Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: ARHGDIA Sequence: fasta or formatted (204aa) NCBI GI: 4757768
Description:

Rho GDP dissociation inhibitor (GDI) alpha

Referenced in:

Rho and Rac

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.4         13           2
 C cysteine            0.5          1           1
 D aspartate           7.4         15           3
 E glutamate          10.8         22           2
 F phenylalanine       2.5          5           1
 G glycine             5.4         11           1
 H histidine           1.5          3           1
 I isoleucine          4.9         10           1
 K lysine              9.3         19           2
 L leucine             7.8         16           2
 M methionine          2.0          4           1
 N asparagine          2.9          6           1
 P proline             4.9         10           2
 Q glutamine           3.9          8           1
 R arginine            4.4          9           1
 S serine              7.4         15           2
 T threonine           4.9         10           1
 V valine              7.4         15           3
 W tryptophan          1.5          3           1
 Y tyrosine            4.4          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Rho GDP dissociation inhibitor (GDI) alpha 
ARHGDIB               0.676   Rho GDP dissociation inhibitor (GDI) beta 
ARHGDIG               0.570   Rho GDP dissociation inhibitor (GDI) gamma 
DYNC1I1               0.028   dynein, cytoplasmic 1, intermediate chain 1 isoform...
DYNC1I1               0.018   dynein, cytoplasmic 1, intermediate chain 1 isoform a...
DYNC1I1               0.018   dynein, cytoplasmic 1, intermediate chain 1 isoform...
AP3M2                 0.018   adaptor-related protein complex 3, mu 2 subunit [Ho...
AP3M2                 0.018   adaptor-related protein complex 3, mu 2 subunit [Homo...
ERC1                  0.016   RAB6-interacting protein 2 isoform epsilon 
ERC1                  0.016   RAB6-interacting protein 2 isoform delta 
BEND4                 0.013   BEN domain containing 4 isoform b 
BEND4                 0.013   BEN domain containing 4 isoform a 
AP3M1                 0.013   adaptor-related protein complex 3, mu 1 subunit [Homo...
AP3M1                 0.013   adaptor-related protein complex 3, mu 1 subunit [Hom...
PVRL2                 0.010   poliovirus receptor related 2 isoform delta precurs...
RANBP1                0.010   RAN binding protein 1 
FAM13B                0.010   hypothetical protein LOC51306 isoform 3 
FAM13B                0.010   hypothetical protein LOC51306 isoform 2 
FAM13B                0.010   hypothetical protein LOC51306 isoform 1 
HYDIN                 0.010   hydrocephalus inducing isoform a 
HYDIN                 0.010   hydrocephalus inducing isoform b 
NOP14                 0.010   probable nucleolar complex protein 14 
CIB2                  0.008   DNA-dependent protein kinase catalytic subunit-intera...
MYH9                  0.008   myosin, heavy polypeptide 9, non-muscle 
SOX17                 0.008   SRY-box 17 
PDE3B                 0.005   phosphodiesterase 3B 
UBTFL1                0.005   upstream binding transcription factor, RNA polymera...
LARP6                 0.005   La ribonucleoprotein domain family, member 6 isoform...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press