Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 47078235
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|47078235 GDNF family receptor alpha 2 preproprotein [Homo
sapiens]
(464 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|47078235 GDNF family receptor alpha 2 preproprotein [Homo sap... 959 0.0
gi|4885269 GDNF family receptor alpha 1 isoform a preproprotein ... 417 e-116
gi|224282178 GDNF family receptor alpha 1 isoform b preproprotei... 414 e-115
gi|22035692 GDNF family receptor alpha 1 isoform b preproprotein... 414 e-115
gi|169173216 PREDICTED: similar to GDNF family receptor alpha 2 ... 303 2e-82
gi|169172694 PREDICTED: similar to GDNF family receptor alpha 2 ... 252 6e-67
gi|22035694 GDNF family receptor alpha 3 preproprotein [Homo sap... 204 2e-52
gi|11545875 GDNF family receptor alpha 4 isoform a precursor [Ho... 177 2e-44
gi|22091448 GDNF family receptor alpha 4 isoform b precursor [Ho... 135 1e-31
gi|148231468 GDNF family receptor alpha like [Homo sapiens] 70 4e-12
gi|148886654 polydom [Homo sapiens] 36 0.085
gi|21264363 mannan-binding lectin serine protease 2 isoform 1 pr... 33 0.42
gi|21264361 mannan-binding lectin serine protease 2 isoform 2 pr... 33 0.42
gi|239755326 PREDICTED: hypothetical protein [Homo sapiens] 33 0.42
gi|39930511 collagen and calcium binding EGF domains 1 [Homo sap... 33 0.42
gi|42476320 sushi domain containing 1 [Homo sapiens] 32 1.2
gi|157426866 zinc finger, FYVE domain containing 16 [Homo sapiens] 31 2.1
gi|157426864 zinc finger, FYVE domain containing 16 [Homo sapiens] 31 2.1
gi|120587029 signal peptide, CUB domain, EGF-like 1 [Homo sapiens] 31 2.1
gi|148664242 cell recognition protein CASPR4 isoform 2 [Homo sap... 31 2.7
gi|116284404 cell recognition protein CASPR4 isoform 1 [Homo sap... 31 2.7
gi|38202241 WNT1 inducible signaling pathway protein 3 isoform 3... 30 3.6
gi|4507925 WNT1 inducible signaling pathway protein 3 isoform 1 ... 30 3.6
gi|169202933 PREDICTED: similar to hCG21066 [Homo sapiens] 30 3.6
gi|169203543 PREDICTED: similar to hCG21066 [Homo sapiens] 30 3.6
gi|239744413 PREDICTED: hypothetical protein LOC390213 [Homo sap... 30 3.6
gi|4557841 recombination activating gene 1 [Homo sapiens] 30 4.6
gi|83367077 mucin 16 [Homo sapiens] 30 4.6
gi|11863156 RECK protein precursor [Homo sapiens] 30 4.6
gi|239744133 PREDICTED: hypothetical protein [Homo sapiens] 30 6.1
>gi|47078235 GDNF family receptor alpha 2 preproprotein [Homo
sapiens]
Length = 464
Score = 959 bits (2480), Expect = 0.0
Identities = 464/464 (100%), Positives = 464/464 (100%)
Query: 1 MILANVFCLFFFLDETLRSLASPSSLQGPELHGWRPPVDCVRANELCAAESNCSSRYRTL 60
MILANVFCLFFFLDETLRSLASPSSLQGPELHGWRPPVDCVRANELCAAESNCSSRYRTL
Sbjct: 1 MILANVFCLFFFLDETLRSLASPSSLQGPELHGWRPPVDCVRANELCAAESNCSSRYRTL 60
Query: 61 RQCLAGRDRNTMLANKECQAALEVLQESPLYDCRCKRGMKKELQCLQIYWSIHLGLTEGE 120
RQCLAGRDRNTMLANKECQAALEVLQESPLYDCRCKRGMKKELQCLQIYWSIHLGLTEGE
Sbjct: 61 RQCLAGRDRNTMLANKECQAALEVLQESPLYDCRCKRGMKKELQCLQIYWSIHLGLTEGE 120
Query: 121 EFYEASPYEPVTSRLSDIFRLASIFSGTGADPVVSAKSNHCLDAAKACNLNDNCKKLRSS 180
EFYEASPYEPVTSRLSDIFRLASIFSGTGADPVVSAKSNHCLDAAKACNLNDNCKKLRSS
Sbjct: 121 EFYEASPYEPVTSRLSDIFRLASIFSGTGADPVVSAKSNHCLDAAKACNLNDNCKKLRSS 180
Query: 181 YISICNREISPTERCNRRKCHKALRQFFDRVPSEYTYRMLFCSCQDQACAERRRQTILPS 240
YISICNREISPTERCNRRKCHKALRQFFDRVPSEYTYRMLFCSCQDQACAERRRQTILPS
Sbjct: 181 YISICNREISPTERCNRRKCHKALRQFFDRVPSEYTYRMLFCSCQDQACAERRRQTILPS 240
Query: 241 CSYEDKEKPNCLDLRGVCRTDHLCRSRLADFHANCRASYQTVTSCPADNYQACLGSYAGM 300
CSYEDKEKPNCLDLRGVCRTDHLCRSRLADFHANCRASYQTVTSCPADNYQACLGSYAGM
Sbjct: 241 CSYEDKEKPNCLDLRGVCRTDHLCRSRLADFHANCRASYQTVTSCPADNYQACLGSYAGM 300
Query: 301 IGFDMTPNYVDSSPTGIVVSPWCSCRGSGNMEEECEKFLRDFTENPCLRNAIQAFGNGTD 360
IGFDMTPNYVDSSPTGIVVSPWCSCRGSGNMEEECEKFLRDFTENPCLRNAIQAFGNGTD
Sbjct: 301 IGFDMTPNYVDSSPTGIVVSPWCSCRGSGNMEEECEKFLRDFTENPCLRNAIQAFGNGTD 360
Query: 361 VNVSPKGPSFQATQAPRVEKTPSLPDDLSDSTSLGTSVITTCTSVQEQGLKANNSKELSM 420
VNVSPKGPSFQATQAPRVEKTPSLPDDLSDSTSLGTSVITTCTSVQEQGLKANNSKELSM
Sbjct: 361 VNVSPKGPSFQATQAPRVEKTPSLPDDLSDSTSLGTSVITTCTSVQEQGLKANNSKELSM 420
Query: 421 CFTELTTNIIPGSNKVIKPNSGPSRARPSAALTVLSVLMLKLAL 464
CFTELTTNIIPGSNKVIKPNSGPSRARPSAALTVLSVLMLKLAL
Sbjct: 421 CFTELTTNIIPGSNKVIKPNSGPSRARPSAALTVLSVLMLKLAL 464
>gi|4885269 GDNF family receptor alpha 1 isoform a preproprotein
[Homo sapiens]
Length = 465
Score = 417 bits (1072), Expect = e-116
Identities = 208/396 (52%), Positives = 275/396 (69%), Gaps = 16/396 (4%)
Query: 38 VDCVRANELCAAESNCSSRYRTLRQCLAGRDRNTMLAN-----KECQAALEVLQESPLYD 92
+DCV+A++ C E +CS++YRTLRQC+AG++ N LA+ EC++A+E L++ LY+
Sbjct: 27 LDCVKASDQCLKEQSCSTKYRTLRQCVAGKETNFSLASGLEAKDECRSAMEALKQKSLYN 86
Query: 93 CRCKRGMKKELQCLQIYWSIHLGLTEGEEFYEASPYEPVTSRLSDIFRLASIFSGTGADP 152
CRCKRGMKKE CL+IYWS++ L +G + E SPYEPV SRLSDIFR+ S
Sbjct: 87 CRCKRGMKKEKNCLRIYWSMYQSL-QGNDLLEDSPYEPVNSRLSDIFRVVPFISDVFQQV 145
Query: 153 VVSAKSNHCLDAAKACNLNDNCKKLRSSYISICNREISPTERCNRRKCHKALRQFFDRVP 212
K N+CLDAAKACNL+D CKK RS+YI+ C +S + CNRRKCHKALRQFFD+VP
Sbjct: 146 EHIPKGNNCLDAAKACNLDDICKKYRSAYITPCTTSVS-NDVCNRRKCHKALRQFFDKVP 204
Query: 213 SEYTYRMLFCSCQDQACAERRRQTILPSCSYEDKEKPNCLDLRGVCRTDHLCRSRLADFH 272
++++Y MLFCSC+D AC ERRRQTI+P CSYE++EKPNCL+L+ C+T+++CRSRLADF
Sbjct: 205 AKHSYGMLFCSCRDIACTERRRQTIVPVCSYEEREKPNCLNLQDSCKTNYICRSRLADFF 264
Query: 273 ANCRASYQTVTSCPADNYQACLGSYAGMIGFDMTPNYVDSSPTGIVVSPWCSCRGSGNME 332
NC+ ++V+SC +NY CL +Y+G+IG MTPNY+DSS + V+PWC C SGN
Sbjct: 265 TNCQPESRSVSSCLKENYADCLLAYSGLIGTVMTPNYIDSS--SLSVAPWCDCSNSGNDL 322
Query: 333 EECEKFLRDFTENPCLRNAIQAFGNGTDVNV-SPKGP----SFQATQAPRVEKTPSLPDD 387
EEC KFL F +N CL+NAIQAFGNG+DV V P P + T A RV+ P P
Sbjct: 323 EECLKFLNFFKDNTCLKNAIQAFGNGSDVTVWQPAFPVQTTTATTTTALRVKNKPLGP-- 380
Query: 388 LSDSTSLGTSVITTCTSVQEQGLKANNSKELSMCFT 423
+ T V+ C ++Q Q LK+N S +C +
Sbjct: 381 AGSENEIPTHVLPPCANLQAQKLKSNVSGNTHLCIS 416
>gi|224282178 GDNF family receptor alpha 1 isoform b preproprotein
[Homo sapiens]
Length = 460
Score = 414 bits (1063), Expect = e-115
Identities = 208/396 (52%), Positives = 275/396 (69%), Gaps = 21/396 (5%)
Query: 38 VDCVRANELCAAESNCSSRYRTLRQCLAGRDRNTMLAN-----KECQAALEVLQESPLYD 92
+DCV+A++ C E +CS++YRTLRQC+AG++ N LA+ EC++A+E L++ LY+
Sbjct: 27 LDCVKASDQCLKEQSCSTKYRTLRQCVAGKETNFSLASGLEAKDECRSAMEALKQKSLYN 86
Query: 93 CRCKRGMKKELQCLQIYWSIHLGLTEGEEFYEASPYEPVTSRLSDIFRLASIFSGTGADP 152
CRCKRGMKKE CL+IYWS++ L +G + E SPYEPV SRLSDIFR+ S
Sbjct: 87 CRCKRGMKKEKNCLRIYWSMYQSL-QGNDLLEDSPYEPVNSRLSDIFRVVPFISVEHIP- 144
Query: 153 VVSAKSNHCLDAAKACNLNDNCKKLRSSYISICNREISPTERCNRRKCHKALRQFFDRVP 212
K N+CLDAAKACNL+D CKK RS+YI+ C +S + CNRRKCHKALRQFFD+VP
Sbjct: 145 ----KGNNCLDAAKACNLDDICKKYRSAYITPCTTSVS-NDVCNRRKCHKALRQFFDKVP 199
Query: 213 SEYTYRMLFCSCQDQACAERRRQTILPSCSYEDKEKPNCLDLRGVCRTDHLCRSRLADFH 272
++++Y MLFCSC+D AC ERRRQTI+P CSYE++EKPNCL+L+ C+T+++CRSRLADF
Sbjct: 200 AKHSYGMLFCSCRDIACTERRRQTIVPVCSYEEREKPNCLNLQDSCKTNYICRSRLADFF 259
Query: 273 ANCRASYQTVTSCPADNYQACLGSYAGMIGFDMTPNYVDSSPTGIVVSPWCSCRGSGNME 332
NC+ ++V+SC +NY CL +Y+G+IG MTPNY+DSS + V+PWC C SGN
Sbjct: 260 TNCQPESRSVSSCLKENYADCLLAYSGLIGTVMTPNYIDSS--SLSVAPWCDCSNSGNDL 317
Query: 333 EECEKFLRDFTENPCLRNAIQAFGNGTDVNV-SPKGP----SFQATQAPRVEKTPSLPDD 387
EEC KFL F +N CL+NAIQAFGNG+DV V P P + T A RV+ P P
Sbjct: 318 EECLKFLNFFKDNTCLKNAIQAFGNGSDVTVWQPAFPVQTTTATTTTALRVKNKPLGP-- 375
Query: 388 LSDSTSLGTSVITTCTSVQEQGLKANNSKELSMCFT 423
+ T V+ C ++Q Q LK+N S +C +
Sbjct: 376 AGSENEIPTHVLPPCANLQAQKLKSNVSGNTHLCIS 411
>gi|22035692 GDNF family receptor alpha 1 isoform b preproprotein
[Homo sapiens]
Length = 460
Score = 414 bits (1063), Expect = e-115
Identities = 208/396 (52%), Positives = 275/396 (69%), Gaps = 21/396 (5%)
Query: 38 VDCVRANELCAAESNCSSRYRTLRQCLAGRDRNTMLAN-----KECQAALEVLQESPLYD 92
+DCV+A++ C E +CS++YRTLRQC+AG++ N LA+ EC++A+E L++ LY+
Sbjct: 27 LDCVKASDQCLKEQSCSTKYRTLRQCVAGKETNFSLASGLEAKDECRSAMEALKQKSLYN 86
Query: 93 CRCKRGMKKELQCLQIYWSIHLGLTEGEEFYEASPYEPVTSRLSDIFRLASIFSGTGADP 152
CRCKRGMKKE CL+IYWS++ L +G + E SPYEPV SRLSDIFR+ S
Sbjct: 87 CRCKRGMKKEKNCLRIYWSMYQSL-QGNDLLEDSPYEPVNSRLSDIFRVVPFISVEHIP- 144
Query: 153 VVSAKSNHCLDAAKACNLNDNCKKLRSSYISICNREISPTERCNRRKCHKALRQFFDRVP 212
K N+CLDAAKACNL+D CKK RS+YI+ C +S + CNRRKCHKALRQFFD+VP
Sbjct: 145 ----KGNNCLDAAKACNLDDICKKYRSAYITPCTTSVS-NDVCNRRKCHKALRQFFDKVP 199
Query: 213 SEYTYRMLFCSCQDQACAERRRQTILPSCSYEDKEKPNCLDLRGVCRTDHLCRSRLADFH 272
++++Y MLFCSC+D AC ERRRQTI+P CSYE++EKPNCL+L+ C+T+++CRSRLADF
Sbjct: 200 AKHSYGMLFCSCRDIACTERRRQTIVPVCSYEEREKPNCLNLQDSCKTNYICRSRLADFF 259
Query: 273 ANCRASYQTVTSCPADNYQACLGSYAGMIGFDMTPNYVDSSPTGIVVSPWCSCRGSGNME 332
NC+ ++V+SC +NY CL +Y+G+IG MTPNY+DSS + V+PWC C SGN
Sbjct: 260 TNCQPESRSVSSCLKENYADCLLAYSGLIGTVMTPNYIDSS--SLSVAPWCDCSNSGNDL 317
Query: 333 EECEKFLRDFTENPCLRNAIQAFGNGTDVNV-SPKGP----SFQATQAPRVEKTPSLPDD 387
EEC KFL F +N CL+NAIQAFGNG+DV V P P + T A RV+ P P
Sbjct: 318 EECLKFLNFFKDNTCLKNAIQAFGNGSDVTVWQPAFPVQTTTATTTTALRVKNKPLGP-- 375
Query: 388 LSDSTSLGTSVITTCTSVQEQGLKANNSKELSMCFT 423
+ T V+ C ++Q Q LK+N S +C +
Sbjct: 376 AGSENEIPTHVLPPCANLQAQKLKSNVSGNTHLCIS 411
>gi|169173216 PREDICTED: similar to GDNF family receptor alpha 2
[Homo sapiens]
Length = 364
Score = 303 bits (776), Expect = 2e-82
Identities = 146/146 (100%), Positives = 146/146 (100%)
Query: 1 MILANVFCLFFFLDETLRSLASPSSLQGPELHGWRPPVDCVRANELCAAESNCSSRYRTL 60
MILANVFCLFFFLDETLRSLASPSSLQGPELHGWRPPVDCVRANELCAAESNCSSRYRTL
Sbjct: 1 MILANVFCLFFFLDETLRSLASPSSLQGPELHGWRPPVDCVRANELCAAESNCSSRYRTL 60
Query: 61 RQCLAGRDRNTMLANKECQAALEVLQESPLYDCRCKRGMKKELQCLQIYWSIHLGLTEGE 120
RQCLAGRDRNTMLANKECQAALEVLQESPLYDCRCKRGMKKELQCLQIYWSIHLGLTEGE
Sbjct: 61 RQCLAGRDRNTMLANKECQAALEVLQESPLYDCRCKRGMKKELQCLQIYWSIHLGLTEGE 120
Query: 121 EFYEASPYEPVTSRLSDIFRLASIFS 146
EFYEASPYEPVTSRLSDIFRLASIFS
Sbjct: 121 EFYEASPYEPVTSRLSDIFRLASIFS 146
>gi|169172694 PREDICTED: similar to GDNF family receptor alpha 2
[Homo sapiens]
Length = 140
Score = 252 bits (643), Expect = 6e-67
Identities = 123/140 (87%), Positives = 125/140 (89%)
Query: 1 MILANVFCLFFFLDETLRSLASPSSLQGPELHGWRPPVDCVRANELCAAESNCSSRYRTL 60
MILANVFCLFFFLDETLRSLASPSSLQGPELHGWRPPVDCVRANELCAAESNCSSRYRTL
Sbjct: 1 MILANVFCLFFFLDETLRSLASPSSLQGPELHGWRPPVDCVRANELCAAESNCSSRYRTL 60
Query: 61 RQCLAGRDRNTMLANKECQAALEVLQESPLYDCRCKRGMKKELQCLQIYWSIHLGLTEGE 120
RQCLAGRDRNTMLANKECQAALEVLQESPLYDCRCKRGMKKELQCLQIYWSIHLGLTE E
Sbjct: 61 RQCLAGRDRNTMLANKECQAALEVLQESPLYDCRCKRGMKKELQCLQIYWSIHLGLTEAE 120
Query: 121 EFYEASPYEPVTSRLSDIFR 140
+ E +L FR
Sbjct: 121 FSLKGEVSEVTELQLKPNFR 140
>gi|22035694 GDNF family receptor alpha 3 preproprotein [Homo
sapiens]
Length = 400
Score = 204 bits (518), Expect = 2e-52
Identities = 116/323 (35%), Positives = 164/323 (50%), Gaps = 27/323 (8%)
Query: 40 CVRANELCAAESNCSSRYRTLRQCLAGRDRNTMLANKE------CQAALEVLQESPLYDC 93
C++A C A+ CS+ Y L C + +T L ++E C A + L+ S L C
Sbjct: 44 CLQARRKCQADPTCSAAYHHLDSCTSSI--STPLPSEEPSVPADCLEAAQQLRNSSLIGC 101
Query: 94 RCKRGMKKELQCLQIYWSIHLGLTEGEEFYEASPYEPVTSRLSDIFRLASIFSGTGADPV 153
C R MK ++ CL IYW++H + G + SPYE + L+ + +
Sbjct: 102 MCHRRMKNQVACLDIYWTVHRARSLGNYELDVSPYEDTVTSKPWKMNLSKL-------NM 154
Query: 154 VSAKSNHCLDAAKACNLNDNCKKLRSSYISICNREISPTERCNRRKCHKALRQFFDRVPS 213
+ S+ CL A C LND C +LR +Y C+ C R C + L FF++
Sbjct: 155 LKPDSDLCLKFAMLCTLNDKCDRLRKAYGEACS-----GPHCQRHVCLRQLLTFFEKAAE 209
Query: 214 EYTYRMLFCSC--QDQACAERRRQTILPSCSYEDKEKPNCLDLRGVCRTDHLCRSRLADF 271
+ +L C C D+ C ERRR TI P+C+ PNCL+LR +C +D LCRSRL DF
Sbjct: 210 PHAQGLLLCPCAPNDRGCGERRRNTIAPNCAL-PPVAPNCLELRRLCFSDPLCRSRLVDF 268
Query: 272 HANCRASYQTVTSCPADNYQACLGSYAGMIGFDMTPNYVDSSPTGIVVSPWCSCRGSGNM 331
+C + A CL +Y G+IG MTPN+V + T + +S C+CRGSGN+
Sbjct: 269 QTHCHP--MDILGTCATEQSRCLRAYLGLIGTAMTPNFVSNVNTSVALS--CTCRGSGNL 324
Query: 332 EEECEKFLRDFTENPCLRNAIQA 354
+EECE F+ NPCL AI A
Sbjct: 325 QEECEMLEGFFSHNPCLTEAIAA 347
>gi|11545875 GDNF family receptor alpha 4 isoform a precursor [Homo
sapiens]
Length = 269
Score = 177 bits (449), Expect = 2e-44
Identities = 88/206 (42%), Positives = 117/206 (56%), Gaps = 5/206 (2%)
Query: 155 SAKSNHCLDAAKACNLNDNCKKLRSSYISICNREISPTERCNRRKCHKALRQFFDRVPSE 214
S N C+DAA+AC + C++LRS Y++ C + C R +C +ALR+FF R P
Sbjct: 20 SVGGNRCVDAAEACTADARCQRLRSEYVAQCLGRAAQGG-CPRARCRRALRRFFARGPPA 78
Query: 215 YTYRMLFCSCQDQACAERRRQTILPSCSYE--DKEKPNCLDLRGVCRTDHLCRSRLADFH 272
T+ +LFC C ACAERRRQT +PSC++ P+CL+ C +CR RL F
Sbjct: 79 LTHALLFCPCAGPACAERRRQTFVPSCAFSGPGPAPPSCLEPLNFCERSRVCRPRLLAFQ 138
Query: 273 ANCRASYQTVTSCPADNYQACLGSYAGMIGFDMTPNYVDSSPTGIVVSPWCSCRGSGNME 332
+C + C D CL +YAG++G +TPNYVD+ V+PWC C SGN
Sbjct: 139 VSCTPAPSAPDGCLLDQGARCLRAYAGLVGTAVTPNYVDN--VSARVAPWCDCGASGNRR 196
Query: 333 EECEKFLRDFTENPCLRNAIQAFGNG 358
E+CE F FT N CL AIQAF +G
Sbjct: 197 EDCEAFRGLFTRNRCLDGAIQAFASG 222
>gi|22091448 GDNF family receptor alpha 4 isoform b precursor [Homo
sapiens]
Length = 299
Score = 135 bits (339), Expect = 1e-31
Identities = 85/236 (36%), Positives = 111/236 (47%), Gaps = 35/236 (14%)
Query: 155 SAKSNHCLDAAKACNLNDNCKKLRSSYISICNREISPTERCNRRKCHKALRQFFDRVPSE 214
S N C+DAA+AC + C++LRS Y++ C + C R +C +ALR+FF R P
Sbjct: 20 SVGGNRCVDAAEACTADARCQRLRSEYVAQCLGRAAQGG-CPRARCRRALRRFFARGPPA 78
Query: 215 YTYRMLFCSCQDQACAERRRQTILPSCSYE--DKEKPNCLDLRGVCRTDHLCRSR----- 267
T+ +LFC C ACAERRRQT +PSC++ P+CL+ C +CR
Sbjct: 79 LTHALLFCPCAGPACAERRRQTFVPSCAFSGPGPAPPSCLEPLNFCERSRVCRCARAAAG 138
Query: 268 --------LADFHANCRA-------------SYQTVTSCPADNYQACLGSYAG----MIG 302
L+ H A S Q PA + G G
Sbjct: 139 PWRGWGRGLSPAHRPPAAQASPPGLSGLVHPSAQRPRRLPAGPGRPLPARLRGPRGVPAG 198
Query: 303 FDMTPNYVDSSPTGIVVSPWCSCRGSGNMEEECEKFLRDFTENPCLRNAIQAFGNG 358
+TPNYVD+ V+PWC C SGN E+CE F FT N CL AIQAF +G
Sbjct: 199 TAVTPNYVDN--VSARVAPWCDCGASGNRREDCEAFRGLFTRNRCLDGAIQAFASG 252
>gi|148231468 GDNF family receptor alpha like [Homo sapiens]
Length = 394
Score = 70.1 bits (170), Expect = 4e-12
Identities = 51/196 (26%), Positives = 81/196 (41%), Gaps = 19/196 (9%)
Query: 161 CLDAAKACNLNDNCKKLRSSYISICNREISPTERCNRRKCHKALRQFFDRVPSEYTYRML 220
CL+ A+AC + C +SY+ C+ +P C+ ++C A+R F+ +P +
Sbjct: 131 CLEVAEACVGDVVCNAQLASYLKACSANGNP---CDLKQCQAAIRFFYQNIPFNIAQMLA 187
Query: 221 FCSC--QDQACAERRRQTILPSCSYEDKEKPNCLDLRGVCRTDHLCRSRLADFHANCRAS 278
FC C D C + + +C+ P CL + C+ D LCR F + C
Sbjct: 188 FCDCAQSDIPCQQSKEALHSKTCAVNMVPPPTCLSVIRSCQNDELCRRHYRTFQSKC--- 244
Query: 279 YQTVT-SCPADNYQACLGSYAGMI-----GFDMTPNYVDSSPTGIVVSPWCSCRGSGNME 332
+Q VT C D + C+ + + D Y+D G V+ C+CR E
Sbjct: 245 WQRVTRKCHED--ENCISTLSKQDLTCSGSDDCKAAYIDI--LGTVLQVQCTCRTITQSE 300
Query: 333 EE-CEKFLRDFTENPC 347
E C+ F C
Sbjct: 301 ESLCKIFQHMLHRKSC 316
>gi|148886654 polydom [Homo sapiens]
Length = 3571
Score = 35.8 bits (81), Expect = 0.085
Identities = 35/131 (26%), Positives = 47/131 (35%), Gaps = 21/131 (16%)
Query: 212 PSEYTYRMLFCSCQDQACAERRRQTILPS----------CSYEDKEKPNCLDLRGVCRTD 261
P E +L + +A A R LPS CSY E +C D G C+
Sbjct: 238 PKEEHCYLLHSFEEFEALARRALHEDLPSGSFIQDDMVHCSYLCDEGKDCCDRMGSCK-- 295
Query: 262 HLCRSRLADFHANCRASY------QTVTSCPADNYQACLGSYAGMIGFDMTPNYVDSSPT 315
C + F C Y T+CP+ Y+ GS G+ P+ +SP
Sbjct: 296 --CGTHTGHFECICEKGYYGKGLQYECTACPSGTYKP-EGSPGGISSCIPCPDENHTSPP 352
Query: 316 GIVVSPWCSCR 326
G C CR
Sbjct: 353 GSTSPEDCVCR 363
>gi|21264363 mannan-binding lectin serine protease 2 isoform 1
precursor [Homo sapiens]
Length = 686
Score = 33.5 bits (75), Expect = 0.42
Identities = 25/98 (25%), Positives = 38/98 (38%), Gaps = 15/98 (15%)
Query: 183 SICNREISPTERCNRRKCHKALRQFFD-RVPSEYTYRMLFCSCQDQACAERRRQTILPSC 241
++C +E + TER + +L D S+Y+ F + AE + C
Sbjct: 88 TLCGQESTDTERAPGKDTFYSLGSSLDITFRSDYSNEKPFTGFEAFYAAED-----IDEC 142
Query: 242 SYEDKEKPNCLDLRGVCRTDHLCRSRLADFHANCRASY 279
E P C DH C + L F+ +CRA Y
Sbjct: 143 QVAPGEAPTC---------DHHCHNHLGGFYCSCRAGY 171
>gi|21264361 mannan-binding lectin serine protease 2 isoform 2
precursor [Homo sapiens]
Length = 185
Score = 33.5 bits (75), Expect = 0.42
Identities = 25/98 (25%), Positives = 38/98 (38%), Gaps = 15/98 (15%)
Query: 183 SICNREISPTERCNRRKCHKALRQFFD-RVPSEYTYRMLFCSCQDQACAERRRQTILPSC 241
++C +E + TER + +L D S+Y+ F + AE + C
Sbjct: 88 TLCGQESTDTERAPGKDTFYSLGSSLDITFRSDYSNEKPFTGFEAFYAAED-----IDEC 142
Query: 242 SYEDKEKPNCLDLRGVCRTDHLCRSRLADFHANCRASY 279
E P C DH C + L F+ +CRA Y
Sbjct: 143 QVAPGEAPTC---------DHHCHNHLGGFYCSCRAGY 171
>gi|239755326 PREDICTED: hypothetical protein [Homo sapiens]
Length = 375
Score = 33.5 bits (75), Expect = 0.42
Identities = 37/180 (20%), Positives = 64/180 (35%), Gaps = 17/180 (9%)
Query: 158 SNHCLDAAKACNLNDNCKKLRSSYISICNREISPTERCNRRKCHKALRQFFDRVPSEYTY 217
S C +++ + + +C+ R+S S + + C+ C + R + +
Sbjct: 107 STCCCQSSRTSSTSCSCQSSRTSSTSCSCQSSRTSSTCS---CQTS-RTSSTSCSYQSSR 162
Query: 218 RMLFCSCQDQACAERRRQTILPSCSYEDKEKPNCLDLR--GVCRTDHLCRSRLADFHANC 275
CSCQ T SC+++ + + G T + C+S +C
Sbjct: 163 TSSTCSCQSSG-------TSSTSCNWQSSRTSSTCSCQSSGTSSTSYSCQSSGTSSTCSC 215
Query: 276 RASYQTVTSCPADNYQACLGSYAGMIGFDMTPNYVDSSPTGIVVSPWCSCRGSGNMEEEC 335
++S + TSC + G T SS T S CSC+ SG C
Sbjct: 216 QSSGTSSTSCSCQSSGTSSTCSCQSSGTSSTSCSWQSSRT----SSTCSCQSSGTSSTSC 271
>gi|39930511 collagen and calcium binding EGF domains 1 [Homo
sapiens]
Length = 406
Score = 33.5 bits (75), Expect = 0.42
Identities = 24/115 (20%), Positives = 42/115 (36%), Gaps = 28/115 (24%)
Query: 185 CNREISPTERCNRRKCHKALRQFFDR-VPSEY--------------TYRMLFCSCQDQAC 229
C + C R+KC K + + +P +Y + + C+C
Sbjct: 59 CLKSSGELTTCYRKKCCKGYKFVLGQCIPEDYDVCAEAPCEQQCTDNFGRVLCTCYPGYR 118
Query: 230 AERRRQTILPSCSYEDKEKPNCLDLRGVCRTD-----HLCRSRLADFHANCRASY 279
+R R + +EKP CLD+ ++ H+C + L + CR Y
Sbjct: 119 YDRER--------HRKREKPYCLDIDECASSNGTLCAHICINTLGSYRCECREGY 165
>gi|42476320 sushi domain containing 1 [Homo sapiens]
Length = 747
Score = 32.0 bits (71), Expect = 1.2
Identities = 42/190 (22%), Positives = 63/190 (33%), Gaps = 35/190 (18%)
Query: 162 LDAAKACNLNDNCKKLRSSYISICNREI---SPTERCNRRKCH-KALRQFFDRVPSEYTY 217
LD C+ + C++ I ICN T+ ++ +C A + T
Sbjct: 36 LDVCATCHEHATCQQREGKKICICNYGFVGNGRTQCVDKNECQFGATLVCGNHTSCHNTP 95
Query: 218 RMLFCSCQDQACAERRRQTILPSCSYEDKEKPNCLDLRGVCRTDHLCRSRLADFHANCRA 277
+C C + A +T +P+ + C ++ G+CR C + F C
Sbjct: 96 GGFYCICLEGYRATNNNKTFIPNDGTFCTDIDEC-EVSGLCRHGGRCVNTHGSFECYCMD 154
Query: 278 SY------------QTVTSCP---------------ADNYQACLGS---YAGMIGFDMTP 307
Y TSC NY + LGS YA GF P
Sbjct: 155 GYLPRNGPEPFHPTTDATSCTEIDCGTPPEVPDGYIIGNYTSSLGSQVRYACREGFFSVP 214
Query: 308 NYVDSSPTGI 317
SS TG+
Sbjct: 215 EDTVSSCTGL 224
>gi|157426866 zinc finger, FYVE domain containing 16 [Homo sapiens]
Length = 1539
Score = 31.2 bits (69), Expect = 2.1
Identities = 27/108 (25%), Positives = 50/108 (46%), Gaps = 4/108 (3%)
Query: 334 ECEKFLRDFTENPCLRNAIQAFGNGTDVNVSPKGPSFQATQAPRVEKTPSLPDDLSDSTS 393
+ +K L DF +NP ++ +Q N D N ++Q R P + ++ S
Sbjct: 11 DLDKLLDDFEQNPDEQDYLQDVQNAYDSNHCSVSSELASSQ--RTSLLPKDQECVNSCAS 68
Query: 394 LGTSVITTCTSVQEQGLKANNS--KELSMCFTELTTNIIPGSNKVIKP 439
TS T +S+ E+ LK S E ++ +L +++ G++ I+P
Sbjct: 69 SETSYGTNESSLNEKTLKGLTSIQNEKNVTGLDLLSSVDGGTSDEIQP 116
>gi|157426864 zinc finger, FYVE domain containing 16 [Homo sapiens]
Length = 1539
Score = 31.2 bits (69), Expect = 2.1
Identities = 27/108 (25%), Positives = 50/108 (46%), Gaps = 4/108 (3%)
Query: 334 ECEKFLRDFTENPCLRNAIQAFGNGTDVNVSPKGPSFQATQAPRVEKTPSLPDDLSDSTS 393
+ +K L DF +NP ++ +Q N D N ++Q R P + ++ S
Sbjct: 11 DLDKLLDDFEQNPDEQDYLQDVQNAYDSNHCSVSSELASSQ--RTSLLPKDQECVNSCAS 68
Query: 394 LGTSVITTCTSVQEQGLKANNS--KELSMCFTELTTNIIPGSNKVIKP 439
TS T +S+ E+ LK S E ++ +L +++ G++ I+P
Sbjct: 69 SETSYGTNESSLNEKTLKGLTSIQNEKNVTGLDLLSSVDGGTSDEIQP 116
>gi|120587029 signal peptide, CUB domain, EGF-like 1 [Homo sapiens]
Length = 988
Score = 31.2 bits (69), Expect = 2.1
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 246 KEKPNCLDLRGVCRTDHLCRSRLADFHANCRASYQTVT 283
K+ CL G C DH CR+ + F CR Y+ +T
Sbjct: 281 KDINECLVNNGGC--DHFCRNTVGSFECGCRKGYKLLT 316
>gi|148664242 cell recognition protein CASPR4 isoform 2 [Homo
sapiens]
Length = 1235
Score = 30.8 bits (68), Expect = 2.7
Identities = 28/106 (26%), Positives = 42/106 (39%), Gaps = 5/106 (4%)
Query: 250 NCLDLRGVCRTDHLCRSRLADFHANCRASYQTVTSCPADNYQACLGSYAGMIGFDMTPNY 309
+C +CR CR R F +C S T C ++ A GS + +I ++ NY
Sbjct: 888 HCSSYGKLCRNGGKCRERPIGFFCDCTFSAYTGPFC-SNEISAYFGSGSSVI-YNFQENY 945
Query: 310 VDSSPTGIVVSPWCSCRGSGNMEEECEKFLRDFTENPCLRNAIQAF 355
+ S + S S G + E KF T P L + +F
Sbjct: 946 LLSKNSS---SHAASFHGDMKLSREMIKFSFRTTRTPSLLLFVSSF 988
>gi|116284404 cell recognition protein CASPR4 isoform 1 [Homo sapiens]
Length = 1308
Score = 30.8 bits (68), Expect = 2.7
Identities = 28/106 (26%), Positives = 42/106 (39%), Gaps = 5/106 (4%)
Query: 250 NCLDLRGVCRTDHLCRSRLADFHANCRASYQTVTSCPADNYQACLGSYAGMIGFDMTPNY 309
+C +CR CR R F +C S T C ++ A GS + +I ++ NY
Sbjct: 961 HCSSYGKLCRNGGKCRERPIGFFCDCTFSAYTGPFC-SNEISAYFGSGSSVI-YNFQENY 1018
Query: 310 VDSSPTGIVVSPWCSCRGSGNMEEECEKFLRDFTENPCLRNAIQAF 355
+ S + S S G + E KF T P L + +F
Sbjct: 1019 LLSKNSS---SHAASFHGDMKLSREMIKFSFRTTRTPSLLLFVSSF 1061
>gi|38202241 WNT1 inducible signaling pathway protein 3 isoform 3
[Homo sapiens]
Length = 372
Score = 30.4 bits (67), Expect = 3.6
Identities = 42/180 (23%), Positives = 67/180 (37%), Gaps = 41/180 (22%)
Query: 83 EVLQESPLYDCRCKRGMKKELQCLQIY----WSIHLGLTEGEEFYEAS--PYEPVTSRLS 136
+V Q +PL+ C C G + C ++ H +G + + S EP+ +LS
Sbjct: 151 QVFQPNPLFSCLCVSG---AIGCTPLFIPKLAGSHCSGAKGGKKSDQSNCSLEPLLQQLS 207
Query: 137 DIFRLASIFSGTGADPVVSAKSNHCLDAA----------------KACNLNDNC---KKL 177
++ + P++ K CL A + N N NC K+
Sbjct: 208 TSYKTMPAYRNL---PLIWKKK--CLVQATKWTPCSRTCGMGISNRVTNENSNCEMRKEK 262
Query: 178 RSSYISICNREISPTERCNRRK-------CHKALRQFFDRVPSEYTYRMLFCS-CQDQAC 229
R YI C+ I T + + K KA + F S +Y+ FC C D+ C
Sbjct: 263 RLCYIQPCDSNILKTIKIPKGKTCQPTFQLSKAEKFVFSGCSSTQSYKPTFCGICLDKRC 322
>gi|4507925 WNT1 inducible signaling pathway protein 3 isoform 1
[Homo sapiens]
Length = 354
Score = 30.4 bits (67), Expect = 3.6
Identities = 42/180 (23%), Positives = 67/180 (37%), Gaps = 41/180 (22%)
Query: 83 EVLQESPLYDCRCKRGMKKELQCLQIY----WSIHLGLTEGEEFYEAS--PYEPVTSRLS 136
+V Q +PL+ C C G + C ++ H +G + + S EP+ +LS
Sbjct: 133 QVFQPNPLFSCLCVSG---AIGCTPLFIPKLAGSHCSGAKGGKKSDQSNCSLEPLLQQLS 189
Query: 137 DIFRLASIFSGTGADPVVSAKSNHCLDAA----------------KACNLNDNC---KKL 177
++ + P++ K CL A + N N NC K+
Sbjct: 190 TSYKTMPAYRNL---PLIWKKK--CLVQATKWTPCSRTCGMGISNRVTNENSNCEMRKEK 244
Query: 178 RSSYISICNREISPTERCNRRK-------CHKALRQFFDRVPSEYTYRMLFCS-CQDQAC 229
R YI C+ I T + + K KA + F S +Y+ FC C D+ C
Sbjct: 245 RLCYIQPCDSNILKTIKIPKGKTCQPTFQLSKAEKFVFSGCSSTQSYKPTFCGICLDKRC 304
>gi|169202933 PREDICTED: similar to hCG21066 [Homo sapiens]
Length = 451
Score = 30.4 bits (67), Expect = 3.6
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 18/86 (20%)
Query: 362 NVSPKGPSFQATQAPRVEKTPSLPDDLSDSTSLGTSVITT----------CTSVQEQGLK 411
N+ P S AP+++ P D DST+LGT T CT+ + +GLK
Sbjct: 54 NLRPAAAS-AVRSAPQLQPDPEPEGDSDDSTALGTLEFTLLFEADNSALHCTAHRAKGLK 112
Query: 412 --ANNSKELSMCFTELTTNIIPGSNK 435
A+ S + + N++PG++K
Sbjct: 113 PLASGSAD-----AYVKANLLPGASK 133
>gi|169203543 PREDICTED: similar to hCG21066 [Homo sapiens]
Length = 451
Score = 30.4 bits (67), Expect = 3.6
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 18/86 (20%)
Query: 362 NVSPKGPSFQATQAPRVEKTPSLPDDLSDSTSLGTSVITT----------CTSVQEQGLK 411
N+ P S AP+++ P D DST+LGT T CT+ + +GLK
Sbjct: 54 NLRPAAAS-AVRSAPQLQPDPEPEGDSDDSTALGTLEFTLLFEADNSALHCTAHRAKGLK 112
Query: 412 --ANNSKELSMCFTELTTNIIPGSNK 435
A+ S + + N++PG++K
Sbjct: 113 PLASGSAD-----AYVKANLLPGASK 133
>gi|239744413 PREDICTED: hypothetical protein LOC390213 [Homo
sapiens]
Length = 431
Score = 30.4 bits (67), Expect = 3.6
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 18/86 (20%)
Query: 362 NVSPKGPSFQATQAPRVEKTPSLPDDLSDSTSLGTSVITT----------CTSVQEQGLK 411
N+ P S AP+++ P D DST+LGT T CT+ + +GLK
Sbjct: 108 NLRPAAAS-AVRSAPQLQPDPEPEGDSDDSTALGTLEFTLLFEADNSALHCTAHRAKGLK 166
Query: 412 --ANNSKELSMCFTELTTNIIPGSNK 435
A+ S + + N++PG++K
Sbjct: 167 PLASGSAD-----AYVKANLLPGASK 187
>gi|4557841 recombination activating gene 1 [Homo sapiens]
Length = 1043
Score = 30.0 bits (66), Expect = 4.6
Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 2/88 (2%)
Query: 185 CNREISPTERCNRRKCHKALRQFFDRVPSEYTYRMLFCSCQDQACAERRRQTILPSCSYE 244
CN E+S + + HK ++ F + R S +A R R+ L ++
Sbjct: 363 CNEEVSLEKYNHHISSHKESKEIFVHINKGGRPRQHLLSLTRRAQKHRLRELKLQVKAFA 422
Query: 245 DKEKPNCLDLRGVCRTDHLCRSRLADFH 272
DKE+ D++ VC T L R + H
Sbjct: 423 DKEEGG--DVKSVCMTLFLLALRARNEH 448
>gi|83367077 mucin 16 [Homo sapiens]
Length = 14507
Score = 30.0 bits (66), Expect = 4.6
Identities = 32/100 (32%), Positives = 46/100 (46%), Gaps = 9/100 (9%)
Query: 360 DVNVSPKGPSFQATQAPRVEKTPSL-PDDLSDSTSLGTSVITTCTSVQEQGLKANNSKEL 418
D V P+F T+ E T SL P STS T+ IT TS G+ + + E+
Sbjct: 9851 DTTVFTSNPAFSETRRIPTEPTFSLTPGFRETSTSEETTSITE-TSAVLYGVPTSATTEV 9909
Query: 419 SMCFTELTTNIIPGSNKVIKPNSGPSRARPSAALTVLSVL 458
SM TE+ + SN++ P+S S P V++ L
Sbjct: 9910 SM--TEIMS-----SNRIHIPDSDQSTMSPDIITEVITRL 9942
Score = 29.6 bits (65), Expect = 6.1
Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 3/97 (3%)
Query: 359 TDVNVSPKGPSFQATQAPRVEKTPSLPDDLSDSTSLGTSVITTCTSVQEQGLKANNS-KE 417
T + V+ GP +T A V TPS + + S S T T++ K +S +
Sbjct: 2217 TSIPVNSAGPPGLSTVASDVIDTPSDGAESIPTVSFSPSPDTEVTTISHFPEKTTHSFRT 2276
Query: 418 LSMCFTELTTNI--IPGSNKVIKPNSGPSRARPSAAL 452
+S ELT+ + IPG ++ P+ A PS L
Sbjct: 2277 ISSLTHELTSRVTPIPGDWMSSAMSTKPTGASPSITL 2313
>gi|11863156 RECK protein precursor [Homo sapiens]
Length = 971
Score = 30.0 bits (66), Expect = 4.6
Identities = 27/105 (25%), Positives = 39/105 (37%), Gaps = 15/105 (14%)
Query: 160 HCLDAAKACNLNDNCKKLRSSYISICN--REISPTERCNRRKCHKALRQFFDRVPSEYTY 217
HC+D K+C + K +S+ CN + C+ R C DR T+
Sbjct: 573 HCIDLQKSCIVGGKRKSHGTSFSIDCNVCSCFAGNLVCSTRLCLSEHSSEDDR----RTF 628
Query: 218 RMLFCSCQDQACAERRRQTILPSCSYEDKEKPNCLDLRGVCRTDH 262
L C+C DQ +P C + P+ R V DH
Sbjct: 629 TGLPCNCADQ---------FVPVCGQNGRTYPSACIARCVGLQDH 664
>gi|239744133 PREDICTED: hypothetical protein [Homo sapiens]
Length = 375
Score = 29.6 bits (65), Expect = 6.1
Identities = 27/116 (23%), Positives = 40/116 (34%), Gaps = 13/116 (11%)
Query: 222 CSCQDQACAERRRQTILPSCSYEDKEKPNCLDLR--GVCRTDHLCRSRLADFHANCRASY 279
CSCQ T SC+++ + + G T + C+S +C++S
Sbjct: 167 CSCQSSG-------TSSTSCNWQSSRTSSTCSCQSSGTSSTSYSCQSSGTSSTCSCQSSG 219
Query: 280 QTVTSCPADNYQACLGSYAGMIGFDMTPNYVDSSPTGIVVSPWCSCRGSGNMEEEC 335
+ TSC + G T SS T S CSC+ S C
Sbjct: 220 TSSTSCSCQSSGTSSTCSCQSSGTSSTSCSWQSSRT----SSTCSCQSSRTSSTSC 271
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.132 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,973,967
Number of Sequences: 37866
Number of extensions: 896335
Number of successful extensions: 2236
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 2172
Number of HSP's gapped (non-prelim): 57
length of query: 464
length of database: 18,247,518
effective HSP length: 106
effective length of query: 358
effective length of database: 14,233,722
effective search space: 5095672476
effective search space used: 5095672476
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.