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Search of human proteins with 109148508
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|109148508 otubain 1 [Homo sapiens]
(271 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|109148508 otubain 1 [Homo sapiens] 545 e-155
gi|12962939 OTU domain, ubiquitin aldehyde binding 2 [Homo sapiens] 222 3e-58
gi|222537714 taxilin beta [Homo sapiens] 32 0.45
gi|118498356 kinectin 1 isoform a [Homo sapiens] 32 0.59
gi|118498368 kinectin 1 isoform c [Homo sapiens] 32 0.59
gi|33620775 kinectin 1 isoform a [Homo sapiens] 32 0.59
gi|38569484 kinesin family member 21A [Homo sapiens] 32 0.59
gi|157419126 laminin, alpha 4 isoform 2 precursor [Homo sapiens] 31 1.3
gi|157419124 laminin, alpha 4 isoform 1 precursor [Homo sapiens] 31 1.3
gi|157419122 laminin, alpha 4 isoform 2 precursor [Homo sapiens] 31 1.3
gi|58535453 CDK5 regulatory subunit associated protein 2 isoform... 30 1.7
gi|58535451 CDK5 regulatory subunit associated protein 2 isoform... 30 1.7
gi|217272804 hyaluronan-mediated motility receptor isoform d [Ho... 30 2.2
gi|217272802 hyaluronan-mediated motility receptor isoform a [Ho... 30 2.2
gi|217416398 hyaluronan-mediated motility receptor isoform c [Ho... 30 2.2
gi|217416394 hyaluronan-mediated motility receptor isoform b [Ho... 30 2.2
gi|156104874 envoplakin [Homo sapiens] 30 2.2
gi|153945715 myosin VC [Homo sapiens] 30 2.2
gi|118498362 kinectin 1 isoform b [Homo sapiens] 30 2.9
gi|55770834 centromere protein F [Homo sapiens] 29 3.8
gi|7706200 mesenchymal stem cell protein DSCD75 [Homo sapiens] 29 3.8
gi|154350220 DNA polymerase iota [Homo sapiens] 29 5.0
gi|223941923 OTU domain containing 1 [Homo sapiens] 28 6.5
gi|32698700 PHD finger protein 8 [Homo sapiens] 28 6.5
gi|71774197 ubiquitin specific protease 47 [Homo sapiens] 28 6.5
>gi|109148508 otubain 1 [Homo sapiens]
Length = 271
Score = 545 bits (1404), Expect = e-155
Identities = 271/271 (100%), Positives = 271/271 (100%)
Query: 1 MAAEEPQQQKQEPLGSDSEGVNCLAYDEAIMAQQDRIQQEIAVQNPLVSERLELSVLYKE 60
MAAEEPQQQKQEPLGSDSEGVNCLAYDEAIMAQQDRIQQEIAVQNPLVSERLELSVLYKE
Sbjct: 1 MAAEEPQQQKQEPLGSDSEGVNCLAYDEAIMAQQDRIQQEIAVQNPLVSERLELSVLYKE 60
Query: 61 YAEDDNIYQQKIKDLHKKYSYIRKTRPDGNCFYRAFGFSHLEALLDDSKELQRFKAVSAK 120
YAEDDNIYQQKIKDLHKKYSYIRKTRPDGNCFYRAFGFSHLEALLDDSKELQRFKAVSAK
Sbjct: 61 YAEDDNIYQQKIKDLHKKYSYIRKTRPDGNCFYRAFGFSHLEALLDDSKELQRFKAVSAK 120
Query: 121 SKEDLVSQGFTEFTIEDFHNTFMDLIEQVEKQTSVADLLASFNDQSTSDYLVVYLRLLTS 180
SKEDLVSQGFTEFTIEDFHNTFMDLIEQVEKQTSVADLLASFNDQSTSDYLVVYLRLLTS
Sbjct: 121 SKEDLVSQGFTEFTIEDFHNTFMDLIEQVEKQTSVADLLASFNDQSTSDYLVVYLRLLTS 180
Query: 181 GYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGE 240
GYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGE
Sbjct: 181 GYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGE 240
Query: 241 GGTTNPHIFPEGSEPKVYLLYRPGHYDILYK 271
GGTTNPHIFPEGSEPKVYLLYRPGHYDILYK
Sbjct: 241 GGTTNPHIFPEGSEPKVYLLYRPGHYDILYK 271
>gi|12962939 OTU domain, ubiquitin aldehyde binding 2 [Homo sapiens]
Length = 234
Score = 222 bits (565), Expect = 3e-58
Identities = 107/224 (47%), Positives = 158/224 (70%), Gaps = 2/224 (0%)
Query: 47 LVSERLELSVLYKEYAEDDNIYQQKIKDLHKKYSYIRKTRPDGNCFYRAFGFSHLEALLD 106
L+SE+ ++ + +++ E+ IY++KI++L K+++ IRKT+ DGNCFYRA G+S+LE+LL
Sbjct: 8 LISEKCDILSILRDHPEN-RIYRRKIEELSKRFTAIRKTKGDGNCFYRALGYSYLESLLG 66
Query: 107 DSKELQRFKAVSAKSKEDLVSQGFTEFTIEDFHNTFMDLIEQVEKQTSVADLLASFNDQS 166
S+E+ +FK ++ DL++ GF E +F N F ++E VEK SV+ LL FNDQS
Sbjct: 67 KSREIFKFKERVLQTPNDLLAAGFEEHKFRNFFNAFYSVVELVEKDGSVSSLLKVFNDQS 126
Query: 167 TSDYLVVYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQA 226
SD++V +LRLLTS +++ + FF HFI+ +K+FC EVEPM E DHI I AL+QA
Sbjct: 127 ASDHIVQFLRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEVEPMATECDHIQITALSQA 186
Query: 227 LSVSIQVEYMDRGEGGTTNPHIFPEGSEPKVYLLYRPGHYDILY 270
LS+++QVEY+D + N H+FPE + P VYLLY+ HY+ILY
Sbjct: 187 LSIALQVEYVDEMD-TALNHHVFPEAATPSVYLLYKTSHYNILY 229
>gi|222537714 taxilin beta [Homo sapiens]
Length = 684
Score = 32.3 bits (72), Expect = 0.45
Identities = 48/189 (25%), Positives = 81/189 (42%), Gaps = 27/189 (14%)
Query: 45 NPLVSERLELSVLYKEYAE---DDNIYQQKIKDLHKKYSYIRKTRP--DGNCFYRAFGFS 99
N L + + L+K+YAE + Q+K+K L KK I+K + G S
Sbjct: 153 NKLQTPEEKFDFLFKKYAELLDEHRTEQKKLKLLQKKQVQIQKEKDQLQGEHSRAILARS 212
Query: 100 HLEALLDDSKELQRF------KAVSAKSKEDLVSQGFTEFTIEDFHNTFMDLIEQVEKQT 153
LE+L +ELQR +A+ +E+ + T F +T D+ Q+E+Q+
Sbjct: 213 KLESL---CRELQRHNKTLKEEALQRAREEEEKRKEIT----SHFQSTLTDIQGQIEQQS 265
Query: 154 SVADLLASFNDQSTSDYLVVYLRLLTSGYLQRE---SKFFEHFIEGGRTVKEFCQQEVEP 210
L N + L L+ + Y RE K F+H E + + + ++ +
Sbjct: 266 ERNMKLCQENTE-----LAEKLKSIIDQYELREEHLDKIFKH-RELQQKLVDAKLEQAQE 319
Query: 211 MCKESDHIH 219
M KE++ H
Sbjct: 320 MMKEAEERH 328
>gi|118498356 kinectin 1 isoform a [Homo sapiens]
Length = 1357
Score = 32.0 bits (71), Expect = 0.59
Identities = 34/145 (23%), Positives = 63/145 (43%), Gaps = 20/145 (13%)
Query: 28 EAIMAQQDRIQQEIAVQNPLVSERLELSVLYKEYAEDDN----IYQQKIKDLHKKYSYIR 83
+A+ + +Q E A Q + S+ EL L K E N + ++K KDL +++
Sbjct: 839 KALKEEIGNVQLEKAQQLSITSKVQELQNLLKGKEEQMNTMKAVLEEKEKDLANTGKWLQ 898
Query: 84 KTRPDGNCFYR---------------AFGFSHLEALLDDSK-ELQRFKAVSAKSKEDLVS 127
+ + A F LE +L + + EL+R +A+ + + DL S
Sbjct: 899 DLQEENESLKAHVQEVAQHNLKEASSASQFEELEIVLKEKENELKRLEAMLKERESDLSS 958
Query: 128 QGFTEFTIEDFHNTFMDLIEQVEKQ 152
+ ++D + F IEQ+++Q
Sbjct: 959 KTQLLQDVQDENKLFKSQIEQLKQQ 983
>gi|118498368 kinectin 1 isoform c [Homo sapiens]
Length = 1300
Score = 32.0 bits (71), Expect = 0.59
Identities = 34/145 (23%), Positives = 63/145 (43%), Gaps = 20/145 (13%)
Query: 28 EAIMAQQDRIQQEIAVQNPLVSERLELSVLYKEYAEDDN----IYQQKIKDLHKKYSYIR 83
+A+ + +Q E A Q + S+ EL L K E N + ++K KDL +++
Sbjct: 839 KALKEEIGNVQLEKAQQLSITSKVQELQNLLKGKEEQMNTMKAVLEEKEKDLANTGKWLQ 898
Query: 84 KTRPDGNCFYR---------------AFGFSHLEALLDDSK-ELQRFKAVSAKSKEDLVS 127
+ + A F LE +L + + EL+R +A+ + + DL S
Sbjct: 899 DLQEENESLKAHVQEVAQHNLKEASSASQFEELEIVLKEKENELKRLEAMLKERESDLSS 958
Query: 128 QGFTEFTIEDFHNTFMDLIEQVEKQ 152
+ ++D + F IEQ+++Q
Sbjct: 959 KTQLLQDVQDENKLFKSQIEQLKQQ 983
>gi|33620775 kinectin 1 isoform a [Homo sapiens]
Length = 1357
Score = 32.0 bits (71), Expect = 0.59
Identities = 34/145 (23%), Positives = 63/145 (43%), Gaps = 20/145 (13%)
Query: 28 EAIMAQQDRIQQEIAVQNPLVSERLELSVLYKEYAEDDN----IYQQKIKDLHKKYSYIR 83
+A+ + +Q E A Q + S+ EL L K E N + ++K KDL +++
Sbjct: 839 KALKEEIGNVQLEKAQQLSITSKVQELQNLLKGKEEQMNTMKAVLEEKEKDLANTGKWLQ 898
Query: 84 KTRPDGNCFYR---------------AFGFSHLEALLDDSK-ELQRFKAVSAKSKEDLVS 127
+ + A F LE +L + + EL+R +A+ + + DL S
Sbjct: 899 DLQEENESLKAHVQEVAQHNLKEASSASQFEELEIVLKEKENELKRLEAMLKERESDLSS 958
Query: 128 QGFTEFTIEDFHNTFMDLIEQVEKQ 152
+ ++D + F IEQ+++Q
Sbjct: 959 KTQLLQDVQDENKLFKSQIEQLKQQ 983
>gi|38569484 kinesin family member 21A [Homo sapiens]
Length = 1661
Score = 32.0 bits (71), Expect = 0.59
Identities = 39/175 (22%), Positives = 73/175 (41%), Gaps = 17/175 (9%)
Query: 4 EEPQQQKQEPLGSDSEGVNCLAYDEAIMAQQD--RIQQEIAVQNPLVSE----RLELSVL 57
EE ++++ + G +S + DE Q D I EIA++ L+ E + L L
Sbjct: 602 EEEEEEEDDIDGGESSDESDSESDEKANYQADLANITCEIAIKQKLIDELENSQKRLQTL 661
Query: 58 YKEYAEDDNIYQQKIKDLHKKYSYIRKTRPDGNCF----YRAFGFSHLEALLDDSKELQR 113
K+Y E + Q KI+D + + + + + + + L +KELQR
Sbjct: 662 KKQYEEKLMMLQHKIRDTQLERDQVLQNLGSVESYSEEKAKKVRSEYEKKLQAMNKELQR 721
Query: 114 FKAVSAKSKEDLVSQGFTEFTIEDFHNTFMD-------LIEQVEKQTSVADLLAS 161
+A + L +Q E ++ M+ L++Q++++ A L S
Sbjct: 722 LQAAQKEHARLLKNQSQYEKQLKKLQQDVMEMKKTKVRLMKQMKEEQEKARLTES 776
>gi|157419126 laminin, alpha 4 isoform 2 precursor [Homo sapiens]
Length = 1816
Score = 30.8 bits (68), Expect = 1.3
Identities = 30/146 (20%), Positives = 51/146 (34%), Gaps = 17/146 (11%)
Query: 83 RKTRPDGNCFYRAFGFSHLEALLDDSKELQRFKAVSAKSKEDLVSQGFTEFTIEDFHNTF 142
R +P+G FY A G LD+ + K + +S + + G + F I T
Sbjct: 1257 RTLQPNGLLFYYASGSDVFSISLDNGTVIMDVKGIKVQSVDKQYNDGLSHFVISSVSPTR 1316
Query: 143 MDLIEQVEK------------QTSVADLLASFNDQSTSDYLVVYLRLLTSGYLQR----- 185
+LI + QT ++ F S + +++ Y R
Sbjct: 1317 YELIVDKSRVGSKNPTKGKIEQTQASEKKFYFGGSPISAQYANFTGCISNAYFTRVDRDV 1376
Query: 186 ESKFFEHFIEGGRTVKEFCQQEVEPM 211
E + F+ + E T C E P+
Sbjct: 1377 EVEDFQRYTEKVHTSLYECPIESSPL 1402
>gi|157419124 laminin, alpha 4 isoform 1 precursor [Homo sapiens]
Length = 1823
Score = 30.8 bits (68), Expect = 1.3
Identities = 30/146 (20%), Positives = 51/146 (34%), Gaps = 17/146 (11%)
Query: 83 RKTRPDGNCFYRAFGFSHLEALLDDSKELQRFKAVSAKSKEDLVSQGFTEFTIEDFHNTF 142
R +P+G FY A G LD+ + K + +S + + G + F I T
Sbjct: 1264 RTLQPNGLLFYYASGSDVFSISLDNGTVIMDVKGIKVQSVDKQYNDGLSHFVISSVSPTR 1323
Query: 143 MDLIEQVEK------------QTSVADLLASFNDQSTSDYLVVYLRLLTSGYLQR----- 185
+LI + QT ++ F S + +++ Y R
Sbjct: 1324 YELIVDKSRVGSKNPTKGKIEQTQASEKKFYFGGSPISAQYANFTGCISNAYFTRVDRDV 1383
Query: 186 ESKFFEHFIEGGRTVKEFCQQEVEPM 211
E + F+ + E T C E P+
Sbjct: 1384 EVEDFQRYTEKVHTSLYECPIESSPL 1409
>gi|157419122 laminin, alpha 4 isoform 2 precursor [Homo sapiens]
Length = 1816
Score = 30.8 bits (68), Expect = 1.3
Identities = 30/146 (20%), Positives = 51/146 (34%), Gaps = 17/146 (11%)
Query: 83 RKTRPDGNCFYRAFGFSHLEALLDDSKELQRFKAVSAKSKEDLVSQGFTEFTIEDFHNTF 142
R +P+G FY A G LD+ + K + +S + + G + F I T
Sbjct: 1257 RTLQPNGLLFYYASGSDVFSISLDNGTVIMDVKGIKVQSVDKQYNDGLSHFVISSVSPTR 1316
Query: 143 MDLIEQVEK------------QTSVADLLASFNDQSTSDYLVVYLRLLTSGYLQR----- 185
+LI + QT ++ F S + +++ Y R
Sbjct: 1317 YELIVDKSRVGSKNPTKGKIEQTQASEKKFYFGGSPISAQYANFTGCISNAYFTRVDRDV 1376
Query: 186 ESKFFEHFIEGGRTVKEFCQQEVEPM 211
E + F+ + E T C E P+
Sbjct: 1377 EVEDFQRYTEKVHTSLYECPIESSPL 1402
>gi|58535453 CDK5 regulatory subunit associated protein 2 isoform b
[Homo sapiens]
Length = 1814
Score = 30.4 bits (67), Expect = 1.7
Identities = 46/207 (22%), Positives = 84/207 (40%), Gaps = 24/207 (11%)
Query: 10 KQEPLGSDSEG-VNCLAYDEAIMAQQDRIQQEIAVQNPLVSERLELSVLYKEYAEDDNIY 68
K++ SD E + L ++ I + QE N L +E ++ L K+ +D Y
Sbjct: 542 KEKKQSSDYEELIQVLKKEQDIYTHLVKSLQESDSINNLQAELNKIFALRKQLEQDVLSY 601
Query: 69 QQKIKDLHKKYSYIRKTRPDGNCFYRAFGFSHLEALLDDSK--ELQRFKAVSAKSKEDLV 126
Q K L ++ S IR+ + Y + S+L L+++ +++ F K K +
Sbjct: 602 QNLRKTLEEQISEIRRREEESFSLY-SDQTSYLSICLEENNRFQVEHFSQEELKKKVSDL 660
Query: 127 SQGFTEFTIEDFH---------------NTFMDLIEQVEKQTSVADLLASFNDQSTSDY- 170
Q E ++ H N F D + E+ +LLAS D+ T
Sbjct: 661 IQLVKELYTDNQHLKKTIFDLSCMGFQGNGFPDRLASTEQ----TELLASKEDEDTIKIG 716
Query: 171 LVVYLRLLTSGYLQRESKFFEHFIEGG 197
+ L+ +LQ+ ++ + +GG
Sbjct: 717 EDDEINFLSDQHLQQSNEIMKDLSKGG 743
>gi|58535451 CDK5 regulatory subunit associated protein 2 isoform a
[Homo sapiens]
Length = 1893
Score = 30.4 bits (67), Expect = 1.7
Identities = 46/207 (22%), Positives = 84/207 (40%), Gaps = 24/207 (11%)
Query: 10 KQEPLGSDSEG-VNCLAYDEAIMAQQDRIQQEIAVQNPLVSERLELSVLYKEYAEDDNIY 68
K++ SD E + L ++ I + QE N L +E ++ L K+ +D Y
Sbjct: 542 KEKKQSSDYEELIQVLKKEQDIYTHLVKSLQESDSINNLQAELNKIFALRKQLEQDVLSY 601
Query: 69 QQKIKDLHKKYSYIRKTRPDGNCFYRAFGFSHLEALLDDSK--ELQRFKAVSAKSKEDLV 126
Q K L ++ S IR+ + Y + S+L L+++ +++ F K K +
Sbjct: 602 QNLRKTLEEQISEIRRREEESFSLY-SDQTSYLSICLEENNRFQVEHFSQEELKKKVSDL 660
Query: 127 SQGFTEFTIEDFH---------------NTFMDLIEQVEKQTSVADLLASFNDQSTSDY- 170
Q E ++ H N F D + E+ +LLAS D+ T
Sbjct: 661 IQLVKELYTDNQHLKKTIFDLSCMGFQGNGFPDRLASTEQ----TELLASKEDEDTIKIG 716
Query: 171 LVVYLRLLTSGYLQRESKFFEHFIEGG 197
+ L+ +LQ+ ++ + +GG
Sbjct: 717 EDDEINFLSDQHLQQSNEIMKDLSKGG 743
>gi|217272804 hyaluronan-mediated motility receptor isoform d [Homo
sapiens]
Length = 638
Score = 30.0 bits (66), Expect = 2.2
Identities = 36/156 (23%), Positives = 68/156 (43%), Gaps = 26/156 (16%)
Query: 35 DRIQQEIAVQNPLVSERLELSVLYKEYAEDDNIYQQKIKD------------------LH 76
D++QQ+ LV + E + K AE+ + ++K+K L
Sbjct: 300 DKLQQKEEQAERLVKQLEEEA---KSRAEELKLLEEKLKGKEAELEKSSAAHTQATLLLQ 356
Query: 77 KKYSYIRKTRPDGNC---FYRAFGFSHLEALLDDSKELQRFKAVSAKSKEDLVSQGF-TE 132
+KY + ++ D Y+A S +E L ++ LQ A + K+ ED+ Q TE
Sbjct: 357 EKYDSMVQSLEDVTAQFESYKALTASEIEDLKLENSSLQEKAAKAGKNAEDVQHQILATE 416
Query: 133 FTIEDFHNTFMDL-IEQVEKQTSVADLLASFNDQST 167
+ +++ +DL + K+T + ++ SF + T
Sbjct: 417 SSNQEYVRMLLDLQTKSALKETEIKEITVSFLQKIT 452
>gi|217272802 hyaluronan-mediated motility receptor isoform a [Homo
sapiens]
Length = 725
Score = 30.0 bits (66), Expect = 2.2
Identities = 36/156 (23%), Positives = 68/156 (43%), Gaps = 26/156 (16%)
Query: 35 DRIQQEIAVQNPLVSERLELSVLYKEYAEDDNIYQQKIKD------------------LH 76
D++QQ+ LV + E + K AE+ + ++K+K L
Sbjct: 387 DKLQQKEEQAERLVKQLEEEA---KSRAEELKLLEEKLKGKEAELEKSSAAHTQATLLLQ 443
Query: 77 KKYSYIRKTRPDGNC---FYRAFGFSHLEALLDDSKELQRFKAVSAKSKEDLVSQGF-TE 132
+KY + ++ D Y+A S +E L ++ LQ A + K+ ED+ Q TE
Sbjct: 444 EKYDSMVQSLEDVTAQFESYKALTASEIEDLKLENSSLQEKAAKAGKNAEDVQHQILATE 503
Query: 133 FTIEDFHNTFMDL-IEQVEKQTSVADLLASFNDQST 167
+ +++ +DL + K+T + ++ SF + T
Sbjct: 504 SSNQEYVRMLLDLQTKSALKETEIKEITVSFLQKIT 539
>gi|217416398 hyaluronan-mediated motility receptor isoform c [Homo
sapiens]
Length = 709
Score = 30.0 bits (66), Expect = 2.2
Identities = 36/156 (23%), Positives = 68/156 (43%), Gaps = 26/156 (16%)
Query: 35 DRIQQEIAVQNPLVSERLELSVLYKEYAEDDNIYQQKIKD------------------LH 76
D++QQ+ LV + E + K AE+ + ++K+K L
Sbjct: 371 DKLQQKEEQAERLVKQLEEEA---KSRAEELKLLEEKLKGKEAELEKSSAAHTQATLLLQ 427
Query: 77 KKYSYIRKTRPDGNC---FYRAFGFSHLEALLDDSKELQRFKAVSAKSKEDLVSQGF-TE 132
+KY + ++ D Y+A S +E L ++ LQ A + K+ ED+ Q TE
Sbjct: 428 EKYDSMVQSLEDVTAQFESYKALTASEIEDLKLENSSLQEKAAKAGKNAEDVQHQILATE 487
Query: 133 FTIEDFHNTFMDL-IEQVEKQTSVADLLASFNDQST 167
+ +++ +DL + K+T + ++ SF + T
Sbjct: 488 SSNQEYVRMLLDLQTKSALKETEIKEITVSFLQKIT 523
>gi|217416394 hyaluronan-mediated motility receptor isoform b [Homo
sapiens]
Length = 724
Score = 30.0 bits (66), Expect = 2.2
Identities = 36/156 (23%), Positives = 68/156 (43%), Gaps = 26/156 (16%)
Query: 35 DRIQQEIAVQNPLVSERLELSVLYKEYAEDDNIYQQKIKD------------------LH 76
D++QQ+ LV + E + K AE+ + ++K+K L
Sbjct: 386 DKLQQKEEQAERLVKQLEEEA---KSRAEELKLLEEKLKGKEAELEKSSAAHTQATLLLQ 442
Query: 77 KKYSYIRKTRPDGNC---FYRAFGFSHLEALLDDSKELQRFKAVSAKSKEDLVSQGF-TE 132
+KY + ++ D Y+A S +E L ++ LQ A + K+ ED+ Q TE
Sbjct: 443 EKYDSMVQSLEDVTAQFESYKALTASEIEDLKLENSSLQEKAAKAGKNAEDVQHQILATE 502
Query: 133 FTIEDFHNTFMDL-IEQVEKQTSVADLLASFNDQST 167
+ +++ +DL + K+T + ++ SF + T
Sbjct: 503 SSNQEYVRMLLDLQTKSALKETEIKEITVSFLQKIT 538
>gi|156104874 envoplakin [Homo sapiens]
Length = 2033
Score = 30.0 bits (66), Expect = 2.2
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 44 QNP-LVSERLELSVLYKEYAEDDNIYQQKIKDLHKKYSYIRKTRPDGNCFYRAFGFSHLE 102
Q+P L+ E L L +E + +++ DLH KYS + K RP R ++
Sbjct: 1144 QDPGLLQESSRLRSLLEEERTKNATLARELSDLHSKYSVVEKQRPKVQLQERVHEIFQVD 1203
Query: 103 ALLDDSKELQRFKA 116
+ +E+ R KA
Sbjct: 1204 P--ETEQEITRLKA 1215
>gi|153945715 myosin VC [Homo sapiens]
Length = 1742
Score = 30.0 bits (66), Expect = 2.2
Identities = 49/208 (23%), Positives = 81/208 (38%), Gaps = 22/208 (10%)
Query: 36 RIQQEIAVQNP----LVSERLELSVLYKEYAEDDNIYQQKIKDLHKKYSYIRKTRPDGNC 91
R+Q+++ QN LV + L+ L A D Q+ +L K ++ R
Sbjct: 893 RLQKKLEDQNKENHGLVEKLTSLAALR---AGDVEKIQKLEAELEKAATHRRN------- 942
Query: 92 FYRAFGFSHLEALLDDSKELQRFKAVSAKSKED--LVSQGFTEFTIEDFHNTFMDLIEQV 149
Y G + +A+ + +LQ+ + KE L Q TE E N L + V
Sbjct: 943 -YEEKGKRYRDAVEEKLAKLQKHNSELETQKEQIQLKLQEKTEELKEKMDNLTKQLFDDV 1001
Query: 150 EKQTSVADLLASFNDQSTSDYLVVYLRLLTS-GYLQRESKFFEHFIEGGRTVKEFCQQEV 208
+K+ LL + T DY L L+ E +H +EG + + EV
Sbjct: 1002 QKEERQRMLLEKSFELKTQDYEKQIQSLKEEIKALKDEKMQLQHLVEGEHVTSDGLKAEV 1061
Query: 209 EPMCKE----SDHIHIIALAQALSVSIQ 232
+ K+ S+ I L QA + ++
Sbjct: 1062 ARLSKQVKTISEFEKEIELLQAQKIDVE 1089
>gi|118498362 kinectin 1 isoform b [Homo sapiens]
Length = 1306
Score = 29.6 bits (65), Expect = 2.9
Identities = 32/134 (23%), Positives = 58/134 (43%), Gaps = 20/134 (14%)
Query: 39 QEIAVQNPLVSERLELSVLYKEYAEDDN----IYQQKIKDLHKKYSYIRKTRPDGNCFYR 94
+E VQ + S+ EL L K E N + ++K KDL +++ + +
Sbjct: 827 KEKTVQLSITSKVQELQNLLKGKEEQMNTMKAVLEEKEKDLANTGKWLQDLQEENESLKA 886
Query: 95 ---------------AFGFSHLEALLDDSK-ELQRFKAVSAKSKEDLVSQGFTEFTIEDF 138
A F LE +L + + EL+R +A+ + + DL S+ ++D
Sbjct: 887 HVQEVAQHNLKEASSASQFEELEIVLKEKENELKRLEAMLKERESDLSSKTQLLQDVQDE 946
Query: 139 HNTFMDLIEQVEKQ 152
+ F IEQ+++Q
Sbjct: 947 NKLFKSQIEQLKQQ 960
>gi|55770834 centromere protein F [Homo sapiens]
Length = 3114
Score = 29.3 bits (64), Expect = 3.8
Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 14/82 (17%)
Query: 4 EEPQQQKQEPLGSDSEGVN-----CLAYDEAIMAQQDRIQQEIAVQNP--------LVSE 50
EE +K+ P + ++GV C Y +++ +++++ + ++N L SE
Sbjct: 1533 EENLTRKETP-SAPAKGVEELESLCEVYRQSLEKLEEKMESQGIMKNKEIQELEQLLSSE 1591
Query: 51 RLELSVLYKEYAEDDNIYQQKI 72
R EL L K+Y ++ +QQK+
Sbjct: 1592 RQELDCLRKQYLSENEQWQQKL 1613
>gi|7706200 mesenchymal stem cell protein DSCD75 [Homo sapiens]
Length = 208
Score = 29.3 bits (64), Expect = 3.8
Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 8/98 (8%)
Query: 139 HNTFMDLIEQVEKQTSVADLLASFNDQSTSDYLVVYLRLLTSGYLQRESKFFEHFIEGG- 197
H + L+E E +T L ++D++ YL L G++ +F +H +
Sbjct: 107 HRRSLRLLEPFEVRTR----LLGWDDRAF--YLEARFVSLRDGFVCALLRFRQHLLGTSP 160
Query: 198 -RTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVE 234
R V+ CQ+ VEP +D H I+ +A S +++E
Sbjct: 161 ERVVQHLCQRRVEPPELPADLQHWISYNEASSQLLRME 198
>gi|154350220 DNA polymerase iota [Homo sapiens]
Length = 740
Score = 28.9 bits (63), Expect = 5.0
Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 10/96 (10%)
Query: 102 EALLDDSKELQRFKAVSAKSKEDLVSQGFTEFTIEDFHNTFMDLIEQVEK--QTSVADLL 159
+ +L + ++L R++ +S K E L+ + F F+DL E VEK Q +D L
Sbjct: 115 QLVLVNGEDLTRYREMSYKVTE-LLEEFSPVVERLGFDENFVDLTEMVEKRLQQLQSDEL 173
Query: 160 AS-------FNDQSTSDYLVVYLRLLTSGYLQRESK 188
++ +N+QS + V+++RLL + E +
Sbjct: 174 SAVTVSGHVYNNQSINLLDVLHIRLLVGSQIAAEMR 209
>gi|223941923 OTU domain containing 1 [Homo sapiens]
Length = 481
Score = 28.5 bits (62), Expect = 6.5
Identities = 23/94 (24%), Positives = 35/94 (37%), Gaps = 20/94 (21%)
Query: 2 AAEEPQQQKQEPLGSDSEGVNCLAYDEAIMAQQDRIQQEIAVQNPLVSERLELSVLYKEY 61
AA P + + P E A + I+++ D +++A LY
Sbjct: 251 AARRPDPEAEAPPAGSIEAAPSSAAEPVIVSRSDPRDEKLA--------------LYLAE 296
Query: 62 AEDDNIYQQKIKDLHKKYSYIRKTRPDGNCFYRA 95
E + Y L ++ Y PDGNC YRA
Sbjct: 297 VEKQDKY------LRQRNKYRFHIIPDGNCLYRA 324
>gi|32698700 PHD finger protein 8 [Homo sapiens]
Length = 1024
Score = 28.5 bits (62), Expect = 6.5
Identities = 29/130 (22%), Positives = 59/130 (45%), Gaps = 16/130 (12%)
Query: 148 QVEKQTSVADLLASFNDQSTSDYLVVYLRLLTSGYLQRESKFFEHFIEGGRTV----KEF 203
++EK+ S ADL N ++ Y+ ++ + G + + + GG+ + + +
Sbjct: 348 EIEKRLSTADLFRFPNFETICWYVGKHILDIFRGLRENRRHPASYLVHGGKALNLAFRAW 407
Query: 204 CQQEVEPMCKES--DHIHIIALAQALSVSIQV--EYMDRGEGGTTN----PHIFPEGSEP 255
++E P ++ + + + L + L+ I++ + + G T+N IFP GS P
Sbjct: 408 TRKEALPDHEDEIPETVRTVQLIKDLAREIRLVEDIFQQNVGKTSNIFGLQRIFPAGSIP 467
Query: 256 KVYLLYRPGH 265
L RP H
Sbjct: 468 ----LTRPAH 473
>gi|71774197 ubiquitin specific protease 47 [Homo sapiens]
Length = 1287
Score = 28.5 bits (62), Expect = 6.5
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Query: 127 SQGFTEFTIEDFHNTFMDLIEQVEKQTSVADLLASFNDQSTSDYLVVYLRLLTSGY 182
S+ + + +++ D +EQ KQT ADL+ D Y+R L GY
Sbjct: 177 SEAWQQHDVQELCRVMFDALEQKWKQTEQADLINELYQGKLKD----YVRCLECGY 228
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.134 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,963,523
Number of Sequences: 37866
Number of extensions: 409867
Number of successful extensions: 1262
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1250
Number of HSP's gapped (non-prelim): 27
length of query: 271
length of database: 18,247,518
effective HSP length: 101
effective length of query: 170
effective length of database: 14,423,052
effective search space: 2451918840
effective search space used: 2451918840
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.