Guide to the Human Genome
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Name: LOC100133881 Sequence: fasta or formatted (364aa) NCBI GI: 169173216
Description:

PREDICTED: similar to GDNF family receptor alpha 2

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.4         38           2
 C cysteine            3.3         12           1
 D aspartate           3.3         12           1
 E glutamate           6.3         23           2
 F phenylalanine       3.3         12           3
 G glycine             8.5         31           3
 H histidine           0.5          2           1
 I isoleucine          2.7         10           1
 K lysine              2.7         10           2
 L leucine            14.8         54           2
 M methionine          2.5          9           1
 N asparagine          1.6          6           1
 P proline             6.3         23           2
 Q glutamine           3.8         14           1
 R arginine            8.2         30           2
 S serine              8.8         32           2
 T threonine           3.6         13           1
 V valine              4.9         18           1
 W tryptophan          2.2          8           1
 Y tyrosine            1.9          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to GDNF family receptor alpha 2 ... 
GFRA2                 0.393   GDNF family receptor alpha 2 preproprotein 
LOC100132336          0.321   PREDICTED: similar to GDNF family receptor alpha 2 ...
GFRA1                 0.151   GDNF family receptor alpha 1 isoform b preproprotei...
GFRA1                 0.151   GDNF family receptor alpha 1 isoform b preproprotein...
GFRA1                 0.148   GDNF family receptor alpha 1 isoform a preproprotein ...
GFRA3                 0.055   GDNF family receptor alpha 3 preproprotein 
SCAP                  0.010   SREBF chaperone protein 
DDAH2                 0.008   dimethylarginine dimethylaminohydrolase 2 
ZIC3                  0.007   zinc finger protein of the cerebellum 3 
LOC731551             0.006   PREDICTED: similar to ectonucleotide pyrophosphatas...
LOC650354             0.006   PREDICTED: similar to ectonucleotide pyrophosphatas...
PWWP2B                0.006   PWWP domain containing 2 isoform 1 
PWWP2B                0.006   PWWP domain containing 2 isoform 2 
LOC729956             0.004   hypothetical protein LOC729956 
NOTUM                 0.004   notum pectinacetylesterase homolog 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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