Search of human proteins with 13129092

Search of human proteins with 13129092

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|13129092 transmembrane protein 109 [Homo sapiens]
         (243 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|13129092 transmembrane protein 109 [Homo sapiens]                  462   e-130
gi|19923665 BRI3-binding protein [Homo sapiens]                        51   8e-07
gi|116284396 myosin, heavy chain 14 isoform 1 [Homo sapiens]           32   0.50 
gi|116284394 myosin, heavy chain 14 isoform 2 [Homo sapiens]           32   0.50 
gi|224831241 myosin, heavy chain 14 isoform 3 [Homo sapiens]           32   0.50 
gi|156766068 CDC42 binding protein kinase gamma (DMPK-like) [Hom...    32   0.50 
gi|71979937 sialophorin [Homo sapiens]                                 32   0.65 
gi|4507181 sialophorin [Homo sapiens]                                  32   0.65 
gi|91206396 taste receptor, type 1, member 3 [Homo sapiens]            31   1.1  
gi|153791586 myosin, heavy chain 2, skeletal muscle, adult [Homo...    30   1.9  
gi|153792663 myosin, heavy chain 2, skeletal muscle, adult [Homo...    30   1.9  
gi|10864043 kidney and liver proline oxidase 1 [Homo sapiens]          30   1.9  
gi|153945790 myosin, heavy chain 8, skeletal muscle, perinatal [...    30   1.9  
gi|33942072 trinucleotide repeat containing 5 [Homo sapiens]           30   1.9  
gi|115496169 myosin, heavy chain 7, cardiac muscle, beta [Homo s...    30   2.5  
gi|150010558 myosin, heavy polypeptide 15 [Homo sapiens]               30   2.5  
gi|115527082 myosin, heavy chain 1, skeletal muscle, adult [Homo...    30   2.5  
gi|109659847 filamin A interacting protein 1-like isoform 3 [Hom...    29   3.2  
gi|109659849 filamin A interacting protein 1-like isoform 2 [Hom...    29   3.2  
gi|109659845 filamin A interacting protein 1-like isoform 1 [Hom...    29   3.2  
gi|4506813 sodium channel, voltage-gated, type IX, alpha [Homo s...    29   3.2  
gi|88900495 HCF-binding transcription factor Zhangfei [Homo sapi...    29   4.2  
gi|156139147 leucine rich repeat transmembrane neuronal 4 isofor...    29   4.2  
gi|197927168 leucine rich repeat transmembrane neuronal 4 isofor...    29   4.2  
gi|148539940 zinc finger protein 134 [Homo sapiens]                    29   4.2  
gi|115583677 sodium channel, voltage-gated, type I, alpha [Homo ...    28   5.5  
gi|52353302 transmembrane protein 198 [Homo sapiens]                   28   5.5  
gi|213972619 ATPase type 13A2 isoform 2 [Homo sapiens]                 28   7.2  
gi|13435129 ATPase type 13A2 isoform 1 [Homo sapiens]                  28   7.2  
gi|9955963 ATP-binding cassette, sub-family B, member 6 [Homo sa...    28   7.2  

>gi|13129092 transmembrane protein 109 [Homo sapiens]
          Length = 243

 Score =  462 bits (1188), Expect = e-130
 Identities = 243/243 (100%), Positives = 243/243 (100%)

Query: 1   MAASSISSPWGKHVFKAILMVLVALILLHSALAQSRRDFAPPGQQKREAPVDVLTQIGRS 60
           MAASSISSPWGKHVFKAILMVLVALILLHSALAQSRRDFAPPGQQKREAPVDVLTQIGRS
Sbjct: 1   MAASSISSPWGKHVFKAILMVLVALILLHSALAQSRRDFAPPGQQKREAPVDVLTQIGRS 60

Query: 61  VRGTLDAWIGPETMHLVSESSSQVLWAISSAISVAFFALSGIAAQLLNALGLAGDYLAQG 120
           VRGTLDAWIGPETMHLVSESSSQVLWAISSAISVAFFALSGIAAQLLNALGLAGDYLAQG
Sbjct: 61  VRGTLDAWIGPETMHLVSESSSQVLWAISSAISVAFFALSGIAAQLLNALGLAGDYLAQG 120

Query: 121 LKLSPGQVQTFLLWGAGALVVYWLLSLLLGLVLALLGRILWGLKLVIFLAGFVALMRSVP 180
           LKLSPGQVQTFLLWGAGALVVYWLLSLLLGLVLALLGRILWGLKLVIFLAGFVALMRSVP
Sbjct: 121 LKLSPGQVQTFLLWGAGALVVYWLLSLLLGLVLALLGRILWGLKLVIFLAGFVALMRSVP 180

Query: 181 DPSTRALLLLALLILYALLSRLTGSRASGAQLEAKVRGLERQVEELRWRQRRAAKGARSV 240
           DPSTRALLLLALLILYALLSRLTGSRASGAQLEAKVRGLERQVEELRWRQRRAAKGARSV
Sbjct: 181 DPSTRALLLLALLILYALLSRLTGSRASGAQLEAKVRGLERQVEELRWRQRRAAKGARSV 240

Query: 241 EEE 243
           EEE
Sbjct: 241 EEE 243


>gi|19923665 BRI3-binding protein [Homo sapiens]
          Length = 251

 Score = 51.2 bits (121), Expect = 8e-07
 Identities = 55/239 (23%), Positives = 99/239 (41%), Gaps = 22/239 (9%)

Query: 11  GKHVFKAILMVLVALILLHSALAQSRRDFAPPGQQKREAPVDVLTQIGRSVRGTLDAWIG 70
           G  + +A L++L+ L+LL   LA   +     G  ++ +    +    +SV     +  G
Sbjct: 7   GGPLARAGLLLLLLLLLLLGLLAPGAQGARGRGGAEKNSYRRTVNTFSQSV----SSLFG 62

Query: 71  PETMHLVSESSSQVLWAISSAISVAFFALSGIAAQLLNALGLAGDYLAQGLK---LSPGQ 127
            + +    +  +++       + +    L  +  +LL+ LGL    L+Q      +S   
Sbjct: 63  EDNVRAAQKFLARLTERFVLGVDMFVETLWKVWTELLDVLGLDVSNLSQYFSPASVSSSP 122

Query: 128 VQTFLLWGAGALVVYWLLSLLLGLVLALL----GRILWGLKLVIFLAGFVALMRSVPDPS 183
            +  LL G   L+ YW LSL LG   ++L    GR  W +++V+F    V ++       
Sbjct: 123 ARALLLVGV-VLLAYWFLSLTLGFTFSVLHVVFGRFFWIVRVVLFSMSCVYILHKYEGEP 181

Query: 184 TRALLLLALLILYALLSRLTG----------SRASGAQLEAKVRGLERQVEELRWRQRR 232
             A+L L  ++    ++   G          S  S   +E K+  LE+QV  L  R  R
Sbjct: 182 ENAVLPLCFVVAVYFMTGPMGFYWRSSPSGPSNPSNPSVEEKLEHLEKQVRLLNIRLNR 240


>gi|116284396 myosin, heavy chain 14 isoform 1 [Homo sapiens]
          Length = 2003

 Score = 32.0 bits (71), Expect = 0.50
 Identities = 18/48 (37%), Positives = 29/48 (60%)

Query: 192  LLILYALLSRLTGSRASGAQLEAKVRGLERQVEELRWRQRRAAKGARS 239
            LL + +L + L+  R+  A+ E+  + LERQ++ELR R      GAR+
Sbjct: 1788 LLQVESLTTELSAERSFSAKAESGRQQLERQIQELRGRLGEEDAGARA 1835


>gi|116284394 myosin, heavy chain 14 isoform 2 [Homo sapiens]
          Length = 1995

 Score = 32.0 bits (71), Expect = 0.50
 Identities = 18/48 (37%), Positives = 29/48 (60%)

Query: 192  LLILYALLSRLTGSRASGAQLEAKVRGLERQVEELRWRQRRAAKGARS 239
            LL + +L + L+  R+  A+ E+  + LERQ++ELR R      GAR+
Sbjct: 1780 LLQVESLTTELSAERSFSAKAESGRQQLERQIQELRGRLGEEDAGARA 1827


>gi|224831241 myosin, heavy chain 14 isoform 3 [Homo sapiens]
          Length = 2036

 Score = 32.0 bits (71), Expect = 0.50
 Identities = 18/48 (37%), Positives = 29/48 (60%)

Query: 192  LLILYALLSRLTGSRASGAQLEAKVRGLERQVEELRWRQRRAAKGARS 239
            LL + +L + L+  R+  A+ E+  + LERQ++ELR R      GAR+
Sbjct: 1821 LLQVESLTTELSAERSFSAKAESGRQQLERQIQELRGRLGEEDAGARA 1868


>gi|156766068 CDC42 binding protein kinase gamma (DMPK-like) [Homo
           sapiens]
          Length = 1551

 Score = 32.0 bits (71), Expect = 0.50
 Identities = 18/37 (48%), Positives = 25/37 (67%), Gaps = 2/37 (5%)

Query: 197 ALLSRLTGSRASGAQLEAKVRGLERQVEEL--RWRQR 231
           AL S+L  +RA+  +LEA+V  L RQV +L  +W QR
Sbjct: 542 ALSSQLEEARAAQRELEAQVSSLSRQVTQLQGQWEQR 578


>gi|71979937 sialophorin [Homo sapiens]
          Length = 400

 Score = 31.6 bits (70), Expect = 0.65
 Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 7/55 (12%)

Query: 17  AILMVLVALILLHSALAQSRRDFAPPGQQKREAPVDVLTQIGRSVRGTLDAWIGP 71
           A+L+ L+A+I+L + L   RR      +QKR     VL++ G+   G +DAW GP
Sbjct: 259 AVLVALLAVIVLVALLLLWRR------RQKRRTGALVLSRGGKR-NGVVDAWAGP 306


>gi|4507181 sialophorin [Homo sapiens]
          Length = 400

 Score = 31.6 bits (70), Expect = 0.65
 Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 7/55 (12%)

Query: 17  AILMVLVALILLHSALAQSRRDFAPPGQQKREAPVDVLTQIGRSVRGTLDAWIGP 71
           A+L+ L+A+I+L + L   RR      +QKR     VL++ G+   G +DAW GP
Sbjct: 259 AVLVALLAVIVLVALLLLWRR------RQKRRTGALVLSRGGKR-NGVVDAWAGP 306


>gi|91206396 taste receptor, type 1, member 3 [Homo sapiens]
          Length = 852

 Score = 30.8 bits (68), Expect = 1.1
 Identities = 18/28 (64%), Positives = 20/28 (71%), Gaps = 1/28 (3%)

Query: 131 FLLWGAGA-LVVYWLLSLLLGLVLALLG 157
           FL WG  A L++  LLSL LGLVLA LG
Sbjct: 561 FLAWGEPAVLLLLLLLSLALGLVLAALG 588


>gi|153791586 myosin, heavy chain 2, skeletal muscle, adult [Homo
            sapiens]
          Length = 1941

 Score = 30.0 bits (66), Expect = 1.9
 Identities = 17/40 (42%), Positives = 22/40 (55%)

Query: 202  LTGSRASGAQLEAKVRGLERQVEELRWRQRRAAKGARSVE 241
            L G +    +LEA+VR LE +VE  + R   A KG R  E
Sbjct: 1811 LKGGKKQIQKLEARVRELEGEVESEQKRNAEAVKGLRKHE 1850


>gi|153792663 myosin, heavy chain 2, skeletal muscle, adult [Homo
            sapiens]
          Length = 1941

 Score = 30.0 bits (66), Expect = 1.9
 Identities = 17/40 (42%), Positives = 22/40 (55%)

Query: 202  LTGSRASGAQLEAKVRGLERQVEELRWRQRRAAKGARSVE 241
            L G +    +LEA+VR LE +VE  + R   A KG R  E
Sbjct: 1811 LKGGKKQIQKLEARVRELEGEVESEQKRNAEAVKGLRKHE 1850


>gi|10864043 kidney and liver proline oxidase 1 [Homo sapiens]
          Length = 536

 Score = 30.0 bits (66), Expect = 1.9
 Identities = 22/45 (48%), Positives = 24/45 (53%), Gaps = 10/45 (22%)

Query: 184 TRALLLLAL----------LILYALLSRLTGSRASGAQLEAKVRG 218
           TRALL+L L          L+L A   RL GSR SGA L A V G
Sbjct: 114 TRALLVLRLCAWPPLVTHGLLLQAWSRRLLGSRLSGAFLRASVYG 158


>gi|153945790 myosin, heavy chain 8, skeletal muscle, perinatal [Homo
            sapiens]
          Length = 1937

 Score = 30.0 bits (66), Expect = 1.9
 Identities = 17/40 (42%), Positives = 22/40 (55%)

Query: 202  LTGSRASGAQLEAKVRGLERQVEELRWRQRRAAKGARSVE 241
            L G +    +LEA+VR LE +VE  + R   A KG R  E
Sbjct: 1808 LKGGKKQIQKLEARVRELEGEVENEQKRNAEAVKGLRKHE 1847


>gi|33942072 trinucleotide repeat containing 5 [Homo sapiens]
          Length = 278

 Score = 30.0 bits (66), Expect = 1.9
 Identities = 14/24 (58%), Positives = 19/24 (79%)

Query: 176 MRSVPDPSTRALLLLALLILYALL 199
           M S+P+P++R LLLL LL+L  LL
Sbjct: 1   MDSMPEPASRCLLLLPLLLLLLLL 24


>gi|115496169 myosin, heavy chain 7, cardiac muscle, beta [Homo
            sapiens]
          Length = 1935

 Score = 29.6 bits (65), Expect = 2.5
 Identities = 17/49 (34%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 195  LYALLSRLTGSRASGAQLEAKVRGLERQVEELRWRQRRAAKGARSVEEE 243
            L AL +R+   +A G+QL+ K++ L+ ++EEL   +  A + AR+  E+
Sbjct: 1087 LNALNARIEDEQALGSQLQKKLKELQARIEELE-EELEAERTARAKVEK 1134



 Score = 28.5 bits (62), Expect = 5.5
 Identities = 15/40 (37%), Positives = 22/40 (55%)

Query: 202  LTGSRASGAQLEAKVRGLERQVEELRWRQRRAAKGARSVE 241
            L G +    +LEA+VR LE ++E  + R   + KG R  E
Sbjct: 1805 LKGGKKQLQKLEARVRELENELEAEQKRNAESVKGMRKSE 1844


>gi|150010558 myosin, heavy polypeptide 15 [Homo sapiens]
          Length = 1946

 Score = 29.6 bits (65), Expect = 2.5
 Identities = 17/40 (42%), Positives = 24/40 (60%)

Query: 202  LTGSRASGAQLEAKVRGLERQVEELRWRQRRAAKGARSVE 241
            L GSR    +LE++VR LE ++E    R   A +GAR +E
Sbjct: 1817 LMGSRKQIQKLESRVRELEGELEGEIRRSAEAQRGARRLE 1856


>gi|115527082 myosin, heavy chain 1, skeletal muscle, adult [Homo
            sapiens]
          Length = 1939

 Score = 29.6 bits (65), Expect = 2.5
 Identities = 17/42 (40%), Positives = 23/42 (54%)

Query: 202  LTGSRASGAQLEAKVRGLERQVEELRWRQRRAAKGARSVEEE 243
            L G +    +LEA+VR LE +VE  + R   A KG R  E +
Sbjct: 1809 LKGGKKQIQKLEARVRELEGEVESEQKRNVEAVKGLRKHERK 1850


>gi|109659847 filamin A interacting protein 1-like isoform 3 [Homo
           sapiens]
          Length = 1133

 Score = 29.3 bits (64), Expect = 3.2
 Identities = 12/45 (26%), Positives = 24/45 (53%)

Query: 198 LLSRLTGSRASGAQLEAKVRGLERQVEELRWRQRRAAKGARSVEE 242
           ++++LT   +   QL+ K+  L RQ++EL    R   K    +++
Sbjct: 309 IMAKLTNEDSQNRQLQQKLAALSRQIDELEETNRSLRKAEEELQD 353


>gi|109659849 filamin A interacting protein 1-like isoform 2 [Homo
           sapiens]
          Length = 893

 Score = 29.3 bits (64), Expect = 3.2
 Identities = 12/45 (26%), Positives = 24/45 (53%)

Query: 198 LLSRLTGSRASGAQLEAKVRGLERQVEELRWRQRRAAKGARSVEE 242
           ++++LT   +   QL+ K+  L RQ++EL    R   K    +++
Sbjct: 69  IMAKLTNEDSQNRQLQQKLAALSRQIDELEETNRSLRKAEEELQD 113


>gi|109659845 filamin A interacting protein 1-like isoform 1 [Homo
           sapiens]
          Length = 1135

 Score = 29.3 bits (64), Expect = 3.2
 Identities = 12/45 (26%), Positives = 24/45 (53%)

Query: 198 LLSRLTGSRASGAQLEAKVRGLERQVEELRWRQRRAAKGARSVEE 242
           ++++LT   +   QL+ K+  L RQ++EL    R   K    +++
Sbjct: 309 IMAKLTNEDSQNRQLQQKLAALSRQIDELEETNRSLRKAEEELQD 353


>gi|4506813 sodium channel, voltage-gated, type IX, alpha [Homo
            sapiens]
          Length = 1977

 Score = 29.3 bits (64), Expect = 3.2
 Identities = 40/167 (23%), Positives = 70/167 (41%), Gaps = 16/167 (9%)

Query: 42   PGQQKREAPVDVLTQIGRSVRGTLDAWIGPETMHLVSESSSQVLWAISSAISVAFFALSG 101
            PG + +    D++T     +   +   +   TM +  E  SQ +  +   I+V F  L  
Sbjct: 1489 PGNKIQGCIFDLVTNQAFDISIMVLICLNMVTMMVEKEGQSQHMTEVLYWINVVFIILF- 1547

Query: 102  IAAQLLNALGLAGDYLAQGLKLSPGQVQTFLLWG---AGALVVYWLLSLLLGLV-LALLG 157
                +L  + L   Y   G  +    V    + G   A  +  Y++   L  ++ LA +G
Sbjct: 1548 TGECVLKLISLRHYYFTVGWNIFDFVVVIISIVGMFLADLIETYFVSPTLFRVIRLARIG 1607

Query: 158  RILW------GLKLVIFLAGFVALMRSVPDPSTRALLLLALLILYAL 198
            RIL       G++ ++F     ALM S+P      LLL  ++ +YA+
Sbjct: 1608 RILRLVKGAKGIRTLLF-----ALMMSLPALFNIGLLLFLVMFIYAI 1649


>gi|88900495 HCF-binding transcription factor Zhangfei [Homo
           sapiens]
          Length = 354

 Score = 28.9 bits (63), Expect = 4.2
 Identities = 13/32 (40%), Positives = 21/32 (65%)

Query: 212 LEAKVRGLERQVEELRWRQRRAAKGARSVEEE 243
           LE++VRGL  + +ELR   R   K  ++++EE
Sbjct: 232 LESRVRGLAAENQELRAENRELGKRVQALQEE 263


>gi|156139147 leucine rich repeat transmembrane neuronal 4 isoform b
           [Homo sapiens]
          Length = 518

 Score = 28.9 bits (63), Expect = 4.2
 Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 9/90 (10%)

Query: 42  PGQQKREAPVDVLTQIGRSVRGTLDAWIGPETMHLVSESSSQVLWAISSAISVAFFALSG 101
           P  QK     + LT I +    T++AWI      L+S + S  +W  S +I   F+ L  
Sbjct: 277 PNLQKLNLDSNKLTNISQE---TVNAWIS-----LISITLSGNMWECSRSICPLFYWLKN 328

Query: 102 IAAQLLNALGLAGDYLAQGLKLSPGQVQTF 131
                 + +  AG    QG K+S   V+T+
Sbjct: 329 FKGNKESTMICAGPKHIQGEKVSDA-VETY 357


>gi|197927168 leucine rich repeat transmembrane neuronal 4 isoform a
           [Homo sapiens]
          Length = 590

 Score = 28.9 bits (63), Expect = 4.2
 Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 9/90 (10%)

Query: 42  PGQQKREAPVDVLTQIGRSVRGTLDAWIGPETMHLVSESSSQVLWAISSAISVAFFALSG 101
           P  QK     + LT I +    T++AWI      L+S + S  +W  S +I   F+ L  
Sbjct: 277 PNLQKLNLDSNKLTNISQE---TVNAWIS-----LISITLSGNMWECSRSICPLFYWLKN 328

Query: 102 IAAQLLNALGLAGDYLAQGLKLSPGQVQTF 131
                 + +  AG    QG K+S   V+T+
Sbjct: 329 FKGNKESTMICAGPKHIQGEKVSDA-VETY 357


>gi|148539940 zinc finger protein 134 [Homo sapiens]
          Length = 427

 Score = 28.9 bits (63), Expect = 4.2
 Identities = 19/61 (31%), Positives = 26/61 (42%)

Query: 67  AWIGPETMHLVSESSSQVLWAISSAISVAFFALSGIAAQLLNALGLAGDYLAQGLKLSPG 126
           AW GP   H V +  S    +IS A+S    + +G+ AQ      + G  L   L L   
Sbjct: 9   AWTGPGCWHEVKDEESSSEQSISIAVSHVNTSKAGLPAQTALPCDICGPILKDILHLDEH 68

Query: 127 Q 127
           Q
Sbjct: 69  Q 69


>gi|115583677 sodium channel, voltage-gated, type I, alpha [Homo
            sapiens]
          Length = 1998

 Score = 28.5 bits (62), Expect = 5.5
 Identities = 35/136 (25%), Positives = 61/136 (44%), Gaps = 16/136 (11%)

Query: 73   TMHLVSESSSQVLWAISSAISVAFFALSGIAAQLLNALGLAGDYLAQGLKLSPGQVQTFL 132
            TM + ++  S+ +  I S I++ F  L      +L  + L   Y   G  +    V    
Sbjct: 1546 TMMVETDDQSEYVTTILSRINLVFIVLF-TGECVLKLISLRHYYFTIGWNIFDFVVVILS 1604

Query: 133  LWG---AGALVVYWLLSLLLGLV-LALLGRILW------GLKLVIFLAGFVALMRSVPDP 182
            + G   A  +  Y++   L  ++ LA +GRIL       G++ ++F     ALM S+P  
Sbjct: 1605 IVGMFLAELIEKYFVSPTLFRVIRLARIGRILRLIKGAKGIRTLLF-----ALMMSLPAL 1659

Query: 183  STRALLLLALLILYAL 198
                LLL  ++ +YA+
Sbjct: 1660 FNIGLLLFLVMFIYAI 1675


>gi|52353302 transmembrane protein 198 [Homo sapiens]
          Length = 360

 Score = 28.5 bits (62), Expect = 5.5
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 3/63 (4%)

Query: 91  AISVAFFALSGIAAQLLNALGLAGDYLAQGLKLSPGQVQTFLLWGAGALVVYWLLSLLLG 150
           A +V   AL   AA     L L G Y+ + L+ +P      L W + AL+  W L  L+G
Sbjct: 175 ATAVTGAALIATAADYFAELLLLGRYVVERLRAAPVPP---LCWRSWALLALWPLLSLMG 231

Query: 151 LVL 153
           +++
Sbjct: 232 VLV 234


>gi|213972619 ATPase type 13A2 isoform 2 [Homo sapiens]
          Length = 1175

 Score = 28.1 bits (61), Expect = 7.2
 Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 19/93 (20%)

Query: 151  LVLALLGRILWGLKLVIFLAGFVALMRSVPDPSTRALLLLALLI---------------L 195
            + LALL  +L GL LV  L      +R++ D   + LLL  + +               L
Sbjct: 1078 VALALLSSVLVGLVLVPGLLQGPLALRNITDTGFKLLLLGLVTLNFVGAFMLESVLDQCL 1137

Query: 196  YALLSRLTGSRASGAQLEAKVRGLERQVEELRW 228
             A L RL   RAS    + + + LER++ E  W
Sbjct: 1138 PACLRRLRPKRAS----KKRFKQLERELAEQPW 1166


>gi|13435129 ATPase type 13A2 isoform 1 [Homo sapiens]
          Length = 1180

 Score = 28.1 bits (61), Expect = 7.2
 Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 19/93 (20%)

Query: 151  LVLALLGRILWGLKLVIFLAGFVALMRSVPDPSTRALLLLALLI---------------L 195
            + LALL  +L GL LV  L      +R++ D   + LLL  + +               L
Sbjct: 1083 VALALLSSVLVGLVLVPGLLQGPLALRNITDTGFKLLLLGLVTLNFVGAFMLESVLDQCL 1142

Query: 196  YALLSRLTGSRASGAQLEAKVRGLERQVEELRW 228
             A L RL   RAS    + + + LER++ E  W
Sbjct: 1143 PACLRRLRPKRAS----KKRFKQLERELAEQPW 1171


>gi|9955963 ATP-binding cassette, sub-family B, member 6 [Homo
           sapiens]
          Length = 842

 Score = 28.1 bits (61), Expect = 7.2
 Identities = 30/91 (32%), Positives = 38/91 (41%), Gaps = 18/91 (19%)

Query: 132 LLWGAGALVVYWLLSLLLGLVLALLGRILWGLKLVIFLAGFVALMRSVPDPSTRALLLLA 191
           L WGAG  +  ++L LLL  + A L         +  LAG V   R  P PS        
Sbjct: 62  LSWGAGPRISPYVLQLLLATLQAALP--------LAGLAGRVGTARGAPLPS-------- 105

Query: 192 LLILYALLSRLTGSRASGAQLEAKVRGLERQ 222
            L+L ++L  L G  A G  L    R   RQ
Sbjct: 106 YLLLASVLESLAG--ACGLWLLVVERSQARQ 134


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.136    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,885,768
Number of Sequences: 37866
Number of extensions: 296813
Number of successful extensions: 1647
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1573
Number of HSP's gapped (non-prelim): 91
length of query: 243
length of database: 18,247,518
effective HSP length: 99
effective length of query: 144
effective length of database: 14,498,784
effective search space: 2087824896
effective search space used: 2087824896
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.