Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Search of human proteins with 46389562

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|46389562 endosulfine alpha isoform 8 [Homo sapiens]
         (105 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|46389562 endosulfine alpha isoform 8 [Homo sapiens]                207   1e-54
gi|46389554 endosulfine alpha isoform 4 [Homo sapiens]                124   1e-29
gi|46389552 endosulfine alpha isoform 2 [Homo sapiens]                124   1e-29
gi|46389550 endosulfine alpha isoform 1 [Homo sapiens]                124   1e-29
gi|4758272 endosulfine alpha isoform 3 [Homo sapiens]                 124   1e-29
gi|46389560 endosulfine alpha isoform 7 [Homo sapiens]                 88   1e-18
gi|46389558 endosulfine alpha isoform 6 [Homo sapiens]                 88   1e-18
gi|46389556 endosulfine alpha isoform 5 [Homo sapiens]                 88   1e-18
gi|169163530 PREDICTED: similar to endosulfine alpha [Homo sapiens]    69   6e-13
gi|169164492 PREDICTED: similar to hCG2040272 [Homo sapiens]           68   1e-12
gi|169164903 PREDICTED: similar to hCG2040272 [Homo sapiens]           68   1e-12
gi|5729732 cyclic AMP phosphoprotein, 19 kD [Homo sapiens]             68   1e-12
gi|4759128 solute carrier family 24 (sodium/potassium/calcium ex...    37   0.003
gi|83035129 coiled-coil domain containing 108 isoform 1 [Homo sa...    34   0.022
gi|157738619 smoothelin-like 1 [Homo sapiens]                          33   0.048
gi|154354979 myosin X [Homo sapiens]                                   32   0.082
gi|71044479 death inducer-obliterator 1 isoform c [Homo sapiens]       32   0.14 
gi|71044477 death inducer-obliterator 1 isoform b [Homo sapiens]       32   0.14 
gi|18375619 death inducer-obliterator 1 isoform a [Homo sapiens]       32   0.14 
gi|18375617 death inducer-obliterator 1 isoform a [Homo sapiens]       32   0.14 
gi|48255883 troponin T type 2, cardiac isoform 4 [Homo sapiens]        31   0.18 
gi|112789536 troponin T3, skeletal, fast isoform 3 [Homo sapiens]      31   0.18 
gi|112789541 troponin T3, skeletal, fast isoform 4 [Homo sapiens]      31   0.18 
gi|113204617 skeletal muscle ryanodine receptor isoform 2 [Homo ...    31   0.24 
gi|113204615 skeletal muscle ryanodine receptor isoform 1 [Homo ...    31   0.24 
gi|7657465 podocalyxin-like 2 [Homo sapiens]                           31   0.24 
gi|48255881 troponin T type 2, cardiac isoform 3 [Homo sapiens]        30   0.41 
gi|48255879 troponin T type 2, cardiac isoform 2 [Homo sapiens]        30   0.41 
gi|58761548 tau tubulin kinase 1 [Homo sapiens]                        30   0.41 
gi|24308223 hypothetical protein LOC57577 [Homo sapiens]               30   0.41 

>gi|46389562 endosulfine alpha isoform 8 [Homo sapiens]
          Length = 105

 Score =  207 bits (528), Expect = 1e-54
 Identities = 105/105 (100%), Positives = 105/105 (100%)

Query: 1   MSQKQEEENPAEETGEEKQDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQK 60
           MSQKQEEENPAEETGEEKQDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQK
Sbjct: 1   MSQKQEEENPAEETGEEKQDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQK 60

Query: 61  GVWGIVSYPLSLELKEVLRMKSVEVLLDPFLEVLLLNRSRGEFEI 105
           GVWGIVSYPLSLELKEVLRMKSVEVLLDPFLEVLLLNRSRGEFEI
Sbjct: 61  GVWGIVSYPLSLELKEVLRMKSVEVLLDPFLEVLLLNRSRGEFEI 105


>gi|46389554 endosulfine alpha isoform 4 [Homo sapiens]
          Length = 117

 Score =  124 bits (312), Expect = 1e-29
 Identities = 61/61 (100%), Positives = 61/61 (100%)

Query: 1  MSQKQEEENPAEETGEEKQDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQK 60
          MSQKQEEENPAEETGEEKQDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQK
Sbjct: 1  MSQKQEEENPAEETGEEKQDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQK 60

Query: 61 G 61
          G
Sbjct: 61 G 61


>gi|46389552 endosulfine alpha isoform 2 [Homo sapiens]
          Length = 133

 Score =  124 bits (312), Expect = 1e-29
 Identities = 61/61 (100%), Positives = 61/61 (100%)

Query: 1  MSQKQEEENPAEETGEEKQDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQK 60
          MSQKQEEENPAEETGEEKQDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQK
Sbjct: 1  MSQKQEEENPAEETGEEKQDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQK 60

Query: 61 G 61
          G
Sbjct: 61 G 61


>gi|46389550 endosulfine alpha isoform 1 [Homo sapiens]
          Length = 137

 Score =  124 bits (312), Expect = 1e-29
 Identities = 61/61 (100%), Positives = 61/61 (100%)

Query: 1  MSQKQEEENPAEETGEEKQDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQK 60
          MSQKQEEENPAEETGEEKQDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQK
Sbjct: 1  MSQKQEEENPAEETGEEKQDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQK 60

Query: 61 G 61
          G
Sbjct: 61 G 61


>gi|4758272 endosulfine alpha isoform 3 [Homo sapiens]
          Length = 121

 Score =  124 bits (312), Expect = 1e-29
 Identities = 61/61 (100%), Positives = 61/61 (100%)

Query: 1  MSQKQEEENPAEETGEEKQDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQK 60
          MSQKQEEENPAEETGEEKQDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQK
Sbjct: 1  MSQKQEEENPAEETGEEKQDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQK 60

Query: 61 G 61
          G
Sbjct: 61 G 61


>gi|46389560 endosulfine alpha isoform 7 [Homo sapiens]
          Length = 113

 Score = 88.2 bits (217), Expect = 1e-18
 Identities = 42/43 (97%), Positives = 43/43 (100%)

Query: 19 QDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQKG 61
          +DTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQKG
Sbjct: 15 EDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQKG 57


>gi|46389558 endosulfine alpha isoform 6 [Homo sapiens]
          Length = 117

 Score = 88.2 bits (217), Expect = 1e-18
 Identities = 42/43 (97%), Positives = 43/43 (100%)

Query: 19 QDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQKG 61
          +DTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQKG
Sbjct: 15 EDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQKG 57


>gi|46389556 endosulfine alpha isoform 5 [Homo sapiens]
          Length = 133

 Score = 88.2 bits (217), Expect = 1e-18
 Identities = 42/43 (97%), Positives = 43/43 (100%)

Query: 19 QDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQKG 61
          +DTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQKG
Sbjct: 15 EDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQKG 57


>gi|169163530 PREDICTED: similar to endosulfine alpha [Homo sapiens]
          Length = 164

 Score = 69.3 bits (168), Expect = 6e-13
 Identities = 36/53 (67%), Positives = 42/53 (79%), Gaps = 3/53 (5%)

Query: 12  EETGEEKQDT---QEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQKG 61
           E  GE++Q     Q+KEGIL ER EE KLK+KY SLGQ+PGGS+FLMKRLQKG
Sbjct: 61  EPCGEDQQGETKMQDKEGILSERVEEPKLKSKYLSLGQEPGGSNFLMKRLQKG 113


>gi|169164492 PREDICTED: similar to hCG2040272 [Homo sapiens]
          Length = 164

 Score = 68.2 bits (165), Expect = 1e-12
 Identities = 35/53 (66%), Positives = 42/53 (79%), Gaps = 3/53 (5%)

Query: 12  EETGEEKQDT---QEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQKG 61
           E  GE++Q     Q+KEGIL ER EE KLK+KY +LGQ+PGGS+FLMKRLQKG
Sbjct: 61  EPCGEDQQGETKMQDKEGILSERVEEPKLKSKYLNLGQEPGGSNFLMKRLQKG 113


>gi|169164903 PREDICTED: similar to hCG2040272 [Homo sapiens]
          Length = 164

 Score = 68.2 bits (165), Expect = 1e-12
 Identities = 35/53 (66%), Positives = 42/53 (79%), Gaps = 3/53 (5%)

Query: 12  EETGEEKQDT---QEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQKG 61
           E  GE++Q     Q+KEGIL ER EE KLK+KY +LGQ+PGGS+FLMKRLQKG
Sbjct: 61  EPCGEDQQGETKMQDKEGILSERVEEPKLKSKYLNLGQEPGGSNFLMKRLQKG 113


>gi|5729732 cyclic AMP phosphoprotein, 19 kD [Homo sapiens]
          Length = 112

 Score = 68.2 bits (165), Expect = 1e-12
 Identities = 34/54 (62%), Positives = 42/54 (77%), Gaps = 1/54 (1%)

Query: 8  ENPAEETGEEKQDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQKG 61
          E P   + EE+++ ++K    PE+AEEAKLKA+YP LGQKPGGSDFL KRLQKG
Sbjct: 4  EVPEAASAEEQKEMEDKV-TSPEKAEEAKLKARYPHLGQKPGGSDFLRKRLQKG 56


>gi|4759128 solute carrier family 24 (sodium/potassium/calcium
           exchanger), member 1 [Homo sapiens]
          Length = 1099

 Score = 37.0 bits (84), Expect = 0.003
 Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 9/89 (10%)

Query: 3   QKQEEENPAEETGEEKQDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQKGV 62
           +++EEE   EE  EE+++ +E+E    E+  E  L   +P   QK     FL+       
Sbjct: 863 EEEEEEQEEEEEEEEQEEEEEEEEEEEEKGNEEPLSLDWPETRQKQAIYLFLLP------ 916

Query: 63  WGIVSYPLSLELKEVLRMKSVEVLLDPFL 91
              + +PL L + +V R +S +  +  FL
Sbjct: 917 ---IVFPLWLTVPDVRRQESRKFFVFTFL 942


>gi|83035129 coiled-coil domain containing 108 isoform 1 [Homo
            sapiens]
          Length = 1925

 Score = 34.3 bits (77), Expect = 0.022
 Identities = 27/109 (24%), Positives = 52/109 (47%), Gaps = 11/109 (10%)

Query: 1    MSQKQEEENPAEETGEEKQDTQEKEGILPERAEEAKLKAKYPSLG--QKPGGSDFLMKRL 58
            + +++EEE   EE    K++ +EKE    E  +E + K  +  +G   +P   + +  + 
Sbjct: 1775 LEEEEEEEEETEEEELGKEEIEEKE----EERDEKEEKVSWAGIGPTPQPESQESMQWQW 1830

Query: 59   QKGVWGIVSYPLSLELKEVLRMKSV-----EVLLDPFLEVLLLNRSRGE 102
            Q+ +  +V      + KE +R         E LL+  ++ +L+  SRGE
Sbjct: 1831 QQQLNVMVKEEQEQDEKEAIRRLPAFANLQEALLENMIQNILVEASRGE 1879


>gi|157738619 smoothelin-like 1 [Homo sapiens]
          Length = 512

 Score = 33.1 bits (74), Expect = 0.048
 Identities = 17/48 (35%), Positives = 24/48 (50%)

Query: 5   QEEENPAEETGEEKQDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSD 52
           QE     EET  E ++ +EKE  L    ++A+ K   P  GQK   +D
Sbjct: 127 QEMTGRKEETKSEPKEAEEKESTLASEKQKAEEKEAKPESGQKADAND 174


>gi|154354979 myosin X [Homo sapiens]
          Length = 2058

 Score = 32.3 bits (72), Expect = 0.082
 Identities = 26/105 (24%), Positives = 51/105 (48%), Gaps = 7/105 (6%)

Query: 1   MSQKQEEENPAEETGEEKQDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQK 60
           +++K+E+E   ++  EEK+  +E+E        EA+L+A+     +K    + L K  ++
Sbjct: 812 LAEKREQEEKKKQEEEEKKKREEEERERERERREAELRAQQEEETRKQQELEALQKSQKE 871

Query: 61  GVWGIVSYPLSLELKEVLRMKSVEVLLDPFLEVLLLNRSRGEFEI 105
                    L+ EL++    K VE +L    E+  L R + + E+
Sbjct: 872 A-------ELTRELEKQKENKQVEEILRLEKEIEDLQRMKEQQEL 909


>gi|71044479 death inducer-obliterator 1 isoform c [Homo sapiens]
          Length = 2240

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)

Query: 1   MSQKQEEENPAEETGEEKQDTQEKEGILPERAE 33
           + +K+ EE PAE  G E  DT   EG+LP + E
Sbjct: 188 LRKKRREEGPAETVGSEASDT--VEGVLPSKQE 218


>gi|71044477 death inducer-obliterator 1 isoform b [Homo sapiens]
          Length = 1189

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)

Query: 1   MSQKQEEENPAEETGEEKQDTQEKEGILPERAE 33
           + +K+ EE PAE  G E  DT   EG+LP + E
Sbjct: 188 LRKKRREEGPAETVGSEASDT--VEGVLPSKQE 218


>gi|18375619 death inducer-obliterator 1 isoform a [Homo sapiens]
          Length = 562

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)

Query: 1   MSQKQEEENPAEETGEEKQDTQEKEGILPERAE 33
           + +K+ EE PAE  G E  DT   EG+LP + E
Sbjct: 188 LRKKRREEGPAETVGSEASDT--VEGVLPSKQE 218


>gi|18375617 death inducer-obliterator 1 isoform a [Homo sapiens]
          Length = 562

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)

Query: 1   MSQKQEEENPAEETGEEKQDTQEKEGILPERAE 33
           + +K+ EE PAE  G E  DT   EG+LP + E
Sbjct: 188 LRKKRREEGPAETVGSEASDT--VEGVLPSKQE 218


>gi|48255883 troponin T type 2, cardiac isoform 4 [Homo sapiens]
          Length = 282

 Score = 31.2 bits (69), Expect = 0.18
 Identities = 17/52 (32%), Positives = 25/52 (48%)

Query: 3  QKQEEENPAEETGEEKQDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFL 54
          +++E+E  AEE  E + +T+E      E  EEAK     P    KP    F+
Sbjct: 15 EQEEQEEAAEEDAEAEAETEETRAEEDEEEEEAKEAEDGPMEESKPKPRSFM 66


>gi|112789536 troponin T3, skeletal, fast isoform 3 [Homo sapiens]
          Length = 250

 Score = 31.2 bits (69), Expect = 0.18
 Identities = 19/55 (34%), Positives = 25/55 (45%)

Query: 6  EEENPAEETGEEKQDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQK 60
          EE    EE  EE+++ QE+E +  E     KL A     G+K    D   KR  K
Sbjct: 4  EEVEQVEEQYEEEEEAQEEEEVQEEEKPRPKLTAPKIPEGEKVDFDDIQKKRQNK 58


>gi|112789541 troponin T3, skeletal, fast isoform 4 [Homo sapiens]
          Length = 250

 Score = 31.2 bits (69), Expect = 0.18
 Identities = 19/55 (34%), Positives = 25/55 (45%)

Query: 6  EEENPAEETGEEKQDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQK 60
          EE    EE  EE+++ QE+E +  E     KL A     G+K    D   KR  K
Sbjct: 4  EEVEQVEEQYEEEEEAQEEEEVQEEEKPRPKLTAPKIPEGEKVDFDDIQKKRQNK 58


>gi|113204617 skeletal muscle ryanodine receptor isoform 2 [Homo
            sapiens]
          Length = 5033

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 15/40 (37%), Positives = 22/40 (55%)

Query: 3    QKQEEENPAEETGEEKQDTQEKEGILPERAEEAKLKAKYP 42
            ++ EEE   E+  EEK++ +  EG   E  EE  L+ K P
Sbjct: 1893 EEDEEETAQEKEDEEKEEEEAAEGEKEEGLEEGLLQMKLP 1932



 Score = 28.1 bits (61), Expect = 1.5
 Identities = 32/107 (29%), Positives = 54/107 (50%), Gaps = 13/107 (12%)

Query: 4    KQEEENPAEETGEEKQDTQEKEGILPERAEEAKLKAK---YPSLGQKPGGSD--FLMKRL 58
            ++EEE   EE GEE +D +EKE    E A+E + + K     + G+K  G +   L  +L
Sbjct: 1873 EEEEEEDEEEEGEE-EDEEEKEEDEEETAQEKEDEEKEEEEAAEGEKEEGLEEGLLQMKL 1931

Query: 59   QKGV----WGIVSYPLSLELKEVLRMKSVEVLLDPFLEVLLLN-RSR 100
             + V      ++ Y    EL+   R++S+    + +++ L  N RSR
Sbjct: 1932 PESVKLQMCHLLEYFCDQELQH--RVESLAAFAERYVDKLQANQRSR 1976


>gi|113204615 skeletal muscle ryanodine receptor isoform 1 [Homo
            sapiens]
          Length = 5038

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 15/40 (37%), Positives = 22/40 (55%)

Query: 3    QKQEEENPAEETGEEKQDTQEKEGILPERAEEAKLKAKYP 42
            ++ EEE   E+  EEK++ +  EG   E  EE  L+ K P
Sbjct: 1893 EEDEEETAQEKEDEEKEEEEAAEGEKEEGLEEGLLQMKLP 1932



 Score = 28.1 bits (61), Expect = 1.5
 Identities = 32/107 (29%), Positives = 54/107 (50%), Gaps = 13/107 (12%)

Query: 4    KQEEENPAEETGEEKQDTQEKEGILPERAEEAKLKAK---YPSLGQKPGGSD--FLMKRL 58
            ++EEE   EE GEE +D +EKE    E A+E + + K     + G+K  G +   L  +L
Sbjct: 1873 EEEEEEDEEEEGEE-EDEEEKEEDEEETAQEKEDEEKEEEEAAEGEKEEGLEEGLLQMKL 1931

Query: 59   QKGV----WGIVSYPLSLELKEVLRMKSVEVLLDPFLEVLLLN-RSR 100
             + V      ++ Y    EL+   R++S+    + +++ L  N RSR
Sbjct: 1932 PESVKLQMCHLLEYFCDQELQH--RVESLAAFAERYVDKLQANQRSR 1976


>gi|7657465 podocalyxin-like 2 [Homo sapiens]
          Length = 605

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 5/54 (9%)

Query: 3   QKQEEENPAEETGEEKQDTQEKEGILPERA--EEAKLKAKYPSL---GQKPGGS 51
           +++EEE   E+   EKQ+ +E+E +LP     EEAK + +  SL    Q PG +
Sbjct: 165 EEEEEEEEREKEEVEKQEEEEEEELLPVNGSQEEAKPQVRDFSLTSSSQTPGAT 218


>gi|48255881 troponin T type 2, cardiac isoform 3 [Homo sapiens]
          Length = 285

 Score = 30.0 bits (66), Expect = 0.41
 Identities = 17/50 (34%), Positives = 23/50 (46%)

Query: 5  QEEENPAEETGEEKQDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFL 54
          +E+E  AEE  E + +T+E      E  EEAK     P    KP    F+
Sbjct: 22 EEQEEAAEEDAEAEAETEETRAEEDEEEEEAKEAEDGPMEESKPKPRSFM 71


>gi|48255879 troponin T type 2, cardiac isoform 2 [Homo sapiens]
          Length = 288

 Score = 30.0 bits (66), Expect = 0.41
 Identities = 17/50 (34%), Positives = 23/50 (46%)

Query: 5  QEEENPAEETGEEKQDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFL 54
          +E+E  AEE  E + +T+E      E  EEAK     P    KP    F+
Sbjct: 22 EEQEEAAEEDAEAEAETEETRAEEDEEEEEAKEAEDGPMEESKPKPRSFM 71


>gi|58761548 tau tubulin kinase 1 [Homo sapiens]
          Length = 1321

 Score = 30.0 bits (66), Expect = 0.41
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 4/62 (6%)

Query: 4   KQEEENPAEETGEEKQDTQEKEGILPERAEEAKLKAKYPSLGQKPG----GSDFLMKRLQ 59
           ++EEE   EE  EE+++ +E+E    E  E A   A    LG + G    GS+    R Q
Sbjct: 742 EEEEEEDEEEEEEEEEEEEEEEEEEEEEEEAAAAVALGEVLGPRSGSSSEGSERSTDRSQ 801

Query: 60  KG 61
           +G
Sbjct: 802 EG 803



 Score = 27.7 bits (60), Expect = 2.0
 Identities = 13/31 (41%), Positives = 19/31 (61%)

Query: 4   KQEEENPAEETGEEKQDTQEKEGILPERAEE 34
           K+EEE   E+  EE++D +E+E    E  EE
Sbjct: 732 KEEEEEEEEDEEEEEEDEEEEEEEEEEEEEE 762



 Score = 25.8 bits (55), Expect = 7.7
 Identities = 11/32 (34%), Positives = 21/32 (65%)

Query: 3   QKQEEENPAEETGEEKQDTQEKEGILPERAEE 34
           +++EEE+  EE  +E+++ +E+E    E  EE
Sbjct: 735 EEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEE 766


>gi|24308223 hypothetical protein LOC57577 [Homo sapiens]
          Length = 936

 Score = 30.0 bits (66), Expect = 0.41
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 4/40 (10%)

Query: 3   QKQEEEN----PAEETGEEKQDTQEKEGILPERAEEAKLK 38
           +KQEEE      A+E   +K++ +EKE  L  + EE +LK
Sbjct: 680 KKQEEEKLAQLKAQEEERQKREAEEKEAQLERKREEKRLK 719


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.309    0.132    0.357 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,128,473
Number of Sequences: 37866
Number of extensions: 176948
Number of successful extensions: 2366
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 1553
Number of HSP's gapped (non-prelim): 616
length of query: 105
length of database: 18,247,518
effective HSP length: 76
effective length of query: 29
effective length of database: 15,369,702
effective search space: 445721358
effective search space used: 445721358
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press