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Search of human proteins with 45592954
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|45592954 cortexin 1 [Homo sapiens]
(82 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|45592954 cortexin 1 [Homo sapiens] 169 4e-43
gi|188497722 cortexin 3 [Homo sapiens] 75 1e-14
gi|115392142 cortexin 3 [Homo sapiens] 75 1e-14
gi|224586838 cortexin 2 [Homo sapiens] 69 8e-13
gi|239756833 PREDICTED: hypothetical protein [Homo sapiens] 30 0.41
gi|239751318 PREDICTED: hypothetical protein XP_002347804 [Homo ... 30 0.41
gi|239745817 PREDICTED: hypothetical protein XP_002343597 [Homo ... 30 0.41
gi|116534898 desmoglein 2 preproprotein [Homo sapiens] 28 2.1
gi|126032338 ryanodine receptor 3 [Homo sapiens] 28 2.1
gi|4502387 opsin 1 (cone pigments), short-wave-sensitive [Homo s... 28 2.1
gi|169215850 PREDICTED: transmembrane protein 46-like [Homo sapi... 27 4.6
gi|113429443 PREDICTED: transmembrane protein 46-like [Homo sapi... 27 4.6
gi|239743666 PREDICTED: hypothetical protein XP_002342940 isofor... 27 4.6
gi|239743664 PREDICTED: hypothetical protein XP_002342939 isofor... 27 4.6
gi|167466201 WAS protein family homolog 1 [Homo sapiens] 27 4.6
gi|166235136 seizure related 6 homolog (mouse)-like 2 isoform 2 ... 26 6.0
gi|4885197 ephrin A4 isoform a [Homo sapiens] 26 6.0
gi|239755085 PREDICTED: hypothetical protein [Homo sapiens] 26 7.8
gi|169176429 PREDICTED: hypothetical protein [Homo sapiens] 26 7.8
gi|38016937 lemur tyrosine kinase 2 [Homo sapiens] 26 7.8
gi|18450371 protein tyrosine phosphatase, receptor type, A isofo... 26 7.8
gi|18450369 protein tyrosine phosphatase, receptor type, A isofo... 26 7.8
gi|28872814 semaphorin 4G [Homo sapiens] 26 7.8
gi|153792110 HEG homolog 1 [Homo sapiens] 26 7.8
gi|90991712 CD207 antigen, langerin [Homo sapiens] 26 7.8
gi|157694497 zinc finger and BTB domain containing 10 isoform b ... 26 7.8
gi|157694499 zinc finger and BTB domain containing 10 isoform a ... 26 7.8
>gi|45592954 cortexin 1 [Homo sapiens]
Length = 82
Score = 169 bits (428), Expect = 4e-43
Identities = 82/82 (100%), Positives = 82/82 (100%)
Query: 1 MSATWTLSPEPLPPSTGPPVGAGLDAEQRTVFAFVLCLLVVLVLLMVRCVRILLDPYSRM 60
MSATWTLSPEPLPPSTGPPVGAGLDAEQRTVFAFVLCLLVVLVLLMVRCVRILLDPYSRM
Sbjct: 1 MSATWTLSPEPLPPSTGPPVGAGLDAEQRTVFAFVLCLLVVLVLLMVRCVRILLDPYSRM 60
Query: 61 PASSWTDHKEALERGQFDYALV 82
PASSWTDHKEALERGQFDYALV
Sbjct: 61 PASSWTDHKEALERGQFDYALV 82
>gi|188497722 cortexin 3 [Homo sapiens]
Length = 81
Score = 75.1 bits (183), Expect = 1e-14
Identities = 35/73 (47%), Positives = 45/73 (61%)
Query: 9 PEPLPPSTGPPVGAGLDAEQRTVFAFVLCLLVVLVLLMVRCVRILLDPYSRMPASSWTDH 68
P L P + + EQ+ F FV+ L + L +L+VRC RILLDPY MP S+W D
Sbjct: 8 PSSLVPLGNESADSSMSLEQKMTFVFVILLFIFLGILIVRCFRILLDPYRSMPTSTWADG 67
Query: 69 KEALERGQFDYAL 81
E LE+GQFD+AL
Sbjct: 68 LEGLEKGQFDHAL 80
>gi|115392142 cortexin 3 [Homo sapiens]
Length = 81
Score = 75.1 bits (183), Expect = 1e-14
Identities = 35/73 (47%), Positives = 45/73 (61%)
Query: 9 PEPLPPSTGPPVGAGLDAEQRTVFAFVLCLLVVLVLLMVRCVRILLDPYSRMPASSWTDH 68
P L P + + EQ+ F FV+ L + L +L+VRC RILLDPY MP S+W D
Sbjct: 8 PSSLVPLGNESADSSMSLEQKMTFVFVILLFIFLGILIVRCFRILLDPYRSMPTSTWADG 67
Query: 69 KEALERGQFDYAL 81
E LE+GQFD+AL
Sbjct: 68 LEGLEKGQFDHAL 80
>gi|224586838 cortexin 2 [Homo sapiens]
Length = 81
Score = 68.9 bits (167), Expect = 8e-13
Identities = 32/58 (55%), Positives = 42/58 (72%)
Query: 24 LDAEQRTVFAFVLCLLVVLVLLMVRCVRILLDPYSRMPASSWTDHKEALERGQFDYAL 81
L EQ+T FAFV L + L LL++RC +ILLDPYS MP+S+W D E ++G F+YAL
Sbjct: 23 LTLEQKTGFAFVGILCIFLGLLIIRCFKILLDPYSSMPSSTWEDEVEEFDKGTFEYAL 80
>gi|239756833 PREDICTED: hypothetical protein [Homo sapiens]
Length = 281
Score = 30.0 bits (66), Expect = 0.41
Identities = 14/23 (60%), Positives = 14/23 (60%)
Query: 13 PPSTGPPVGAGLDAEQRTVFAFV 35
PP TGP VGAG EQR V V
Sbjct: 57 PPETGPRVGAGSHLEQRVVQVLV 79
>gi|239751318 PREDICTED: hypothetical protein XP_002347804 [Homo
sapiens]
Length = 346
Score = 30.0 bits (66), Expect = 0.41
Identities = 14/23 (60%), Positives = 14/23 (60%)
Query: 13 PPSTGPPVGAGLDAEQRTVFAFV 35
PP TGP VGAG EQR V V
Sbjct: 122 PPETGPRVGAGSHLEQRVVQVLV 144
>gi|239745817 PREDICTED: hypothetical protein XP_002343597 [Homo
sapiens]
Length = 346
Score = 30.0 bits (66), Expect = 0.41
Identities = 14/23 (60%), Positives = 14/23 (60%)
Query: 13 PPSTGPPVGAGLDAEQRTVFAFV 35
PP TGP VGAG EQR V V
Sbjct: 122 PPETGPRVGAGSHLEQRVVQVLV 144
>gi|116534898 desmoglein 2 preproprotein [Homo sapiens]
Length = 1118
Score = 27.7 bits (60), Expect = 2.1
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 20 VGAGLDAEQRTVFAFVLCLLVVLVLLMVRC 49
VG G A + AF+L LLV L+LLM C
Sbjct: 608 VGLGPAAIALMILAFLLLLLVPLLLLMCHC 637
>gi|126032338 ryanodine receptor 3 [Homo sapiens]
Length = 4870
Score = 27.7 bits (60), Expect = 2.1
Identities = 11/18 (61%), Positives = 12/18 (66%)
Query: 1 MSATWTLSPEPLPPSTGP 18
+S W PE LPPSTGP
Sbjct: 3142 LSYWWERGPENLPPSTGP 3159
>gi|4502387 opsin 1 (cone pigments), short-wave-sensitive [Homo
sapiens]
Length = 348
Score = 27.7 bits (60), Expect = 2.1
Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 18/69 (26%)
Query: 3 ATWTLS---------------PEPLPPSTGPP---VGAGLDAEQRTVFAFVLCLLVVLVL 44
ATWT+ PE L S GP VG +E T F F+ C +V L L
Sbjct: 156 ATWTIGIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSESYTWFLFIFCFIVPLSL 215
Query: 45 LMVRCVRIL 53
+ ++L
Sbjct: 216 ICFSYTQLL 224
>gi|169215850 PREDICTED: transmembrane protein 46-like [Homo
sapiens]
Length = 547
Score = 26.6 bits (57), Expect = 4.6
Identities = 9/12 (75%), Positives = 11/12 (91%)
Query: 10 EPLPPSTGPPVG 21
EPLPP+ GPP+G
Sbjct: 190 EPLPPTLGPPLG 201
>gi|113429443 PREDICTED: transmembrane protein 46-like [Homo
sapiens]
Length = 492
Score = 26.6 bits (57), Expect = 4.6
Identities = 9/12 (75%), Positives = 11/12 (91%)
Query: 10 EPLPPSTGPPVG 21
EPLPP+ GPP+G
Sbjct: 190 EPLPPTLGPPLG 201
>gi|239743666 PREDICTED: hypothetical protein XP_002342940 isoform 2
[Homo sapiens]
Length = 465
Score = 26.6 bits (57), Expect = 4.6
Identities = 11/16 (68%), Positives = 11/16 (68%)
Query: 8 SPEPLPPSTGPPVGAG 23
S PLPPST PVG G
Sbjct: 319 SAPPLPPSTAAPVGQG 334
>gi|239743664 PREDICTED: hypothetical protein XP_002342939 isoform 1
[Homo sapiens]
Length = 482
Score = 26.6 bits (57), Expect = 4.6
Identities = 11/16 (68%), Positives = 11/16 (68%)
Query: 8 SPEPLPPSTGPPVGAG 23
S PLPPST PVG G
Sbjct: 336 SAPPLPPSTAAPVGQG 351
>gi|167466201 WAS protein family homolog 1 [Homo sapiens]
Length = 465
Score = 26.6 bits (57), Expect = 4.6
Identities = 11/16 (68%), Positives = 11/16 (68%)
Query: 8 SPEPLPPSTGPPVGAG 23
S PLPPST PVG G
Sbjct: 319 SAPPLPPSTAAPVGQG 334
>gi|166235136 seizure related 6 homolog (mouse)-like 2 isoform 2
[Homo sapiens]
Length = 910
Score = 26.2 bits (56), Expect = 6.0
Identities = 14/44 (31%), Positives = 17/44 (38%)
Query: 6 TLSPEPLPPSTGPPVGAGLDAEQRTVFAFVLCLLVVLVLLMVRC 49
T P P P S GPP+G E+ T + V V C
Sbjct: 130 TAPPPPSPASPGPPLGPEGGEEETTTTIITTTTVTTTVTSPVLC 173
>gi|4885197 ephrin A4 isoform a [Homo sapiens]
Length = 201
Score = 26.2 bits (56), Expect = 6.0
Identities = 11/18 (61%), Positives = 17/18 (94%)
Query: 36 LCLLVVLVLLMVRCVRIL 53
LCLL++L+LL++R +RIL
Sbjct: 184 LCLLLLLLLLILRLLRIL 201
>gi|239755085 PREDICTED: hypothetical protein [Homo sapiens]
Length = 310
Score = 25.8 bits (55), Expect = 7.8
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 6/31 (19%)
Query: 9 PEPLPPSTG------PPVGAGLDAEQRTVFA 33
P PLPP TG P VG GL + ++ V +
Sbjct: 72 PCPLPPDTGAPLGVLPAVGCGLPSRKKPVLS 102
>gi|169176429 PREDICTED: hypothetical protein [Homo sapiens]
Length = 310
Score = 25.8 bits (55), Expect = 7.8
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 6/31 (19%)
Query: 9 PEPLPPSTG------PPVGAGLDAEQRTVFA 33
P PLPP TG P VG GL + ++ V +
Sbjct: 72 PCPLPPDTGAPLGVLPAVGCGLPSRKKPVLS 102
>gi|38016937 lemur tyrosine kinase 2 [Homo sapiens]
Length = 1503
Score = 25.8 bits (55), Expect = 7.8
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 18 PPVGAGLD---AEQRTVFAFV-LCLLVVLVLLMVRCVRILLDP 56
P GAG AE + F + +C L++L++L+ CV DP
Sbjct: 30 PQTGAGEAPPAAEVSSSFVILCVCSLIILIVLIANCVSCCKDP 72
>gi|18450371 protein tyrosine phosphatase, receptor type, A isoform
2 precursor [Homo sapiens]
Length = 793
Score = 25.8 bits (55), Expect = 7.8
Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Query: 2 SATWTLSPEPLPPSTGPPVGAGLDAEQRTVFAFVLCLLVVLVLLMVR 48
S+T +PE PPS P+ A + A + + ++ + +++VL M+R
Sbjct: 125 SSTAATTPETFPPSDETPIIAVMVA----LSSLLVIVFIIIVLYMLR 167
>gi|18450369 protein tyrosine phosphatase, receptor type, A isoform
2 precursor [Homo sapiens]
Length = 793
Score = 25.8 bits (55), Expect = 7.8
Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Query: 2 SATWTLSPEPLPPSTGPPVGAGLDAEQRTVFAFVLCLLVVLVLLMVR 48
S+T +PE PPS P+ A + A + + ++ + +++VL M+R
Sbjct: 125 SSTAATTPETFPPSDETPIIAVMVA----LSSLLVIVFIIIVLYMLR 167
>gi|28872814 semaphorin 4G [Homo sapiens]
Length = 843
Score = 25.8 bits (55), Expect = 7.8
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 10/59 (16%)
Query: 3 ATWTLSPEPLPPSTGPPV----GAGLDAEQRTVFAFV------LCLLVVLVLLMVRCVR 51
A+++L+ P P+ P GA L + R ++ LCL++ LL V C+R
Sbjct: 649 ASYSLTVRPATPAPAPKAPATPGAQLAPDVRLLYVLAIAALGGLCLILASSLLYVACLR 707
>gi|153792110 HEG homolog 1 [Homo sapiens]
Length = 1381
Score = 25.8 bits (55), Expect = 7.8
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 2 SATWTLSPEPLPPSTGPPVGAGLDAEQRTV 31
S W+ SP PLP S A L Q T+
Sbjct: 709 STPWSSSPSPLPVSLTTSTSAPLSVSQTTL 738
>gi|90991712 CD207 antigen, langerin [Homo sapiens]
Length = 328
Score = 25.8 bits (55), Expect = 7.8
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 6 TLSPEPLPPSTGPPVGAGLDAEQRTVFAFVLCLLVVLV 43
+L P PP +GP + G + TV A ++CL +VLV
Sbjct: 20 SLWPREPPPKSGPSLVPG---KTPTVRAALICLTLVLV 54
>gi|157694497 zinc finger and BTB domain containing 10 isoform b
[Homo sapiens]
Length = 847
Score = 25.8 bits (55), Expect = 7.8
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 9 PEPLPPSTGPPVGAGLDAE 27
P P PP+ PP G G D E
Sbjct: 48 PPPAPPALQPPNGRGADEE 66
>gi|157694499 zinc finger and BTB domain containing 10 isoform a
[Homo sapiens]
Length = 871
Score = 25.8 bits (55), Expect = 7.8
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 9 PEPLPPSTGPPVGAGLDAE 27
P P PP+ PP G G D E
Sbjct: 48 PPPAPPALQPPNGRGADEE 66
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.138 0.438
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,845,654
Number of Sequences: 37866
Number of extensions: 147270
Number of successful extensions: 1191
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1170
Number of HSP's gapped (non-prelim): 29
length of query: 82
length of database: 18,247,518
effective HSP length: 54
effective length of query: 28
effective length of database: 16,202,754
effective search space: 453677112
effective search space used: 453677112
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.