEEEKLAELARQLQESAAKLHALRTEYFAQHEQGAAAGAADISTL 264
           +  +      A A+S  +E +A+ +R++  + A+  AL+T      +Q  AA   D    
Sbjct: 675 QARE----LQAKAESSSDEAVADTSRRVGGALARKSALKTRLSDAVKQLQAAERGDAQQR 730

Query: 265 DQKLRLVTSDFHQLILAFLQ 284
             + RL+T + ++  +   Q
Sbjct: 731 LGQSRLITEEANRTTMEVQQ 750


>gi|157419122 laminin, alpha 4 isoform 2 precursor [Homo sapiens]
          Length = 1816

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 40/200 (20%), Positives = 88/200 (44%), Gaps = 20/200 (10%)

Query: 94  FSSLKGVPTE--VKIQEMTKLGHELMLCAPDD-QELLKGCACAQKQLHFMDQLLDTIRSL 150
           ++ + G  +E  VK+  ++ L H+L+  A D  Q+L +      ++LH  D +   ++  
Sbjct: 555 YAEIDGAKSELQVKLSNLSNLSHDLVQEAIDHAQDLQQEANELSRKLHSSD-MNGLVQKA 613

Query: 151 TIGCSSCSSLMEHFEDTREKNEALLG------ELFSSPHLQMLLNPECDPWPLDMQPLLN 204
               +   +++ +  +  E  E  L       +  S    Q++ + +      + + LLN
Sbjct: 614 LDASNVYENIVNYVSEANETAEFALNTTDRIYDAVSGIDTQIIYHKD------ESENLLN 667

Query: 205 KQSDDWQWASASAKSEEEEKLAELARQLQESAAKLHALRTEYFAQHEQGAAAGAADISTL 264
           +  +      A A+S  +E +A+ +R++  + A+  AL+T      +Q  AA   D    
Sbjct: 668 QARE----LQAKAESSSDEAVADTSRRVGGALARKSALKTRLSDAVKQLQAAERGDAQQR 723

Query: 265 DQKLRLVTSDFHQLILAFLQ 284
             + RL+T + ++  +   Q
Sbjct: 724 LGQSRLITEEANRTTMEVQQ 743


>gi|229577185 epidermal growth factor receptor pathway substrate 15
           isoform B [Homo sapiens]
          Length = 582

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 2/70 (2%)

Query: 165 EDTREKNEALLGELFSSPHLQMLLNPECDPWPLDMQPLLNKQSDDWQWASASAKSEEEEK 224
           +  +EK+  +  + F+S       N E DP           + D  +WA   ++ EEE++
Sbjct: 499 DSPKEKDPEIFCDPFTSA--TTTTNKEADPSNFANFSAYPSEEDMIEWAKRESEREEEQR 556

Query: 225 LAELARQLQE 234
           LA L +Q QE
Sbjct: 557 LARLNQQEQE 566


>gi|4503593 epidermal growth factor receptor pathway substrate 15
           isoform A [Homo sapiens]
          Length = 896

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 2/70 (2%)

Query: 165 EDTREKNEALLGELFSSPHLQMLLNPECDPWPLDMQPLLNKQSDDWQWASASAKSEEEEK 224
           +  +EK+  +  + F+S       N E DP           + D  +WA   ++ EEE++
Sbjct: 813 DSPKEKDPEIFCDPFTSA--TTTTNKEADPSNFANFSAYPSEEDMIEWAKRESEREEEQR 870

Query: 225 LAELARQLQE 234
           LA L +Q QE
Sbjct: 871 LARLNQQEQE 880


>gi|156631005 proteasome 26S non-ATPase subunit 8 [Homo sapiens]
          Length = 350

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 21/57 (36%), Positives = 27/57 (47%)

Query: 98  KGVPTEVKIQEMTKLGHELMLCAPDDQELLKGCACAQKQLHFMDQLLDTIRSLTIGC 154
           K + T V I+    L   LM  + +   L KG   A+    F+D LLDTIR    GC
Sbjct: 218 KDIQTNVYIKHPVSLEQYLMEGSYNKVFLAKGNIPAESYTFFIDILLDTIRDEIAGC 274


>gi|55953112 ret finger protein 2 isoform 2 [Homo sapiens]
          Length = 410

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 14/30 (46%), Positives = 19/30 (63%)

Query: 263 TLDQKLRLVTSDFHQLILAFLQVYDDELGE 292
           TLDQK   + SDF  + LA +Q YD E+ +
Sbjct: 195 TLDQKKNEILSDFETMKLAVMQAYDPEINK 224


>gi|47132524 ret finger protein 2 isoform 1 [Homo sapiens]
          Length = 407

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 14/30 (46%), Positives = 19/30 (63%)

Query: 263 TLDQKLRLVTSDFHQLILAFLQVYDDELGE 292
           TLDQK   + SDF  + LA +Q YD E+ +
Sbjct: 192 TLDQKKNEILSDFETMKLAVMQAYDPEINK 221


>gi|16445412 ret finger protein 2 isoform 1 [Homo sapiens]
          Length = 407

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 14/30 (46%), Positives = 19/30 (63%)

Query: 263 TLDQKLRLVTSDFHQLILAFLQVYDDELGE 292
           TLDQK   + SDF  + LA +Q YD E+ +
Sbjct: 192 TLDQKKNEILSDFETMKLAVMQAYDPEINK 221


>gi|47132521 ret finger protein 2 isoform 1 [Homo sapiens]
          Length = 407

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 14/30 (46%), Positives = 19/30 (63%)

Query: 263 TLDQKLRLVTSDFHQLILAFLQVYDDELGE 292
           TLDQK   + SDF  + LA +Q YD E+ +
Sbjct: 192 TLDQKKNEILSDFETMKLAVMQAYDPEINK 221


>gi|5032281 dystrophin Dp427c isoform [Homo sapiens]
          Length = 3677

 Score = 30.8 bits (68), Expect = 2.5
 Identities = 51/232 (21%), Positives = 83/232 (35%), Gaps = 48/232 (20%)

Query: 61   PKTIQELLCSPSEYRLEILEWMCTRVWPSLQDRFSSLKGVPTEVKIQEMTKLGHELMLCA 120
            P   QE L    E      +W+CTR                    +    K   E+  C 
Sbjct: 1221 PPVAQEALKKELETLTTNYQWLCTR--------------------LNGKCKTLEEVWACW 1260

Query: 121  PDDQELLKGCACAQKQLHFMDQLLDTIRSLTIGC-------SSCSSLMEHFEDTREKNEA 173
                ELL     A K L+ ++  L T  ++  G         S  +LM H ED   +   
Sbjct: 1261 ---HELLSYLEKANKWLNEVEFKLKTTENIPGGAEEISEVLDSLENLMRHSEDNPNQIRI 1317

Query: 174  LLGELFSSPHLQMLLNPECDPWPLDMQPLLNKQSDDWQWASASAKSEEEEKLAELARQ-L 232
            L   L     +  L+N E + +             + +W     ++   +KL E + Q  
Sbjct: 1318 LAQTLTDGGVMDELINEELETF-------------NSRWRELHEEAVRRQKLLEQSIQSA 1364

Query: 233  QESAAKLHALRTEYFAQHEQGAA--AGAADISTLDQKLRLVTSDF--HQLIL 280
            QE+   LH ++       +Q AA  A   D + + Q+ + + SD   H++ L
Sbjct: 1365 QETEKSLHLIQESLTFIDKQLAAYIADKVDAAQMPQEAQKIQSDLTSHEISL 1416



 Score = 30.8 bits (68), Expect = 2.5
 Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 3/87 (3%)

Query: 203  LNKQSDDWQWASASA-KSEEEEKLAELARQLQESAAKLHALRTEYFAQHEQGAAAGAADI 261
            L K  DD +   AS  +  +E K+ E+ R+LQ+   +L+A+R +     E GAA      
Sbjct: 1881 LLKCLDDIEKKLASLPEPRDERKIKEIDRELQKKKEELNAVRRQAEGLSEDGAAMAVEPT 1940

Query: 262  S-TLDQKLRLVTSDFHQL-ILAFLQVY 286
               L ++ R + S F Q   L F Q++
Sbjct: 1941 QIQLSKRWREIESKFAQFRRLNFAQIH 1967


>gi|5032291 dystrophin Dp260-2 isoform [Homo sapiens]
          Length = 2341

 Score = 30.8 bits (68), Expect = 2.5
 Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 3/87 (3%)

Query: 203 LNKQSDDWQWASASA-KSEEEEKLAELARQLQESAAKLHALRTEYFAQHEQGAAAGAADI 261
           L K  DD +   AS  +  +E K+ E+ R+LQ+   +L+A+R +     E GAA      
Sbjct: 545 LLKCLDDIEKKLASLPEPRDERKIKEIDRELQKKKEELNAVRRQAEGLSEDGAAMAVEPT 604

Query: 262 S-TLDQKLRLVTSDFHQL-ILAFLQVY 286
              L ++ R + S F Q   L F Q++
Sbjct: 605 QIQLSKRWREIESKFAQFRRLNFAQIH 631


>gi|150036268 dystrophin Dp260-1 isoform [Homo sapiens]
          Length = 2344

 Score = 30.8 bits (68), Expect = 2.5
 Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 3/87 (3%)

Query: 203 LNKQSDDWQWASASA-KSEEEEKLAELARQLQESAAKLHALRTEYFAQHEQGAAAGAADI 261
           L K  DD +   AS  +  +E K+ E+ R+LQ+   +L+A+R +     E GAA      
Sbjct: 548 LLKCLDDIEKKLASLPEPRDERKIKEIDRELQKKKEELNAVRRQAEGLSEDGAAMAVEPT 607

Query: 262 S-TLDQKLRLVTSDFHQL-ILAFLQVY 286
              L ++ R + S F Q   L F Q++
Sbjct: 608 QIQLSKRWREIESKFAQFRRLNFAQIH 634


>gi|5032315 dystrophin Dp427p2 isoform [Homo sapiens]
          Length = 3562

 Score = 30.8 bits (68), Expect = 2.5
 Identities = 51/232 (21%), Positives = 83/232 (35%), Gaps = 48/232 (20%)

Query: 61   PKTIQELLCSPSEYRLEILEWMCTRVWPSLQDRFSSLKGVPTEVKIQEMTKLGHELMLCA 120
            P   QE L    E      +W+CTR                    +    K   E+  C 
Sbjct: 1106 PPVAQEALKKELETLTTNYQWLCTR--------------------LNGKCKTLEEVWACW 1145

Query: 121  PDDQELLKGCACAQKQLHFMDQLLDTIRSLTIGC-------SSCSSLMEHFEDTREKNEA 173
                ELL     A K L+ ++  L T  ++  G         S  +LM H ED   +   
Sbjct: 1146 ---HELLSYLEKANKWLNEVEFKLKTTENIPGGAEEISEVLDSLENLMRHSEDNPNQIRI 1202

Query: 174  LLGELFSSPHLQMLLNPECDPWPLDMQPLLNKQSDDWQWASASAKSEEEEKLAELARQ-L 232
            L   L     +  L+N E + +             + +W     ++   +KL E + Q  
Sbjct: 1203 LAQTLTDGGVMDELINEELETF-------------NSRWRELHEEAVRRQKLLEQSIQSA 1249

Query: 233  QESAAKLHALRTEYFAQHEQGAA--AGAADISTLDQKLRLVTSDF--HQLIL 280
            QE+   LH ++       +Q AA  A   D + + Q+ + + SD   H++ L
Sbjct: 1250 QETEKSLHLIQESLTFIDKQLAAYIADKVDAAQMPQEAQKIQSDLTSHEISL 1301



 Score = 30.8 bits (68), Expect = 2.5
 Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 3/87 (3%)

Query: 203  LNKQSDDWQWASASA-KSEEEEKLAELARQLQESAAKLHALRTEYFAQHEQGAAAGAADI 261
            L K  DD +   AS  +  +E K+ E+ R+LQ+   +L+A+R +     E GAA      
Sbjct: 1766 LLKCLDDIEKKLASLPEPRDERKIKEIDRELQKKKEELNAVRRQAEGLSEDGAAMAVEPT 1825

Query: 262  S-TLDQKLRLVTSDFHQL-ILAFLQVY 286
               L ++ R + S F Q   L F Q++
Sbjct: 1826 QIQLSKRWREIESKFAQFRRLNFAQIH 1852


>gi|5032287 dystrophin Dp427p1 isoform [Homo sapiens]
          Length = 3681

 Score = 30.8 bits (68), Expect = 2.5
 Identities = 51/232 (21%), Positives = 83/232 (35%), Gaps = 48/232 (20%)

Query: 61   PKTIQELLCSPSEYRLEILEWMCTRVWPSLQDRFSSLKGVPTEVKIQEMTKLGHELMLCA 120
            P   QE L    E      +W+CTR                    +    K   E+  C 
Sbjct: 1225 PPVAQEALKKELETLTTNYQWLCTR--------------------LNGKCKTLEEVWACW 1264

Query: 121  PDDQELLKGCACAQKQLHFMDQLLDTIRSLTIGC-------SSCSSLMEHFEDTREKNEA 173
                ELL     A K L+ ++  L T  ++  G         S  +LM H ED   +   
Sbjct: 1265 ---HELLSYLEKANKWLNEVEFKLKTTENIPGGAEEISEVLDSLENLMRHSEDNPNQIRI 1321

Query: 174  LLGELFSSPHLQMLLNPECDPWPLDMQPLLNKQSDDWQWASASAKSEEEEKLAELARQ-L 232
            L   L     +  L+N E + +             + +W     ++   +KL E + Q  
Sbjct: 1322 LAQTLTDGGVMDELINEELETF-------------NSRWRELHEEAVRRQKLLEQSIQSA 1368

Query: 233  QESAAKLHALRTEYFAQHEQGAA--AGAADISTLDQKLRLVTSDF--HQLIL 280
            QE+   LH ++       +Q AA  A   D + + Q+ + + SD   H++ L
Sbjct: 1369 QETEKSLHLIQESLTFIDKQLAAYIADKVDAAQMPQEAQKIQSDLTSHEISL 1420



 Score = 30.8 bits (68), Expect = 2.5
 Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 3/87 (3%)

Query: 203  LNKQSDDWQWASASA-KSEEEEKLAELARQLQESAAKLHALRTEYFAQHEQGAAAGAADI 261
            L K  DD +   AS  +  +E K+ E+ R+LQ+   +L+A+R +     E GAA      
Sbjct: 1885 LLKCLDDIEKKLASLPEPRDERKIKEIDRELQKKKEELNAVRRQAEGLSEDGAAMAVEPT 1944

Query: 262  S-TLDQKLRLVTSDFHQL-ILAFLQVY 286
               L ++ R + S F Q   L F Q++
Sbjct: 1945 QIQLSKRWREIESKFAQFRRLNFAQIH 1971


>gi|10337581 type I hair keratin 3B [Homo sapiens]
          Length = 404

 Score = 30.8 bits (68), Expect = 2.5
 Identities = 54/244 (22%), Positives = 95/244 (38%), Gaps = 29/244 (11%)

Query: 48  LNCPFLEGLYITEPKTIQELLCSPSE-YRLEILEWMCTRVWPSLQDRFSSLKGVP--TEV 104
           L CP  +  + T  +  Q++LCS SE  RL +            + ++ + + +    E 
Sbjct: 98  LLCPSYQSYFKTIEELQQKILCSKSENARLVVQIDNAKLAADDFRTKYQTEQSLRQLVES 157

Query: 105 KIQEMTKLGHELMLCAPD---DQELLKGCACAQKQLHFMDQLLDTIR-------SLTIGC 154
            I  + ++  EL LC  D     E LK    + KQ H  +Q ++T+R       ++ +  
Sbjct: 158 DINSLRRILDELTLCRSDLEAQMESLKEELLSLKQNH--EQEVNTLRCQLGDRLNVEVDA 215

Query: 155 SSCSSLMEHFEDTREKNEALLGELFSSPHLQMLLNPECDPWPLDMQPLLNKQSDDWQWAS 214
           +    L +   +TR + EAL+               E + W       LNKQ      +S
Sbjct: 216 APAVDLNQVLNETRNQYEALV----------ETNRREVEQWFATQTEELNKQ----VVSS 261

Query: 215 ASAKSEEEEKLAELARQLQESAAKLHALRTEYFAQHEQGAAAGAADISTLDQKLRLVTSD 274
           +      + ++ EL R +     +L A     ++       + A   S L Q   L+T+ 
Sbjct: 262 SEQLQSYQAEIIELRRTVNALEIELQAQHNLRYSLENTLTESEARYSSQLSQVQSLITNV 321

Query: 275 FHQL 278
             QL
Sbjct: 322 ESQL 325


>gi|5032285 dystrophin Dp427l isoform [Homo sapiens]
          Length = 3562

 Score = 30.8 bits (68), Expect = 2.5
 Identities = 51/232 (21%), Positives = 83/232 (35%), Gaps = 48/232 (20%)

Query: 61   PKTIQELLCSPSEYRLEILEWMCTRVWPSLQDRFSSLKGVPTEVKIQEMTKLGHELMLCA 120
            P   QE L    E      +W+CTR                    +    K   E+  C 
Sbjct: 1106 PPVAQEALKKELETLTTNYQWLCTR--------------------LNGKCKTLEEVWACW 1145

Query: 121  PDDQELLKGCACAQKQLHFMDQLLDTIRSLTIGC-------SSCSSLMEHFEDTREKNEA 173
                ELL     A K L+ ++  L T  ++  G         S  +LM H ED   +   
Sbjct: 1146 ---HELLSYLEKANKWLNEVEFKLKTTENIPGGAEEISEVLDSLENLMRHSEDNPNQIRI 1202

Query: 174  LLGELFSSPHLQMLLNPECDPWPLDMQPLLNKQSDDWQWASASAKSEEEEKLAELARQ-L 232
            L   L     +  L+N E + +             + +W     ++   +KL E + Q  
Sbjct: 1203 LAQTLTDGGVMDELINEELETF-------------NSRWRELHEEAVRRQKLLEQSIQSA 1249

Query: 233  QESAAKLHALRTEYFAQHEQGAA--AGAADISTLDQKLRLVTSDF--HQLIL 280
            QE+   LH ++       +Q AA  A   D + + Q+ + + SD   H++ L
Sbjct: 1250 QETEKSLHLIQESLTFIDKQLAAYIADKVDAAQMPQEAQKIQSDLTSHEISL 1301



 Score = 30.8 bits (68), Expect = 2.5
 Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 3/87 (3%)

Query: 203  LNKQSDDWQWASASA-KSEEEEKLAELARQLQESAAKLHALRTEYFAQHEQGAAAGAADI 261
            L K  DD +   AS  +  +E K+ E+ R+LQ+   +L+A+R +     E GAA      
Sbjct: 1766 LLKCLDDIEKKLASLPEPRDERKIKEIDRELQKKKEELNAVRRQAEGLSEDGAAMAVEPT 1825

Query: 262  S-TLDQKLRLVTSDFHQL-ILAFLQVY 286
               L ++ R + S F Q   L F Q++
Sbjct: 1826 QIQLSKRWREIESKFAQFRRLNFAQIH 1852


>gi|5032283 dystrophin Dp427m isoform [Homo sapiens]
          Length = 3685

 Score = 30.8 bits (68), Expect = 2.5
 Identities = 51/232 (21%), Positives = 83/232 (35%), Gaps = 48/232 (20%)

Query: 61   PKTIQELLCSPSEYRLEILEWMCTRVWPSLQDRFSSLKGVPTEVKIQEMTKLGHELMLCA 120
            P   QE L    E      +W+CTR                    +    K   E+  C 
Sbjct: 1229 PPVAQEALKKELETLTTNYQWLCTR--------------------LNGKCKTLEEVWACW 1268

Query: 121  PDDQELLKGCACAQKQLHFMDQLLDTIRSLTIGC-------SSCSSLMEHFEDTREKNEA 173
                ELL     A K L+ ++  L T  ++  G         S  +LM H ED   +   
Sbjct: 1269 ---HELLSYLEKANKWLNEVEFKLKTTENIPGGAEEISEVLDSLENLMRHSEDNPNQIRI 1325

Query: 174  LLGELFSSPHLQMLLNPECDPWPLDMQPLLNKQSDDWQWASASAKSEEEEKLAELARQ-L 232
            L   L     +  L+N E + +             + +W     ++   +KL E + Q  
Sbjct: 1326 LAQTLTDGGVMDELINEELETF-------------NSRWRELHEEAVRRQKLLEQSIQSA 1372

Query: 233  QESAAKLHALRTEYFAQHEQGAA--AGAADISTLDQKLRLVTSDF--HQLIL 280
            QE+   LH ++       +Q AA  A   D + + Q+ + + SD   H++ L
Sbjct: 1373 QETEKSLHLIQESLTFIDKQLAAYIADKVDAAQMPQEAQKIQSDLTSHEISL 1424



 Score = 30.8 bits (68), Expect = 2.5
 Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 3/87 (3%)

Query: 203  LNKQSDDWQWASASA-KSEEEEKLAELARQLQESAAKLHALRTEYFAQHEQGAAAGAADI 261
            L K  DD +   AS  +  +E K+ E+ R+LQ+   +L+A+R +     E GAA      
Sbjct: 1889 LLKCLDDIEKKLASLPEPRDERKIKEIDRELQKKKEELNAVRRQAEGLSEDGAAMAVEPT 1948

Query: 262  S-TLDQKLRLVTSDFHQL-ILAFLQVY 286
               L ++ R + S F Q   L F Q++
Sbjct: 1949 QIQLSKRWREIESKFAQFRRLNFAQIH 1975


>gi|224967054 SRY (sex determining region Y)-box 6 isoform 4 [Homo
           sapiens]
          Length = 841

 Score = 30.4 bits (67), Expect = 3.2
 Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 11/88 (12%)

Query: 199 MQPLLNKQSDDWQWASASAKSEE--------EEKLAELARQLQESAAKLHALRTEYFAQH 250
           M+ LL+K   DW+       + E         E LAE  RQL     +L +LR +  A H
Sbjct: 166 MEKLLSK---DWKEKMERLNTSELLGEIKGTPESLAEKERQLSTMITQLISLREQLLAAH 222

Query: 251 EQGAAAGAADISTLDQKLRLVTSDFHQL 278
           ++     A+ I    Q++ L      Q+
Sbjct: 223 DEQKKLAASQIEKQRQQMDLARQQQEQI 250


>gi|224967050 SRY (sex determining region Y)-box 6 isoform 3 [Homo
           sapiens]
          Length = 801

 Score = 30.4 bits (67), Expect = 3.2
 Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 11/88 (12%)

Query: 199 MQPLLNKQSDDWQWASASAKSEE--------EEKLAELARQLQESAAKLHALRTEYFAQH 250
           M+ LL+K   DW+       + E         E LAE  RQL     +L +LR +  A H
Sbjct: 153 MEKLLSK---DWKEKMERLNTSELLGEIKGTPESLAEKERQLSTMITQLISLREQLLAAH 209

Query: 251 EQGAAAGAADISTLDQKLRLVTSDFHQL 278
           ++     A+ I    Q++ L      Q+
Sbjct: 210 DEQKKLAASQIEKQRQQMDLARQQQEQI 237


>gi|70909338 SRY (sex determining region Y)-box 6 isoform 1 [Homo
           sapiens]
          Length = 804

 Score = 30.4 bits (67), Expect = 3.2
 Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 11/88 (12%)

Query: 199 MQPLLNKQSDDWQWASASAKSEE--------EEKLAELARQLQESAAKLHALRTEYFAQH 250
           M+ LL+K   DW+       + E         E LAE  RQL     +L +LR +  A H
Sbjct: 156 MEKLLSK---DWKEKMERLNTSELLGEIKGTPESLAEKERQLSTMITQLISLREQLLAAH 212

Query: 251 EQGAAAGAADISTLDQKLRLVTSDFHQL 278
           ++     A+ I    Q++ L      Q+
Sbjct: 213 DEQKKLAASQIEKQRQQMDLARQQQEQI 240


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.132    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,682,659
Number of Sequences: 37866
Number of extensions: 753339
Number of successful extensions: 2746
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 2681
Number of HSP's gapped (non-prelim): 98
length of query: 427
length of database: 18,247,518
effective HSP length: 105
effective length of query: 322
effective length of database: 14,271,588
effective search space: 4595451336
effective search space used: 4595451336
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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