OTUB1 366

Name: OTUB1	Sequence: fasta or formatted (271aa)		NCBI GI: 109148508
Description: otubain 1		Referenced in: Ubiquitin and Related Protein Modifications
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.9 16 2 C cysteine 1.5 4 1 D aspartate 6.6 18 2 E glutamate 10.3 28 2 F phenylalanine 5.2 14 2 G glycine 4.8 13 2 H histidine 3.0 8 1 I isoleucine 5.5 15 2 K lysine 6.3 17 2 L leucine 9.2 25 2 M methionine 1.8 5 1 N asparagine 2.6 7 1 P proline 3.3 9 1 Q glutamine 7.7 21 3 R arginine 4.1 11 1 S serine 7.4 20 1 T threonine 3.7 10 2 V valine 5.5 15 2 W tryptophan 0.0 0 0 Y tyrosine 5.5 15 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 otubain 1 OTUB2 0.379 OTU domain, ubiquitin aldehyde binding 2 TXLNB 0.013 taxilin beta KTN1 0.013 kinectin 1 isoform a KTN1 0.013 kinectin 1 isoform c KTN1 0.013 kinectin 1 isoform a KIF21A 0.013 kinesin family member 21A LAMA4 0.012 laminin, alpha 4 isoform 2 precursor LAMA4 0.012 laminin, alpha 4 isoform 1 precursor LAMA4 0.012 laminin, alpha 4 isoform 2 precursor CDK5RAP2 0.010 CDK5 regulatory subunit associated protein 2 isoform... CDK5RAP2 0.010 CDK5 regulatory subunit associated protein 2 isoform... HMMR 0.010 hyaluronan-mediated motility receptor isoform d [Ho... HMMR 0.010 hyaluronan-mediated motility receptor isoform a [Ho... HMMR 0.010 hyaluronan-mediated motility receptor isoform c [Ho... HMMR 0.010 hyaluronan-mediated motility receptor isoform b [Ho... EVPL 0.010 envoplakin MYO5C 0.010 myosin VC KTN1 0.010 kinectin 1 isoform b CENPF 0.008 centromere protein F C8orf55 0.008 mesenchymal stem cell protein DSCD75 POLI 0.008 DNA polymerase iota OTUD1 0.006 OTU domain containing 1 PHF8 0.006 PHD finger protein 8 USP47 0.006 ubiquitin specific protease 47 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.