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Search of human proteins with 46409426
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|46409426 CD164 sialomucin-like 2 [Homo sapiens]
(173 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|46409426 CD164 sialomucin-like 2 [Homo sapiens] 368 e-102
gi|215422421 CD164 molecule, sialomucin isoform 2 [Homo sapiens] 68 3e-12
gi|215422423 CD164 molecule, sialomucin isoform 3 [Homo sapiens] 64 8e-11
gi|21361274 CD164 molecule, sialomucin isoform 1 [Homo sapiens] 63 1e-10
gi|215422425 CD164 molecule, sialomucin isoform 4 [Homo sapiens] 42 2e-04
gi|122937446 von Willebrand factor C domain-containing protein 2... 32 0.36
gi|239757409 PREDICTED: similar to zinc finger protein 208 [Homo... 30 0.80
gi|239746371 PREDICTED: similar to zinc finger protein 208 [Homo... 30 0.80
gi|71274144 AT hook, DNA binding motif, containing 1 [Homo sapiens] 29 2.3
gi|4507577 tumor necrosis factor receptor 2 precursor [Homo sapi... 28 3.0
gi|58197558 tudor domain containing 6 [Homo sapiens] 28 3.0
gi|20143946 potassium channel, subfamily K, member 10 isoform 3 ... 28 3.0
gi|42476272 zinc finger protein 513 [Homo sapiens] 28 3.0
gi|4557853 transcription factor SOX9 [Homo sapiens] 28 4.0
gi|94421471 ring finger protein 17 [Homo sapiens] 28 4.0
gi|169216697 PREDICTED: heat shock transcription factor family, ... 28 5.2
gi|54607108 zinc finger, MIZ-type containing 2 isoform 1 [Homo s... 28 5.2
gi|54607110 zinc finger, MIZ-type containing 2 isoform 2 [Homo s... 28 5.2
gi|7706603 heat shock transcription factor family, X linked 1 [H... 28 5.2
gi|161019170 mucin 5AC [Homo sapiens] 27 8.8
gi|194363771 sperm specific antigen 2 isoform 1 [Homo sapiens] 27 8.8
gi|28557788 sperm specific antigen 2 isoform 2 [Homo sapiens] 27 8.8
gi|153945878 mucin 5, subtype B, tracheobronchial [Homo sapiens] 27 8.8
gi|153792195 DKFZP434H0735 protein [Homo sapiens] 27 8.8
gi|46249382 paired-like homeobox 2a [Homo sapiens] 27 8.8
>gi|46409426 CD164 sialomucin-like 2 [Homo sapiens]
Length = 173
Score = 368 bits (945), Expect = e-102
Identities = 173/173 (100%), Positives = 173/173 (100%)
Query: 1 MEAPGPRALRTALCGGCCCLLLCAQLAVAGKGARGFGRGALIRLNIWPAVQGACKQLEVC 60
MEAPGPRALRTALCGGCCCLLLCAQLAVAGKGARGFGRGALIRLNIWPAVQGACKQLEVC
Sbjct: 1 MEAPGPRALRTALCGGCCCLLLCAQLAVAGKGARGFGRGALIRLNIWPAVQGACKQLEVC 60
Query: 61 EHCVEGDRARNLSSCMWEQCRPEEPGHCVAQSEVVKEGCSIYNRSEACPAAHHHPTYEPK 120
EHCVEGDRARNLSSCMWEQCRPEEPGHCVAQSEVVKEGCSIYNRSEACPAAHHHPTYEPK
Sbjct: 61 EHCVEGDRARNLSSCMWEQCRPEEPGHCVAQSEVVKEGCSIYNRSEACPAAHHHPTYEPK 120
Query: 121 TVTTGSPPVPEAHSPGFDGASFIGGVVLVLSLQAVAFFVLHFLKAKDSTYQTL 173
TVTTGSPPVPEAHSPGFDGASFIGGVVLVLSLQAVAFFVLHFLKAKDSTYQTL
Sbjct: 121 TVTTGSPPVPEAHSPGFDGASFIGGVVLVLSLQAVAFFVLHFLKAKDSTYQTL 173
>gi|215422421 CD164 molecule, sialomucin isoform 2 [Homo sapiens]
Length = 184
Score = 68.2 bits (165), Expect = 3e-12
Identities = 41/111 (36%), Positives = 56/111 (50%), Gaps = 14/111 (12%)
Query: 73 SSCMWEQCRPEEPGHCVAQSEVVKEGCSIYNRSEAC---PAAHHHPTYEPKTVTTG---- 125
++C W +C+ E +C S V C + N ++ C P P+ KTVTT
Sbjct: 78 TTCFWIECKDES--YCSHNSTV--SDCQVGNTTDFCSAKPTVQPSPSTTSKTVTTSGTTN 133
Query: 126 ---SPPVPEAHSPGFDGASFIGGVVLVLSLQAVAFFVLHFLKAKDSTYQTL 173
+P FD ASFIGG+VLVL +QAV FF+ F K+K+ Y TL
Sbjct: 134 NTVTPTSQPVRKSTFDAASFIGGIVLVLGVQAVIFFLYKFCKSKERNYHTL 184
>gi|215422423 CD164 molecule, sialomucin isoform 3 [Homo sapiens]
Length = 178
Score = 63.5 bits (153), Expect = 8e-11
Identities = 42/109 (38%), Positives = 58/109 (53%), Gaps = 16/109 (14%)
Query: 73 SSCMWEQCRPEEPGHCVAQSEVVKEGCSIYNRSEAC--------PAAHHHPTYEPKTVTT 124
++C W +C+ E +C S V C + N ++ C P A+ T TVT
Sbjct: 78 TTCFWIECKDES--YCSHNSTV--SDCQVGNTTDFCSVSTATPVPTANSTGTTN-NTVTP 132
Query: 125 GSPPVPEAHSPGFDGASFIGGVVLVLSLQAVAFFVLHFLKAKDSTYQTL 173
S PV ++ FD ASFIGG+VLVL +QAV FF+ F K+K+ Y TL
Sbjct: 133 TSQPVRKST---FDAASFIGGIVLVLGVQAVIFFLYKFCKSKERNYHTL 178
>gi|21361274 CD164 molecule, sialomucin isoform 1 [Homo sapiens]
Length = 197
Score = 63.2 bits (152), Expect = 1e-10
Identities = 41/124 (33%), Positives = 56/124 (45%), Gaps = 27/124 (21%)
Query: 73 SSCMWEQCRPEEPGHCVAQSEVVKEGCSIYNRSEAC----------------PAAHHHPT 116
++C W +C+ E +C S V C + N ++ C P P+
Sbjct: 78 TTCFWIECKDES--YCSHNSTV--SDCQVGNTTDFCSVSTATPVPTANSTAKPTVQPSPS 133
Query: 117 YEPKTVTTG-------SPPVPEAHSPGFDGASFIGGVVLVLSLQAVAFFVLHFLKAKDST 169
KTVTT +P FD ASFIGG+VLVL +QAV FF+ F K+K+
Sbjct: 134 TTSKTVTTSGTTNNTVTPTSQPVRKSTFDAASFIGGIVLVLGVQAVIFFLYKFCKSKERN 193
Query: 170 YQTL 173
Y TL
Sbjct: 194 YHTL 197
>gi|215422425 CD164 molecule, sialomucin isoform 4 [Homo sapiens]
Length = 189
Score = 42.4 bits (98), Expect = 2e-04
Identities = 30/104 (28%), Positives = 43/104 (41%), Gaps = 27/104 (25%)
Query: 73 SSCMWEQCRPEEPGHCVAQSEVVKEGCSIYNRSEAC----------------PAAHHHPT 116
++C W +C+ E +C S V C + N ++ C P P+
Sbjct: 78 TTCFWIECKDES--YCSHNSTV--SDCQVGNTTDFCSVSTATPVPTANSTAKPTVQPSPS 133
Query: 117 YEPKTVTTG-------SPPVPEAHSPGFDGASFIGGVVLVLSLQ 153
KTVTT +P FD ASFIGG+VLVL ++
Sbjct: 134 TTSKTVTTSGTTNNTVTPTSQPVRKSTFDAASFIGGIVLVLEIR 177
>gi|122937446 von Willebrand factor C domain-containing protein
2-like [Homo sapiens]
Length = 222
Score = 31.6 bits (70), Expect = 0.36
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 73 SSCMWEQCRPEEPGHCVAQSEVVKEGCS-IYNRSEACPAAHHHP 115
S C W +C P HCV V E + +Y + CP + P
Sbjct: 132 SPCEWCRCEPSNEVHCVVADCAVPECVNPVYEPEQCCPVCKNGP 175
>gi|239757409 PREDICTED: similar to zinc finger protein 208 [Homo
sapiens]
Length = 1059
Score = 30.4 bits (67), Expect = 0.80
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 109 PAAHHHPTYEPKTVTTGSPPVPEAHSPGFDGASFIGGV 146
PAA P TV++G P P A +P DG++ GV
Sbjct: 299 PAASAATAAAPSTVSSGPPATPVAPAPSADGSAAPAGV 336
>gi|239746371 PREDICTED: similar to zinc finger protein 208 [Homo
sapiens]
Length = 1059
Score = 30.4 bits (67), Expect = 0.80
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 109 PAAHHHPTYEPKTVTTGSPPVPEAHSPGFDGASFIGGV 146
PAA P TV++G P P A +P DG++ GV
Sbjct: 299 PAASAATAAAPSTVSSGPPATPVAPAPSADGSAAPAGV 336
>gi|71274144 AT hook, DNA binding motif, containing 1 [Homo sapiens]
Length = 1603
Score = 28.9 bits (63), Expect = 2.3
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 114 HPTYEPKTVTTGSPPVPEAHSPGFDGAS 141
HP YEP+ SP + HSPG A+
Sbjct: 195 HPLYEPEPEPRDSPQPGQGHSPGATAAA 222
>gi|4507577 tumor necrosis factor receptor 2 precursor [Homo
sapiens]
Length = 461
Score = 28.5 bits (62), Expect = 3.0
Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 19/119 (15%)
Query: 59 VCEHCVEGDRARNLSSCMWEQCRPEE-------PGH------CVAQSEV--VKEGCSIYN 103
VC+ C G + SS + CRP + PG+ C + S + G
Sbjct: 160 VCKPCAPGTFSNTTSST--DICRPHQICNVVAIPGNASMDAVCTSTSPTRSMAPGAVHLP 217
Query: 104 RSEACPAAHHHPTYEPKTVTTGSPPVPEAHSPGFDGAS--FIGGVVLVLSLQAVAFFVL 160
+ + + H PT EP T + S +P SP +G++ F V L++ + A+ ++
Sbjct: 218 QPVSTRSQHTQPTPEPSTAPSTSFLLPMGPSPPAEGSTGDFALPVGLIVGVTALGLLII 276
>gi|58197558 tudor domain containing 6 [Homo sapiens]
Length = 2096
Score = 28.5 bits (62), Expect = 3.0
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 46 IWPAVQGACKQLEVCEHCVEGDRARNLSSCMWEQCRPE 83
+W +++ + E+ E EG R NLS+ M E PE
Sbjct: 2035 VWSSLRNTWSKCEILETAEEGTRVLNLSNGMEEIVNPE 2072
>gi|20143946 potassium channel, subfamily K, member 10 isoform 3
[Homo sapiens]
Length = 543
Score = 28.5 bits (62), Expect = 3.0
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
Query: 97 EGCSIYNRSEACPAAHHHPTYEPKTVTTGSPPVP 130
EGC + S A PAA P +PK+ T G PP P
Sbjct: 11 EGCR--SDSVAVPAAA--PVCQPKSATNGQPPAP 40
>gi|42476272 zinc finger protein 513 [Homo sapiens]
Length = 541
Score = 28.5 bits (62), Expect = 3.0
Identities = 33/120 (27%), Positives = 47/120 (39%), Gaps = 17/120 (14%)
Query: 15 GGCCCLLLCAQLAVAGKGARGFGRGALIRLNIWPAVQGACKQLEVCEHCVEGDRARNLSS 74
GG L C QL G+G G G L L +G ++LE EG+ +R L +
Sbjct: 281 GGASFLPDCGQLRGEGEGLCGTGSEPLPELLFPWTCRGCGQELE------EGEGSR-LGA 333
Query: 75 CMWEQCRPEEPGHCVAQSEVVKE----GCSIYNRSEACPAAHHHPTYEPKTVTTGSPPVP 130
M +C E G + CS+ CP A H+P + + + T S P
Sbjct: 334 AMCGRCMRGEAGGGASGGPQGPSDKGFACSL------CPFATHYPNHLARHMKTHSGEKP 387
>gi|4557853 transcription factor SOX9 [Homo sapiens]
Length = 509
Score = 28.1 bits (61), Expect = 4.0
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 92 SEVVKEGCSIYNRSEACPAAHHHPTYEPKTVTTGSPPVPEAHSP 135
S +G +Y+ A P Y P T+G P +P+ HSP
Sbjct: 453 SHAAGQGTGLYSTFTYMNPAQR-PMYTPIADTSGVPSIPQTHSP 495
>gi|94421471 ring finger protein 17 [Homo sapiens]
Length = 1623
Score = 28.1 bits (61), Expect = 4.0
Identities = 17/59 (28%), Positives = 27/59 (45%)
Query: 100 SIYNRSEACPAAHHHPTYEPKTVTTGSPPVPEAHSPGFDGASFIGGVVLVLSLQAVAFF 158
S+ + E H+HP PK +T S V +SPG I G+ ++ L+ + F
Sbjct: 655 SLRSHFEKNTTLHYHPPILPKEMTDVSVTVCHINSPGDFYLQLIEGLDILFLLKTIEEF 713
>gi|169216697 PREDICTED: heat shock transcription factor family, X
linked 2 [Homo sapiens]
Length = 423
Score = 27.7 bits (60), Expect = 5.2
Identities = 12/51 (23%), Positives = 24/51 (47%)
Query: 78 EQCRPEEPGHCVAQSEVVKEGCSIYNRSEACPAAHHHPTYEPKTVTTGSPP 128
E+ +PE G C+A ++ ++ + N ++ H P + +GS P
Sbjct: 222 EEDKPEAAGSCLAPADTEQQDHTSPNENDQVTPQHREPAGPNTQIRSGSAP 272
>gi|54607108 zinc finger, MIZ-type containing 2 isoform 1 [Homo
sapiens]
Length = 920
Score = 27.7 bits (60), Expect = 5.2
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 5/34 (14%)
Query: 105 SEACPAAHHHPTYEP-----KTVTTGSPPVPEAH 133
S+ PA H PT+ P T G+PP P+ H
Sbjct: 803 SQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQLH 836
>gi|54607110 zinc finger, MIZ-type containing 2 isoform 2 [Homo
sapiens]
Length = 894
Score = 27.7 bits (60), Expect = 5.2
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 5/34 (14%)
Query: 105 SEACPAAHHHPTYEP-----KTVTTGSPPVPEAH 133
S+ PA H PT+ P T G+PP P+ H
Sbjct: 777 SQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQLH 810
>gi|7706603 heat shock transcription factor family, X linked 1 [Homo
sapiens]
Length = 423
Score = 27.7 bits (60), Expect = 5.2
Identities = 12/51 (23%), Positives = 24/51 (47%)
Query: 78 EQCRPEEPGHCVAQSEVVKEGCSIYNRSEACPAAHHHPTYEPKTVTTGSPP 128
E+ +PE G C+A ++ ++ + N ++ H P + +GS P
Sbjct: 222 EEDKPEAAGSCLAPADTEQQDHTSPNENDQVTPQHREPAGPNTQIRSGSAP 272
>gi|161019170 mucin 5AC [Homo sapiens]
Length = 6207
Score = 26.9 bits (58), Expect = 8.8
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 88 CVAQSEVVKEGCSIYNRSEACPAAHHHPTYEP 119
CV +V +G E CP H+ TY+P
Sbjct: 1494 CVCPPGLVSDGSGGCIAEEDCPCVHNEATYKP 1525
>gi|194363771 sperm specific antigen 2 isoform 1 [Homo sapiens]
Length = 1259
Score = 26.9 bits (58), Expect = 8.8
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 99 CSIYNRSEACPAAHHHPTYEPKTVTTGSPP 128
CS + CP +H H TY P V + +PP
Sbjct: 878 CSAFASPFGCPYSHRHATY-PYRVCSVNPP 906
>gi|28557788 sperm specific antigen 2 isoform 2 [Homo sapiens]
Length = 1256
Score = 26.9 bits (58), Expect = 8.8
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 99 CSIYNRSEACPAAHHHPTYEPKTVTTGSPP 128
CS + CP +H H TY P V + +PP
Sbjct: 878 CSAFASPFGCPYSHRHATY-PYRVCSVNPP 906
>gi|153945878 mucin 5, subtype B, tracheobronchial [Homo sapiens]
Length = 5765
Score = 26.9 bits (58), Expect = 8.8
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 88 CVAQSEVVKEGCSIYNRSEACPAAHHHPTYEP 119
CV +V +G E CP H+ TY+P
Sbjct: 838 CVCPPGLVSDGSGGCIAEEDCPCVHNEATYKP 869
>gi|153792195 DKFZP434H0735 protein [Homo sapiens]
Length = 1639
Score = 26.9 bits (58), Expect = 8.8
Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 6/69 (8%)
Query: 48 PAVQGACKQLEVCEHCVEGDRARNLSSCMW-----EQCRPEEPGHCVAQSEVVKEGCSIY 102
P GA +Q H V + L +W E+ R EP Q+ VK GC ++
Sbjct: 1362 PPQLGASQQYASDFHNVLKEEQEALCLDLWGTERREERREPEPHSRQGQALGVKRGCQLH 1421
Query: 103 NRSEA-CPA 110
S A CPA
Sbjct: 1422 EPSSALCPA 1430
>gi|46249382 paired-like homeobox 2a [Homo sapiens]
Length = 284
Score = 26.9 bits (58), Expect = 8.8
Identities = 20/50 (40%), Positives = 22/50 (44%), Gaps = 12/50 (24%)
Query: 4 PGPRALRTALCGGCCCLLLCAQLAVAGKGARGFGRGALIRLNIW-PAVQG 52
PGP+ L+ AL G VAG G G G GA L W PA G
Sbjct: 222 PGPQPLKGALWAG-----------VAGGGGGGPGAGAAELLKAWQPAESG 260
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.137 0.452
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,116,963
Number of Sequences: 37866
Number of extensions: 391831
Number of successful extensions: 1291
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1268
Number of HSP's gapped (non-prelim): 33
length of query: 173
length of database: 18,247,518
effective HSP length: 95
effective length of query: 78
effective length of database: 14,650,248
effective search space: 1142719344
effective search space used: 1142719344
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.