Guide to the Human Genome
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Name: LOC100132336 Sequence: fasta or formatted (140aa) NCBI GI: 169172694
Description:

PREDICTED: similar to GDNF family receptor alpha 2

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.1         10           2
 C cysteine            6.4          9           1
 D aspartate           2.9          4           1
 E glutamate           9.3         13           1
 F phenylalanine       4.3          6           3
 G glycine             4.3          6           1
 H histidine           1.4          2           1
 I isoleucine          2.1          3           1
 K lysine              4.3          6           2
 L leucine            15.0         21           1
 M methionine          2.1          3           1
 N asparagine          4.3          6           1
 P proline             4.3          6           2
 Q glutamine           5.0          7           1
 R arginine            7.9         11           1
 S serine              7.9         11           2
 T threonine           3.6          5           1
 V valine              4.3          6           1
 W tryptophan          1.4          2           1
 Y tyrosine            2.1          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to GDNF family receptor alpha 2 ... 
LOC100133881          0.857   PREDICTED: similar to GDNF family receptor alpha 2 ...
GFRA2                 0.857   GDNF family receptor alpha 2 preproprotein 
GFRA1                 0.287   GDNF family receptor alpha 1 isoform b preproprotei...
GFRA1                 0.287   GDNF family receptor alpha 1 isoform b preproprotein...
GFRA1                 0.287   GDNF family receptor alpha 1 isoform a preproprotein ...
GFRA3                 0.117   GDNF family receptor alpha 3 preproprotein 
NOTUM                 0.011   notum pectinacetylesterase homolog 
PLAA                  0.011   phospholipase A2-activating protein 
RNF26                 0.011   ring finger protein 26 
HJURP                 0.004   Holliday junction recognition protein 
PCDP1                 0.004   primary ciliary dyskinesia protein 1 
MNDA                  0.004   myeloid cell nuclear differentiation antigen 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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