Guide to the Human Genome
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Name: BRI3BP Sequence: fasta or formatted (251aa) NCBI GI: 19923665
Description:

BRI3-binding protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8         17           2
 C cysteine            0.8          2           1
 D aspartate           2.4          6           1
 E glutamate           5.2         13           2
 F phenylalanine       6.4         16           2
 G glycine             8.0         20           2
 H histidine           1.2          3           1
 I isoleucine          1.2          3           1
 K lysine              3.2          8           1
 L leucine            17.5         44          11
 M methionine          2.0          5           1
 N asparagine          3.6          9           1
 P proline             4.4         11           1
 Q glutamine           2.0          5           1
 R arginine            6.8         17           2
 S serine             10.0         25           3
 T threonine           3.2          8           1
 V valine             10.8         27           2
 W tryptophan          2.0          5           1
 Y tyrosine            2.8          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   BRI3-binding protein 
TMEM109               0.055   transmembrane protein 109 
CASQ1                 0.030   calsequestrin 1 
TM7SF2                0.015   transmembrane 7 superfamily member 2 
LTBP3                 0.015   latent transforming growth factor beta binding prot...
LTBP3                 0.015   latent transforming growth factor beta binding prote...
THSD7A                0.013   thrombospondin, type I, domain containing 7A 
SDC3                  0.011   syndecan 3 
CHST2                 0.011   carbohydrate (N-acetylglucosamine-6-O) sulfotransfer...
ADAMTS7               0.011   ADAM metallopeptidase with thrombospondin type 1 mot...
MED15                 0.011   mediator complex subunit 15 isoform a 
MED15                 0.011   mediator complex subunit 15 isoform b 
CNPY3                 0.011   trinucleotide repeat containing 5 
APH1A                 0.009   anterior pharynx defective 1 homolog A isoform 1 [H...
APH1A                 0.009   anterior pharynx defective 1 homolog A isoform 2 [H...
ABHD15                0.009   abhydrolase domain containing 15 
SLC9A7                0.009   solute carrier family 9, member 7 
KCNG1                 0.009   potassium voltage-gated channel, subfamily G, member...
SEMA7A                0.009   semaphorin 7A isoform 1 preproprotein 
SEMA7A                0.009   semaphorin 7A isoform 2 preproprotein 
MLL2                  0.009   myeloid/lymphoid or mixed-lineage leukemia 2 
BST1                  0.009   bone marrow stromal cell antigen 1 precursor 
DCHS1                 0.009   dachsous 1 precursor 
KIF20A                0.006   kinesin family member 20A 
RPGRIP1               0.006   retinitis pigmentosa GTPase regulator interacting p...
XKR4                  0.006   XK, Kell blood group complex subunit-related family,...
SHBG                  0.006   sex hormone-binding globulin isoform 3 precursor [H...
SHBG                  0.006   sex hormone-binding globulin isoform 2 precursor [H...
SHBG                  0.006   sex hormone-binding globulin isoform 1 precursor [Hom...
SHBG                  0.006   sex hormone-binding globulin isoform 4 precursor [H...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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