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Search of human proteins with 4757768
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4757768 Rho GDP dissociation inhibitor (GDI) alpha [Homo
sapiens]
(204 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4757768 Rho GDP dissociation inhibitor (GDI) alpha [Homo sapi... 411 e-115
gi|56676393 Rho GDP dissociation inhibitor (GDI) beta [Homo sapi... 286 8e-78
gi|83313661 Rho GDP dissociation inhibitor (GDI) gamma [Homo sap... 245 2e-65
gi|207113124 dynein, cytoplasmic 1, intermediate chain 1 isoform... 36 0.026
gi|4758178 dynein, cytoplasmic 1, intermediate chain 1 isoform a... 32 0.29
gi|207113122 dynein, cytoplasmic 1, intermediate chain 1 isoform... 32 0.29
gi|197209857 adaptor-related protein complex 3, mu 2 subunit [Ho... 32 0.49
gi|5803000 adaptor-related protein complex 3, mu 2 subunit [Homo... 32 0.49
gi|38045898 RAB6-interacting protein 2 isoform epsilon [Homo sap... 31 0.83
gi|38045896 RAB6-interacting protein 2 isoform delta [Homo sapiens] 31 0.83
gi|228008410 BEN domain containing 4 isoform b [Homo sapiens] 30 1.1
gi|148762950 BEN domain containing 4 isoform a [Homo sapiens] 30 1.1
gi|6912240 adaptor-related protein complex 3, mu 1 subunit [Homo... 30 1.9
gi|46370095 adaptor-related protein complex 3, mu 1 subunit [Hom... 30 1.9
gi|112789532 poliovirus receptor related 2 isoform delta precurs... 29 2.4
gi|4506407 RAN binding protein 1 [Homo sapiens] 29 2.4
gi|156142192 hypothetical protein LOC51306 isoform 3 [Homo sapiens] 29 2.4
gi|156142190 hypothetical protein LOC51306 isoform 2 [Homo sapiens] 29 2.4
gi|156142188 hypothetical protein LOC51306 isoform 1 [Homo sapiens] 29 2.4
gi|119703749 hydrocephalus inducing isoform a [Homo sapiens] 29 2.4
gi|46361983 hydrocephalus inducing isoform b [Homo sapiens] 29 2.4
gi|55769587 probable nucleolar complex protein 14 [Homo sapiens] 29 3.2
gi|5453708 DNA-dependent protein kinase catalytic subunit-intera... 28 5.4
gi|12667788 myosin, heavy polypeptide 9, non-muscle [Homo sapiens] 28 7.1
gi|11967991 SRY-box 17 [Homo sapiens] 28 7.1
gi|40254434 phosphodiesterase 3B [Homo sapiens] 27 9.2
gi|221136785 upstream binding transcription factor, RNA polymera... 27 9.2
gi|37537710 La ribonucleoprotein domain family, member 6 isoform... 27 9.2
>gi|4757768 Rho GDP dissociation inhibitor (GDI) alpha [Homo
sapiens]
Length = 204
Score = 411 bits (1057), Expect = e-115
Identities = 204/204 (100%), Positives = 204/204 (100%)
Query: 1 MAEQEPTAEQLAQIAAENEEDEHSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVA 60
MAEQEPTAEQLAQIAAENEEDEHSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVA
Sbjct: 1 MAEQEPTAEQLAQIAAENEEDEHSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVA 60
Query: 61 VSADPNVPNVVVTGLTLVCSSAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNR 120
VSADPNVPNVVVTGLTLVCSSAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNR
Sbjct: 61 VSADPNVPNVVVTGLTLVCSSAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNR 120
Query: 121 EIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSR 180
EIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSR
Sbjct: 121 EIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSR 180
Query: 181 FTDDDKTDHLSWEWNLTIKKDWKD 204
FTDDDKTDHLSWEWNLTIKKDWKD
Sbjct: 181 FTDDDKTDHLSWEWNLTIKKDWKD 204
>gi|56676393 Rho GDP dissociation inhibitor (GDI) beta [Homo
sapiens]
Length = 201
Score = 286 bits (732), Expect = 8e-78
Identities = 133/188 (70%), Positives = 159/188 (84%)
Query: 17 ENEEDEHSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVAVSADPNVPNVVVTGLT 76
+++E + +NYKPP QKS++E+QE+DKDDESL KYK+ LLG V DP PNVVVT LT
Sbjct: 14 DDDELDSKLNYKPPPQKSLKELQEMDKDDESLIKYKKTLLGDGPVVTDPKAPNVVVTRLT 73
Query: 77 LVCSSAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKG 136
LVC SAPGP+ +DLTGDLE+ KK++ VLKEG EYR+KI F+VNR+IVSG+KY+QHTYR G
Sbjct: 74 LVCESAPGPITMDLTGDLEALKKETIVLKEGSEYRVKIHFKVNRDIVSGLKYVQHTYRTG 133
Query: 137 VKIDKTDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNL 196
VK+DK +MVGSYGPR EEYEFLTPVEEAPKGMLARG+Y KS FTDDDK DHLSWEWNL
Sbjct: 134 VKVDKATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNKSFFTDDDKQDHLSWEWNL 193
Query: 197 TIKKDWKD 204
+IKK+W +
Sbjct: 194 SIKKEWTE 201
>gi|83313661 Rho GDP dissociation inhibitor (GDI) gamma [Homo
sapiens]
Length = 225
Score = 245 bits (625), Expect = 2e-65
Identities = 116/190 (61%), Positives = 145/190 (76%)
Query: 15 AAENEEDEHSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVAVSADPNVPNVVVTG 74
A + DE Y+ P +KS+ EI++LD DD SL KYK LLG + + DP++PNV VT
Sbjct: 36 AVDEVLDEAVPEYRAPGRKSLLEIRQLDPDDRSLAKYKRVLLGPLPPAVDPSLPNVQVTR 95
Query: 75 LTLVCSSAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNREIVSGMKYIQHTYR 134
LTL+ APGP+ +DLTGDL K Q FVLKEGV+YR+KISF+V+REIVSG+K + HTYR
Sbjct: 96 LTLLSEQAPGPVVMDLTGDLAVLKDQVFVLKEGVDYRVKISFKVHREIVSGLKCLHHTYR 155
Query: 135 KGVKIDKTDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEW 194
+G+++DKT YMVGSYGP A+EYEF+TPVEEAP+G L RG Y + S FTDDD+T HLSWEW
Sbjct: 156 RGLRVDKTVYMVGSYGPSAQEYEFVTPVEEAPRGALVRGPYLVVSLFTDDDRTHHLSWEW 215
Query: 195 NLTIKKDWKD 204
L I +DWKD
Sbjct: 216 GLCICQDWKD 225
>gi|207113124 dynein, cytoplasmic 1, intermediate chain 1 isoform c
[Homo sapiens]
Length = 608
Score = 35.8 bits (81), Expect = 0.026
Identities = 38/131 (29%), Positives = 60/131 (45%), Gaps = 7/131 (5%)
Query: 2 AEQEPTAEQLAQIAAENEEDEHSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVAV 61
AE E ++LAQI E + E K + +E + D D + R+ EALL + +
Sbjct: 9 AELERKKQRLAQIREEKKRKEEERKKKEADMQQKKEPVQDDSDLDRKRRETEALLQSIGI 68
Query: 62 SADPNVPNVVVTGLTLVCSSAPGPLELDL--TGDLESFKKQSFVLKEGVEYRIKISFRVN 119
S + P +V T ++ S P E +GDL ++ + K GV ++ F +
Sbjct: 69 SPE---PPLVPTPMSPSSKSVSTPSEAGSQDSGDLGPLTRRR-LHKLGVSKVTQVDF-LP 123
Query: 120 REIVSGMKYIQ 130
RE+VS K Q
Sbjct: 124 REVVSYSKETQ 134
>gi|4758178 dynein, cytoplasmic 1, intermediate chain 1 isoform a
[Homo sapiens]
Length = 645
Score = 32.3 bits (72), Expect = 0.29
Identities = 20/64 (31%), Positives = 31/64 (48%)
Query: 2 AEQEPTAEQLAQIAAENEEDEHSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVAV 61
AE E ++LAQI E + E K + +E + D D + R+ EALL + +
Sbjct: 9 AELERKKQRLAQIREEKKRKEEERKKKEADMQQKKEPVQDDSDLDRKRRETEALLQSIGI 68
Query: 62 SADP 65
S +P
Sbjct: 69 SPEP 72
>gi|207113122 dynein, cytoplasmic 1, intermediate chain 1 isoform
b [Homo sapiens]
Length = 628
Score = 32.3 bits (72), Expect = 0.29
Identities = 20/64 (31%), Positives = 31/64 (48%)
Query: 2 AEQEPTAEQLAQIAAENEEDEHSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVAV 61
AE E ++LAQI E + E K + +E + D D + R+ EALL + +
Sbjct: 9 AELERKKQRLAQIREEKKRKEEERKKKEADMQQKKEPVQDDSDLDRKRRETEALLQSIGI 68
Query: 62 SADP 65
S +P
Sbjct: 69 SPEP 72
>gi|197209857 adaptor-related protein complex 3, mu 2 subunit [Homo
sapiens]
Length = 418
Score = 31.6 bits (70), Expect = 0.49
Identities = 26/102 (25%), Positives = 50/102 (49%), Gaps = 5/102 (4%)
Query: 95 ESFKKQSFVLKEGVEYRIKISFRVNRE-IVSGMKYIQH--TYRKGVKIDKTDYMVGSYGP 151
ES + SF+ +G +R+ +S+ V+ + +V+ Y++H ++R + + + VG
Sbjct: 243 ESERILSFIPPDG-NFRL-LSYHVSAQNLVAIPVYVKHNISFRDSSSLGRFEITVGPKQT 300
Query: 152 RAEEYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSWE 193
+ E +T + PKG+L + T D T LSW+
Sbjct: 301 MGKTIEGVTVTSQMPKGVLNMSLTPSQGTHTFDPVTKMLSWD 342
>gi|5803000 adaptor-related protein complex 3, mu 2 subunit [Homo
sapiens]
Length = 418
Score = 31.6 bits (70), Expect = 0.49
Identities = 26/102 (25%), Positives = 50/102 (49%), Gaps = 5/102 (4%)
Query: 95 ESFKKQSFVLKEGVEYRIKISFRVNRE-IVSGMKYIQH--TYRKGVKIDKTDYMVGSYGP 151
ES + SF+ +G +R+ +S+ V+ + +V+ Y++H ++R + + + VG
Sbjct: 243 ESERILSFIPPDG-NFRL-LSYHVSAQNLVAIPVYVKHNISFRDSSSLGRFEITVGPKQT 300
Query: 152 RAEEYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSWE 193
+ E +T + PKG+L + T D T LSW+
Sbjct: 301 MGKTIEGVTVTSQMPKGVLNMSLTPSQGTHTFDPVTKMLSWD 342
>gi|38045898 RAB6-interacting protein 2 isoform epsilon [Homo sapiens]
Length = 1116
Score = 30.8 bits (68), Expect = 0.83
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 19/88 (21%)
Query: 3 EQEPTAEQLAQ-------IAAENEEDEH-------SVNYKPPAQKSIQEIQELDKDDESL 48
E++ +QL Q + A+N ED+H N+KP + IQ + ELD++ L
Sbjct: 964 EKDRLVQQLKQQTQNRMKLMADNYEDDHFKSSHSNQTNHKPSPDQIIQPLLELDQNRSKL 1023
Query: 49 RKYKEALLGRVAVSADPNVPNVVVTGLT 76
+ Y +G + P +++ GLT
Sbjct: 1024 KLY----IGHLTTLCHDRDP-LILRGLT 1046
>gi|38045896 RAB6-interacting protein 2 isoform delta [Homo sapiens]
Length = 1088
Score = 30.8 bits (68), Expect = 0.83
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 19/88 (21%)
Query: 3 EQEPTAEQLAQ-------IAAENEEDEH-------SVNYKPPAQKSIQEIQELDKDDESL 48
E++ +QL Q + A+N ED+H N+KP + IQ + ELD++ L
Sbjct: 936 EKDRLVQQLKQQTQNRMKLMADNYEDDHFKSSHSNQTNHKPSPDQIIQPLLELDQNRSKL 995
Query: 49 RKYKEALLGRVAVSADPNVPNVVVTGLT 76
+ Y +G + P +++ GLT
Sbjct: 996 KLY----IGHLTTLCHDRDP-LILRGLT 1018
>gi|228008410 BEN domain containing 4 isoform b [Homo sapiens]
Length = 441
Score = 30.4 bits (67), Expect = 1.1
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 17 ENEEDEHSVNYKPPAQKSIQEIQELDKDDESLRKYKEAL 55
E EE+E Y P Q+ QE+ L +++E LR+ E++
Sbjct: 312 EEEEEEDEEGYCPRCQELEQEVISLQQENEELRRKLESI 350
>gi|148762950 BEN domain containing 4 isoform a [Homo sapiens]
Length = 534
Score = 30.4 bits (67), Expect = 1.1
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 17 ENEEDEHSVNYKPPAQKSIQEIQELDKDDESLRKYKEAL 55
E EE+E Y P Q+ QE+ L +++E LR+ E++
Sbjct: 312 EEEEEEDEEGYCPRCQELEQEVISLQQENEELRRKLESI 350
>gi|6912240 adaptor-related protein complex 3, mu 1 subunit [Homo
sapiens]
Length = 418
Score = 29.6 bits (65), Expect = 1.9
Identities = 25/102 (24%), Positives = 50/102 (49%), Gaps = 5/102 (4%)
Query: 95 ESFKKQSFVLKEGVEYRIKISFRVNRE-IVSGMKYIQHT--YRKGVKIDKTDYMVGSYGP 151
ES + SF+ +G +R+ IS+RV+ + +V+ Y++H+ +++ + D +G
Sbjct: 243 ESERVLSFIPPDG-NFRL-ISYRVSSQNLVAIPVYVKHSISFKENSSCGRFDITIGPKQN 300
Query: 152 RAEEYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSWE 193
+ E +T PK +L + +T D T L+W+
Sbjct: 301 MGKTIEGITVTVHMPKVVLNMNLTPTQGSYTFDPVTKVLTWD 342
>gi|46370095 adaptor-related protein complex 3, mu 1 subunit [Homo
sapiens]
Length = 418
Score = 29.6 bits (65), Expect = 1.9
Identities = 25/102 (24%), Positives = 50/102 (49%), Gaps = 5/102 (4%)
Query: 95 ESFKKQSFVLKEGVEYRIKISFRVNRE-IVSGMKYIQHT--YRKGVKIDKTDYMVGSYGP 151
ES + SF+ +G +R+ IS+RV+ + +V+ Y++H+ +++ + D +G
Sbjct: 243 ESERVLSFIPPDG-NFRL-ISYRVSSQNLVAIPVYVKHSISFKENSSCGRFDITIGPKQN 300
Query: 152 RAEEYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSWE 193
+ E +T PK +L + +T D T L+W+
Sbjct: 301 MGKTIEGITVTVHMPKVVLNMNLTPTQGSYTFDPVTKVLTWD 342
>gi|112789532 poliovirus receptor related 2 isoform delta precursor
[Homo sapiens]
Length = 538
Score = 29.3 bits (64), Expect = 2.4
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 9 EQLAQIAAENEEDEHSVNYKPPAQKSIQEIQEL 41
EQ Q A E+E+ E +YKPP K+ E QE+
Sbjct: 388 EQTLQGAEEDEDLEGPPSYKPPTPKAKLEAQEM 420
>gi|4506407 RAN binding protein 1 [Homo sapiens]
Length = 201
Score = 29.3 bits (64), Expect = 2.4
Identities = 16/55 (29%), Positives = 25/55 (45%)
Query: 1 MAEQEPTAEQLAQIAAENEEDEHSVNYKPPAQKSIQEIQELDKDDESLRKYKEAL 55
MA + T E +E H ++P QEI+ L++D+E L K + L
Sbjct: 1 MAAAKDTHEDHDTSTENTDESNHDPQFEPIVSLPEQEIKTLEEDEEELFKMRAKL 55
>gi|156142192 hypothetical protein LOC51306 isoform 3 [Homo sapiens]
Length = 791
Score = 29.3 bits (64), Expect = 2.4
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 8/82 (9%)
Query: 1 MAEQEPTAEQLAQIAA------ENEEDEHSVNYKPPAQKSIQEIQELDKDDESLRKYKEA 54
M EQE + +A + ENEE++ S N + + E+ E +++DE L +E
Sbjct: 73 MKEQEIVSRIMAGLLENYYEFFENEEEDFSSNDLSSITEQVNELSEEEEEDEKLEHIEE- 131
Query: 55 LLGRVAVSADPNVPNVVVTGLT 76
L ++P VV +T
Sbjct: 132 -LPEEGAEKSNDMPEVVQLRMT 152
>gi|156142190 hypothetical protein LOC51306 isoform 2 [Homo sapiens]
Length = 887
Score = 29.3 bits (64), Expect = 2.4
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 8/82 (9%)
Query: 1 MAEQEPTAEQLAQIAA------ENEEDEHSVNYKPPAQKSIQEIQELDKDDESLRKYKEA 54
M EQE + +A + ENEE++ S N + + E+ E +++DE L +E
Sbjct: 191 MKEQEIVSRIMAGLLENYYEFFENEEEDFSSNDLSSITEQVNELSEEEEEDEKLEHIEE- 249
Query: 55 LLGRVAVSADPNVPNVVVTGLT 76
L ++P VV +T
Sbjct: 250 -LPEEGAEKSNDMPEVVQLRMT 270
>gi|156142188 hypothetical protein LOC51306 isoform 1 [Homo sapiens]
Length = 915
Score = 29.3 bits (64), Expect = 2.4
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 8/82 (9%)
Query: 1 MAEQEPTAEQLAQIAA------ENEEDEHSVNYKPPAQKSIQEIQELDKDDESLRKYKEA 54
M EQE + +A + ENEE++ S N + + E+ E +++DE L +E
Sbjct: 191 MKEQEIVSRIMAGLLENYYEFFENEEEDFSSNDLSSITEQVNELSEEEEEDEKLEHIEE- 249
Query: 55 LLGRVAVSADPNVPNVVVTGLT 76
L ++P VV +T
Sbjct: 250 -LPEEGAEKSNDMPEVVQLRMT 270
>gi|119703749 hydrocephalus inducing isoform a [Homo sapiens]
Length = 5120
Score = 29.3 bits (64), Expect = 2.4
Identities = 22/100 (22%), Positives = 43/100 (43%), Gaps = 3/100 (3%)
Query: 78 VCSSAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGV 137
+CS+ EL L D+E ++ L + VN E+ G ++++ Y K +
Sbjct: 661 LCSNTVQKYELALVVDVEGIGEEVLALLITARCVVPALHLVNTEVDFGHCFLKYPYEKTL 720
Query: 138 KIDKTDYMVGSYGPRAEEYEFLTPV---EEAPKGMLARGS 174
++ D + G Y + + E + V P G+++ S
Sbjct: 721 QLANQDDLPGFYEVQPQVCEEVPTVLFSSPTPSGVISPSS 760
>gi|46361983 hydrocephalus inducing isoform b [Homo sapiens]
Length = 1017
Score = 29.3 bits (64), Expect = 2.4
Identities = 22/100 (22%), Positives = 43/100 (43%), Gaps = 3/100 (3%)
Query: 78 VCSSAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGV 137
+CS+ EL L D+E ++ L + VN E+ G ++++ Y K +
Sbjct: 661 LCSNTVQKYELALVVDVEGIGEEVLALLITARCVVPALHLVNTEVDFGHCFLKYPYEKTL 720
Query: 138 KIDKTDYMVGSYGPRAEEYEFLTPV---EEAPKGMLARGS 174
++ D + G Y + + E + V P G+++ S
Sbjct: 721 QLANQDDLPGFYEVQPQVCEEVPTVLFSSPTPSGVISPSS 760
>gi|55769587 probable nucleolar complex protein 14 [Homo sapiens]
Length = 857
Score = 28.9 bits (63), Expect = 3.2
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 10/60 (16%)
Query: 8 AEQLAQIAAENEEDEHSVNYKPPAQKSIQEIQE---LDKDDESLRKYKEALLGRVAVSAD 64
AE+L ++ ++E++ N K P S ++ + LDKDD L YK+ G++ V D
Sbjct: 291 AERLRRMLGKDEDE----NVKKPKHMSADDLNDGFVLDKDDRRLLSYKD---GKMNVEED 343
>gi|5453708 DNA-dependent protein kinase catalytic
subunit-interacting protein 2 [Homo sapiens]
Length = 187
Score = 28.1 bits (61), Expect = 5.4
Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 51 YKEALLGRVAVSADPNVP-NVVVTGLTLVCSSAPGPLELDLTGDLESFKKQSFVLKEGVE 109
+KE ++ + + N+ N V +++C SAP L+ + + F +F+ KE +E
Sbjct: 70 FKERIVAAFSEDGEGNLTFNDFVDMFSVLCESAPRELKANYAFKIYDFNTDNFICKEDLE 129
>gi|12667788 myosin, heavy polypeptide 9, non-muscle [Homo sapiens]
Length = 1960
Score = 27.7 bits (60), Expect = 7.1
Identities = 13/39 (33%), Positives = 24/39 (61%)
Query: 12 AQIAAENEEDEHSVNYKPPAQKSIQEIQELDKDDESLRK 50
A++ E E +H K Q++IQE++E +++ES R+
Sbjct: 922 ARVEEEEERCQHLQAEKKKMQQNIQELEEQLEEEESARQ 960
>gi|11967991 SRY-box 17 [Homo sapiens]
Length = 414
Score = 27.7 bits (60), Expect = 7.1
Identities = 8/42 (19%), Positives = 25/42 (59%)
Query: 1 MAEQEPTAEQLAQIAAENEEDEHSVNYKPPAQKSIQEIQELD 42
+AE+ P E+ ++ ++ +D + Y+P +K ++ ++ ++
Sbjct: 111 LAEKRPFVEEAERLRVQHMQDHPNYKYRPRRRKQVKRLKRVE 152
>gi|40254434 phosphodiesterase 3B [Homo sapiens]
Length = 1112
Score = 27.3 bits (59), Expect = 9.2
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 13 QIAAENEEDEHSVNYKPPAQKSIQEI--QELDKDDESLRKYKEALLGRVAVSADPN 66
++ E+EE E+++N KPP +KS + I Q + E+ + +KE + AD N
Sbjct: 1032 ELDTEDEEMENNLNPKPPRRKSRRRIFCQLMHHLTENHKIWKEIVEEEEKCKADGN 1087
>gi|221136785 upstream binding transcription factor, RNA polymerase
I-like 1 [Homo sapiens]
Length = 393
Score = 27.3 bits (59), Expect = 9.2
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 3 EQEPTAEQLAQIAAENEEDEHSVNYKPPAQKSIQEIQELDKDDESLRKYK 52
E+ P Q A+ ++ ++ ++ V K QK+I+E++ L K D +K K
Sbjct: 169 EEHPDLVQKAKKSSVSKRTQNKVQKK--FQKNIEEVRSLPKTDRFFKKVK 216
>gi|37537710 La ribonucleoprotein domain family, member 6 isoform 1
[Homo sapiens]
Length = 491
Score = 27.3 bits (59), Expect = 9.2
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 12/72 (16%)
Query: 2 AEQEPTAEQLAQIAA--ENEEDEHSVNYKPPAQKSIQEI----------QELDKDDESLR 49
+E+EP+ A+ ENE ++ +KPP ++ I+++ + L+KD L+
Sbjct: 58 SEEEPSRGHSGTTASGGENEREDLEQEWKPPDEELIKKLVDQIEFYFSDENLEKDAFLLK 117
Query: 50 KYKEALLGRVAV 61
+ LG V+V
Sbjct: 118 HVRRNKLGYVSV 129
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.131 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,123,674
Number of Sequences: 37866
Number of extensions: 336730
Number of successful extensions: 1118
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1099
Number of HSP's gapped (non-prelim): 32
length of query: 204
length of database: 18,247,518
effective HSP length: 97
effective length of query: 107
effective length of database: 14,574,516
effective search space: 1559473212
effective search space used: 1559473212
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.