Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 4557489
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4557489 cone-rod homeobox protein [Homo sapiens]
(299 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4557489 cone-rod homeobox protein [Homo sapiens] 612 e-176
gi|27436933 orthodenticle homeobox 2 isoform b [Homo sapiens] 266 2e-71
gi|11119420 orthodenticle homeobox 2 isoform a [Homo sapiens] 259 3e-69
gi|20070107 orthodenticle homeobox 1 [Homo sapiens] 224 9e-59
gi|61969666 arginine-fifty homeobox [Homo sapiens] 136 3e-32
gi|12707580 paired-like homeobox 2b [Homo sapiens] 111 9e-25
gi|46249382 paired-like homeobox 2a [Homo sapiens] 110 2e-24
gi|27436936 diencephalon/mesencephalon homeobox 1 isoform a [Hom... 107 1e-23
gi|22218349 diencephalon/mesencephalon homeobox 1 isoform b [Hom... 103 2e-22
gi|4826912 paired-like homeodomain 3 [Homo sapiens] 100 1e-21
gi|24497589 aristaless related homeobox [Homo sapiens] 100 2e-21
gi|126116581 retina and anterior neural fold homeobox [Homo sapi... 97 2e-20
gi|122937484 dorsal root ganglia homeobox [Homo sapiens] 97 2e-20
gi|4505619 paired box 7 isoform 1 [Homo sapiens] 96 3e-20
gi|7524359 paired box 7 isoform 2 [Homo sapiens] 96 3e-20
gi|207029223 paired box 7 isoform 3 [Homo sapiens] 96 3e-20
gi|189083681 paired box gene 6 isoform a [Homo sapiens] 96 3e-20
gi|4580424 paired box gene 6 isoform b [Homo sapiens] 96 3e-20
gi|4505615 paired box gene 6 isoform a [Homo sapiens] 96 3e-20
gi|23592228 extraembryonic, spermatogenesis, homeobox 1-like [Ho... 96 4e-20
gi|113204604 aristaless-like homeobox 3 [Homo sapiens] 94 1e-19
gi|7706659 paired related homeobox 2 [Homo sapiens] 94 2e-19
gi|55743092 aristaless-like homeobox 4 [Homo sapiens] 92 4e-19
gi|31563340 paired box 3 isoform PAX3 [Homo sapiens] 92 7e-19
gi|188219638 paired box 3 isoform PAX3i [Homo sapiens] 91 1e-18
gi|31563344 paired box 3 isoform PAX3e [Homo sapiens] 91 1e-18
gi|31563342 paired box 3 isoform PAX3d [Homo sapiens] 91 1e-18
gi|31563348 paired box 3 isoform PAX3g [Homo sapiens] 88 1e-17
gi|31563346 paired box 3 isoform PAX3h [Homo sapiens] 88 1e-17
gi|154813201 cartilage paired-class homeoprotein 1 [Homo sapiens] 88 1e-17
>gi|4557489 cone-rod homeobox protein [Homo sapiens]
Length = 299
Score = 612 bits (1579), Expect = e-176
Identities = 299/299 (100%), Positives = 299/299 (100%)
Query: 1 MMAYMNPGPHYSVNALALSGPSVDLMHQAVPYPSAPRKQRRERTTFTRSQLEELEALFAK 60
MMAYMNPGPHYSVNALALSGPSVDLMHQAVPYPSAPRKQRRERTTFTRSQLEELEALFAK
Sbjct: 1 MMAYMNPGPHYSVNALALSGPSVDLMHQAVPYPSAPRKQRRERTTFTRSQLEELEALFAK 60
Query: 61 TQYPDVYAREEVALKINLPESRVQVWFKNRRAKCRQQRQQQKQQQQPPGGQAKARPAKRK 120
TQYPDVYAREEVALKINLPESRVQVWFKNRRAKCRQQRQQQKQQQQPPGGQAKARPAKRK
Sbjct: 61 TQYPDVYAREEVALKINLPESRVQVWFKNRRAKCRQQRQQQKQQQQPPGGQAKARPAKRK 120
Query: 121 AGTSPRPSTDVCPDPLGISDSYSPPLPGPSGSPTTAVATVSIWSPASESPLPEAQRAGLV 180
AGTSPRPSTDVCPDPLGISDSYSPPLPGPSGSPTTAVATVSIWSPASESPLPEAQRAGLV
Sbjct: 121 AGTSPRPSTDVCPDPLGISDSYSPPLPGPSGSPTTAVATVSIWSPASESPLPEAQRAGLV 180
Query: 181 ASGPSLTSAPYAMTYAPASAFCSSPSAYGSPSSYFSGLDPYLSPMVPQLGGPALSPLSGP 240
ASGPSLTSAPYAMTYAPASAFCSSPSAYGSPSSYFSGLDPYLSPMVPQLGGPALSPLSGP
Sbjct: 181 ASGPSLTSAPYAMTYAPASAFCSSPSAYGSPSSYFSGLDPYLSPMVPQLGGPALSPLSGP 240
Query: 241 SVGPSLAQSPTSLSGQSYGAYSPVDSLEFKDPTGTWKFTYNPMDPLDYKDQSAWKFQIL 299
SVGPSLAQSPTSLSGQSYGAYSPVDSLEFKDPTGTWKFTYNPMDPLDYKDQSAWKFQIL
Sbjct: 241 SVGPSLAQSPTSLSGQSYGAYSPVDSLEFKDPTGTWKFTYNPMDPLDYKDQSAWKFQIL 299
>gi|27436933 orthodenticle homeobox 2 isoform b [Homo sapiens]
Length = 289
Score = 266 bits (680), Expect = 2e-71
Identities = 158/309 (51%), Positives = 197/309 (63%), Gaps = 30/309 (9%)
Query: 1 MMAYMNPGPHYSVNALALSGPSVDLMHQAVPYPSAPRKQRRERTTFTRSQLEELEALFAK 60
MM+Y+ P Y+VN L+L+ +DL+H +V YP+ PRKQRRERTTFTR+QL+ LEALFAK
Sbjct: 1 MMSYLKQPP-YAVNGLSLTTSGMDLLHPSVGYPATPRKQRRERTTFTRAQLDVLEALFAK 59
Query: 61 TQYPDVYAREEVALKINLPESRVQVWFKNRRAKCRQQRQQQKQQQQPPGGQAKARPAKRK 120
T+YPD++ REEVALKINLPESRVQVWFKNRRAKCRQQ QQQQ GGQ K RPAK+K
Sbjct: 60 TRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQ-----QQQQQNGGQNKVRPAKKK 114
Query: 121 AGTSPRPSTDVCPDPLGISDSYSPPLPGPSGSPTTAVATVSIWSPASESPLPEAQRAGLV 180
+ S++ G S ++PP + ++ A VSIWSPAS SPL + +
Sbjct: 115 TSPAREVSSE-----SGTSGQFTPPSSTSVPTIASSSAPVSIWSPASISPLSDP-----L 164
Query: 181 ASGPSLTSAPYAMTYAPASAFCSSPSAYGSPSSYFSGLD--PYLSPMVPQLGGP--ALSP 236
++ S Y MTY AS + Y +SYF G+D YL+PM QL GP LSP
Sbjct: 165 STSSSCMQRSYPMTYTQASGY---SQGYAGSTSYFGGMDCGSYLTPMHHQLPGPGATLSP 221
Query: 237 LSGPSVGPSLAQSPTSLSGQSYGA-----YSPVDSLEFKDPTGTWKFTYNPMDPLDYKDQ 291
+ +V L QSP SLS Q YGA S D L++KD T +WK +N D LDYKDQ
Sbjct: 222 MGTNAVTSHLNQSPASLSTQGYGASSLGFNSTTDCLDYKDQTASWKLNFN-ADCLDYKDQ 280
Query: 292 -SAWKFQIL 299
S+WKFQ+L
Sbjct: 281 TSSWKFQVL 289
>gi|11119420 orthodenticle homeobox 2 isoform a [Homo sapiens]
Length = 297
Score = 259 bits (661), Expect = 3e-69
Identities = 158/317 (49%), Positives = 197/317 (62%), Gaps = 38/317 (11%)
Query: 1 MMAYMNPGPHYSVNALALSGPSVDLMHQAVPYP--------SAPRKQRRERTTFTRSQLE 52
MM+Y+ P Y+VN L+L+ +DL+H +V YP + PRKQRRERTTFTR+QL+
Sbjct: 1 MMSYLKQPP-YAVNGLSLTTSGMDLLHPSVGYPGPWASCPAATPRKQRRERTTFTRAQLD 59
Query: 53 ELEALFAKTQYPDVYAREEVALKINLPESRVQVWFKNRRAKCRQQRQQQKQQQQPPGGQA 112
LEALFAKT+YPD++ REEVALKINLPESRVQVWFKNRRAKCRQQ QQQQ GGQ
Sbjct: 60 VLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQ-----QQQQQNGGQN 114
Query: 113 KARPAKRKAGTSPRPSTDVCPDPLGISDSYSPPLPGPSGSPTTAVATVSIWSPASESPLP 172
K RPAK+K + S++ G S ++PP + ++ A VSIWSPAS SPL
Sbjct: 115 KVRPAKKKTSPAREVSSE-----SGTSGQFTPPSSTSVPTIASSSAPVSIWSPASISPLS 169
Query: 173 EAQRAGLVASGPSLTSAPYAMTYAPASAFCSSPSAYGSPSSYFSGLD--PYLSPMVPQLG 230
+ +++ S Y MTY AS + Y +SYF G+D YL+PM QL
Sbjct: 170 DP-----LSTSSSCMQRSYPMTYTQASGY---SQGYAGSTSYFGGMDCGSYLTPMHHQLP 221
Query: 231 GP--ALSPLSGPSVGPSLAQSPTSLSGQSYGA-----YSPVDSLEFKDPTGTWKFTYNPM 283
GP LSP+ +V L QSP SLS Q YGA S D L++KD T +WK +N
Sbjct: 222 GPGATLSPMGTNAVTSHLNQSPASLSTQGYGASSLGFNSTTDCLDYKDQTASWKLNFN-A 280
Query: 284 DPLDYKDQ-SAWKFQIL 299
D LDYKDQ S+WKFQ+L
Sbjct: 281 DCLDYKDQTSSWKFQVL 297
>gi|20070107 orthodenticle homeobox 1 [Homo sapiens]
Length = 354
Score = 224 bits (570), Expect = 9e-59
Identities = 152/366 (41%), Positives = 198/366 (54%), Gaps = 79/366 (21%)
Query: 1 MMAYMNPGPHYSVNALALSGPSVDLMHQAVPYPSAPRKQRRERTTFTRSQLEELEALFAK 60
MM+Y+ P Y +N L L+GP++DL+H +V YP+ PRKQRRERTTFTRSQL+ LEALFAK
Sbjct: 1 MMSYLKQPP-YGMNGLGLAGPAMDLLHPSVGYPATPRKQRRERTTFTRSQLDVLEALFAK 59
Query: 61 TQYPDVYAREEVALKINLPESRVQVWFKNRRAKCRQQRQQQKQQQQPPGGQAKARPAKRK 120
T+YPD++ REEVALKINLPESRVQVWFKNRRAKCRQQ+Q G K+RPAK+K
Sbjct: 60 TRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQS--------GSGTKSRPAKKK 111
Query: 121 AG--------------TSPRPSTDVCPDPLGISDSYSP---PLPGPSGSPTTAVATV--- 160
+ T P S+ S S +P G G+P A +++
Sbjct: 112 SSPVRESSGSESSGQFTPPAVSSSASSSSSASSSSANPAAAAAAGLGGNPVAAASSLSTP 171
Query: 161 ---SIWSPASESP--------LPEAQRA--------GLVASGPSLTSAPYAMTYAPASAF 201
SIWSPAS SP +PE A VA+G + +A Y M+Y ++
Sbjct: 172 AASSIWSPASISPGSAPASVSVPEPLAAPSNTSCMQRSVAAGAATAAASYPMSYGQGGSY 231
Query: 202 CSSPSAYGSP-SSYFSGLD--PYLSPM-----VPQLGGPALSPLSGPSVGPSLAQSPTSL 253
Y +P SSYF G+D YL+PM QL A S ++G A P S
Sbjct: 232 ---GQGYPTPSSSYFGGVDCSSYLAPMHSHHHPHQLSPMAPSSMAGHHHHHPHAHHPLSQ 288
Query: 254 SG-----------QSYG----AYSPVDSLEFKDP-----TGTWKFTYNPMDPLDYKDQSA 293
S Q YG A++ D L++K+P + WK +N D LDYKDQ++
Sbjct: 289 SSGHHHHHHHHHHQGYGGSGLAFNSADCLDYKEPGAAAASSAWKLNFNSPDCLDYKDQAS 348
Query: 294 WKFQIL 299
W+FQ+L
Sbjct: 349 WRFQVL 354
>gi|61969666 arginine-fifty homeobox [Homo sapiens]
Length = 315
Score = 136 bits (342), Expect = 3e-32
Identities = 93/239 (38%), Positives = 135/239 (56%), Gaps = 9/239 (3%)
Query: 34 SAPRKQRRERTTFTRSQLEELEALFAKTQYPDVYAREEVALKINLPESRVQVWFKNRRAK 93
+A R++ +ERT+FT Q EELEALF++T +PD +E++AL+++LPES V+VWF+NRR K
Sbjct: 73 TAIRRRHKERTSFTHQQYEELEALFSQTMFPDRNLQEKLALRLDLPESTVKVWFRNRRFK 132
Query: 94 CRQQRQQQKQQQQPPGGQAKARPAKRKAGTSPRPSTDVCPDPLGISDSYSPPLPGPSGSP 153
++Q+QQQ +Q + + P+K+ TSPR S ISD YS P
Sbjct: 133 LKKQQQQQSAKQ-----RNQILPSKKNVPTSPRTSPSPYAFSPVISDFYSSLPSQPLDPS 187
Query: 154 TTAVATVSIWSPASESPLPEAQRAGLVASGPSLTSAPYAMTYAPASAFCSSPSAYGSPSS 213
A + S S+ + + Q LVAS P+L S Y + + P SS
Sbjct: 188 NWAWNSTFTESSTSDFQMQDTQWERLVASVPALYSDAYDI--FQIIELYNLPDENEISSS 245
Query: 214 YFSGLDPYLSPMVPQLG--GPALSPLSGPSVGPSLAQSPTSLSGQSYGAYSPVDSLEFK 270
F L YLSP Q+G G +LS +GP+VG S AQ+ +++ Q++ AYS DSLEF+
Sbjct: 246 SFHCLYQYLSPTKYQVGGQGSSLSIFAGPAVGLSPAQTWPNMTSQAFEAYSLTDSLEFQ 304
>gi|12707580 paired-like homeobox 2b [Homo sapiens]
Length = 314
Score = 111 bits (277), Expect = 9e-25
Identities = 84/233 (36%), Positives = 110/233 (47%), Gaps = 30/233 (12%)
Query: 27 HQAVPYPSAP-------------RKQRRERTTFTRSQLEELEALFAKTQYPDVYAREEVA 73
HQ+ PY + P RKQRR RTTFT +QL+ELE +FA+T YPD+Y REE+A
Sbjct: 73 HQSSPYAAVPYKLFTDHGGLNEKRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELA 132
Query: 74 LKINLPESRVQVWFKNRRAKCRQQRQQQKQQQQPP--GGQAKARPAKRKAGTSPRPSTDV 131
LKI+L E+RVQVWF+NRRAK R+Q + G K + R + STD
Sbjct: 133 LKIDLTEARVQVWFQNRRAKFRKQERAAAAAAAAAKNGSSGKKSDSSRDDESKEAKSTD- 191
Query: 132 CPDPLGISDSYSPPLP------GPSGSPTTAVATVSIWSPASESPLPEAQRAGLVASGPS 185
PD G P P G G P+ A A P + P G + +
Sbjct: 192 -PDSTGGPGPNPNPTPSCGANGGGGGGPSPAGA------PGAAGPGGPGGEPGKGGAAAA 244
Query: 186 LTSAPYAMTYAPASAFCSSPSAYGSPSSYFSGLDPYLSPMVPQLGGPALSPLS 238
+A A A A+A +A G + G P ++ + LGGP S LS
Sbjct: 245 AAAAAAAAAAAAAAAAGGLAAAGGPGQGWAPGPGP-ITSIPDSLGGPFASVLS 296
>gi|46249382 paired-like homeobox 2a [Homo sapiens]
Length = 284
Score = 110 bits (274), Expect = 2e-24
Identities = 76/212 (35%), Positives = 105/212 (49%), Gaps = 28/212 (13%)
Query: 27 HQAVPYPSAP-------------RKQRRERTTFTRSQLEELEALFAKTQYPDVYAREEVA 73
HQ PY + P RKQRR RTTFT +QL+ELE +FA+T YPD+Y REE+A
Sbjct: 65 HQPAPYSAVPYKFFPEPSGLHEKRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELA 124
Query: 74 LKINLPESRVQVWFKNRRAKCRQQRQQQKQQQQPPGGQAKARPAKRKAGTSPRPSTDVCP 133
LKI+L E+RVQVWF+NRRAK R +Q++ + G A A+ + + + S +
Sbjct: 125 LKIDLTEARVQVWFQNRRAKFR--KQERAASAKGAAGAAGAKKGEARCSSEDDDSKESTC 182
Query: 134 DPLGISDSYSPPLPGPS-GSP--TTAVATVSIWSPASESPLPEAQRAGLVA-------SG 183
P S + PP P P SP + + V++ S P P+ + L A G
Sbjct: 183 SPTPDSTASLPPPPAPGLASPRLSPSPLPVALGSGPGPGPGPQPLKGALWAGVAGGGGGG 242
Query: 184 PSLTSAPYAMTYAPASAFCSSPSAYGSPSSYF 215
P +A + PA S P + S F
Sbjct: 243 PGAGAAELLKAWQPAE---SGPGPFSGVLSSF 271
>gi|27436936 diencephalon/mesencephalon homeobox 1 isoform a [Homo
sapiens]
Length = 377
Score = 107 bits (268), Expect = 1e-23
Identities = 89/247 (36%), Positives = 122/247 (49%), Gaps = 33/247 (13%)
Query: 12 SVNALALSGPSVDLMHQAVPYPSAPRKQRRERTTFTRSQLEELEALFAKTQYPDVYAREE 71
SV+AL L+ D++ +A Y S RKQRR RT FT QLE LE F KT YPDV RE
Sbjct: 40 SVHALTLAERLADIILEA-RYGSQHRKQRRSRTAFTAQQLEALEKTFQKTHYPDVVMRER 98
Query: 72 VALKINLPESRVQVWFKNRRAKCRQQRQQQKQQQQPPGGQAKARPAKRKAGTSPRPSTDV 131
+A+ NLPE+RVQVWFKNRRAK R++++ +++Q +A+ + KA +P P T +
Sbjct: 99 LAMCTNLPEARVQVWFKNRRAKFRKKQRSLQKEQLQKQKEAEGSHGEGKA-EAPTPDTQL 157
Query: 132 CPDPLGISDSYSPP-LPGPSGSPTTAVATVSIWSPASESPLPEAQRAGLVASGPSLTSAP 190
D+ PP LP GS A +S+ ++ PE Q P P
Sbjct: 158 --------DTEQPPRLP---GSDPPAELHLSLSEQSASESAPEDQ--------PDREEDP 198
Query: 191 YAMTYAPASAFCSSPSAYGSPSSYFSGLD-PYLSPMVPQLGGPALSPLS--GPSVGPSLA 247
A P A SP + GL SP G ++P++ G +GPS +
Sbjct: 199 --------RAGAEDPKAEKSPGADSKGLGCKRGSPKADSPGSLTITPVAPGGGLLGPSHS 250
Query: 248 QSPTSLS 254
S + LS
Sbjct: 251 YSSSPLS 257
>gi|22218349 diencephalon/mesencephalon homeobox 1 isoform b [Homo
sapiens]
Length = 382
Score = 103 bits (257), Expect = 2e-22
Identities = 87/252 (34%), Positives = 118/252 (46%), Gaps = 32/252 (12%)
Query: 7 PGPHYSVNALALSGPSVDLMHQAVPYPSAPRKQRRERTTFTRSQLEELEALFAKTQYPDV 66
P H A L+G + + Y S RKQRR RT FT QLE LE F KT YPDV
Sbjct: 39 PSVHALTLAERLAGCTFQDIILEARYGSQHRKQRRSRTAFTAQQLEALEKTFQKTHYPDV 98
Query: 67 YAREEVALKINLPESRVQVWFKNRRAKCRQQRQQQKQQQQPPGGQAKARPAKRKAGTSPR 126
RE +A+ NLPE+RVQVWFKNRRAK R++++ +++Q +A+ + KA +P
Sbjct: 99 VMRERLAMCTNLPEARVQVWFKNRRAKFRKKQRSLQKEQLQKQKEAEGSHGEGKA-EAPT 157
Query: 127 PSTDVCPDPLGISDSYSPP-LPGPSGSPTTAVATVSIWSPASESPLPEAQRAGLVASGPS 185
P T + D+ PP LP GS A +S+ ++ PE Q P
Sbjct: 158 PDTQL--------DTEQPPRLP---GSDPPAELHLSLSEQSASESAPEDQ--------PD 198
Query: 186 LTSAPYAMTYAPASAFCSSPSAYGSPSSYFSGLD-PYLSPMVPQLGGPALSPLS--GPSV 242
P A P A SP + GL SP G ++P++ G +
Sbjct: 199 REEDP--------RAGAEDPKAEKSPGADSKGLGCKRGSPKADSPGSLTITPVAPGGGLL 250
Query: 243 GPSLAQSPTSLS 254
GPS + S + LS
Sbjct: 251 GPSHSYSSSPLS 262
>gi|4826912 paired-like homeodomain 3 [Homo sapiens]
Length = 302
Score = 100 bits (250), Expect = 1e-21
Identities = 75/205 (36%), Positives = 97/205 (47%), Gaps = 29/205 (14%)
Query: 34 SAPRKQRRERTTFTRSQLEELEALFAKTQYPDVYAREEVALKINLPESRVQVWFKNRRAK 93
S +KQRR+RT FT QL+ELEA F + +YPD+ REE+A+ NL E+RV+VWFKNRRAK
Sbjct: 57 SLKKKQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAK 116
Query: 94 CRQQRQQQKQQ------QQPPGG-----------------QAKARPAKRKAGTSPRPSTD 130
R++ + Q+ + P GG KA A T P
Sbjct: 117 WRKRERSQQAELCKGSFAAPLGGLVPPYEEVYPGYSYGNWPPKALAPPLAAKTFPFAFNS 176
Query: 131 VCPDPLGISDSYSPPLP-GPSGSPTTAVATVSIWSPASESPL---PEAQRAGLVASGPSL 186
V PL +SPP S P+ A A ++ P + L P V+SG
Sbjct: 177 VNVGPLASQPVFSPPSSIAASMVPSAAAAPGTVPGPGALQGLGGGPPGLAPAAVSSG--A 234
Query: 187 TSAPYAMTYAPASAFCSSPSAYGSP 211
S PYA A A+A SSP Y P
Sbjct: 235 VSCPYASAAAAAAAAASSPYVYRDP 259
>gi|24497589 aristaless related homeobox [Homo sapiens]
Length = 562
Score = 100 bits (249), Expect = 2e-21
Identities = 75/215 (34%), Positives = 102/215 (47%), Gaps = 35/215 (16%)
Query: 37 RKQRRERTTFTRSQLEELEALFAKTQYPDVYAREEVALKINLPESRVQVWFKNRRAKCRQ 96
RKQRR RTTFT QLEELE F KT YPDV+ REE+A++++L E+RVQVWF+NRRAK R+
Sbjct: 326 RKQRRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQVWFQNRRAKWRK 385
Query: 97 QRQQQKQQQQPPGGQAKARPAKRKAGTSPRPSTDVCPDPLGISDSYSPPLPGPSGSPTTA 156
+ KAG P P PL + SP L S P
Sbjct: 386 ---------------------REKAGAQTHPPGLPFPGPLSATHPLSPYLDA-SPFPPHH 423
Query: 157 VATVSIWSPASESPLPEAQRAGLVASGPSLTSAPYAMTYAPASAFCSSPSAYGSPSSYFS 216
A S W+ A+ A A+ PSL P + + P+ A + G+
Sbjct: 424 PALDSAWTAAA---------AAAAAAFPSLPPPPGSASLPPSGAPLGLSTFLGAAVFRHP 474
Query: 217 GLDPYLSPMVPQLGGPALSPLSGPSVGPSLAQSPT 251
++SP +L ++PL+ S +L + PT
Sbjct: 475 A---FISPAFGRLFS-TMAPLTSASTAAALLRQPT 505
>gi|126116581 retina and anterior neural fold homeobox [Homo
sapiens]
Length = 346
Score = 97.1 bits (240), Expect = 2e-20
Identities = 59/140 (42%), Positives = 74/140 (52%), Gaps = 8/140 (5%)
Query: 37 RKQRRERTTFTRSQLEELEALFAKTQYPDVYAREEVALKINLPESRVQVWFKNRRAKCRQ 96
+K RR RTTFT QL ELE F K+ YPDVY+REE+A K+NLPE RVQVWF+NRRAK R+
Sbjct: 134 KKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQNRRAKWRR 193
Query: 97 QRQ----QQKQQQQPPGGQAKARPAKRKA--GTSPRPSTDVCPDPLGISDSYSPPLPGPS 150
Q + K Q P +++ P+ + G P L + PPLPG
Sbjct: 194 QEKLEVSSMKLQDSPLLSFSRSPPSATLSPLGAGPGSGGGPAGGALPLESWLGPPLPG-- 251
Query: 151 GSPTTAVATVSIWSPASESP 170
G T + PA P
Sbjct: 252 GGATALQSLPGFGPPAQSLP 271
Score = 30.0 bits (66), Expect = 2.6
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Query: 185 SLTSAPYAMTYAPASAFCSSPSAYGSPSSYFSGLDPYLSPMVPQLGGPALSPLSGPSVGP 244
S + +P + T +P A P + G P+ L+ +L P +P G AL L P GP
Sbjct: 211 SFSRSPPSATLSPLGA---GPGSGGGPAGGALPLESWLGPPLPGGGATALQSL--PGFGP 265
Query: 245 SLAQSPTS 252
P S
Sbjct: 266 PAQSLPAS 273
>gi|122937484 dorsal root ganglia homeobox [Homo sapiens]
Length = 268
Score = 96.7 bits (239), Expect = 2e-20
Identities = 52/94 (55%), Positives = 65/94 (69%), Gaps = 5/94 (5%)
Query: 37 RKQRRERTTFTRSQLEELEALFAKTQYPDVYAREEVALKINLPESRVQVWFKNRRAKCRQ 96
RKQRR RTTFT QLE LEA+FA+T YPDV+ REE+A+KINL E+RVQVWF+NRRAK R
Sbjct: 36 RKQRRNRTTFTLQQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQVWFQNRRAKWR- 94
Query: 97 QRQQQKQQQQPPGGQ---AKARPAKRKAGTSPRP 127
+ ++ Q PG + A+ P + SP P
Sbjct: 95 -KTERGASDQEPGAKEPMAEVTPPPVRNINSPPP 127
>gi|4505619 paired box 7 isoform 1 [Homo sapiens]
Length = 520
Score = 96.3 bits (238), Expect = 3e-20
Identities = 73/220 (33%), Positives = 104/220 (47%), Gaps = 29/220 (13%)
Query: 37 RKQRRERTTFTRSQLEELEALFAKTQYPDVYAREEVALKINLPESRVQVWFKNRRAKCRQ 96
RKQRR RTTFT QLEELE F +T YPD+Y REE+A + L E+RVQVWF NRRA+ R+
Sbjct: 215 RKQRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRK 274
Query: 97 QRQQQKQQQQPPGGQAKARPAKRKAGTSPRPSTDVCPDPLGISDSYSPPLPGPSGSPTTA 156
Q G A G P P P + D S PTT
Sbjct: 275 Q----------AGANQLAAFNHLLPGGFPPTGMPTLP-PYQLPD---------STYPTTT 314
Query: 157 VATVSIWSPASESPLPEA--QRAGLVASGPSLTSAPYAMTYAPASAFCSSPSAYGSPSSY 214
++ + PLP + + GL A+ +A + Y +F S ++ +P++
Sbjct: 315 ISQDGGSTVHRPQPLPPSTMHQGGLAAAA---AAADTSSAYGARHSFSSYSDSFMNPAAP 371
Query: 215 FSGLDPYLSPMVPQLGGPALSPLSGPSVGPSLAQSPTSLS 254
+ ++P + + PQ+ +S L PS P Q+ S+S
Sbjct: 372 SNHMNPVSNGLSPQV----MSILGNPSAVPPQPQADFSIS 407
>gi|7524359 paired box 7 isoform 2 [Homo sapiens]
Length = 518
Score = 96.3 bits (238), Expect = 3e-20
Identities = 73/220 (33%), Positives = 104/220 (47%), Gaps = 29/220 (13%)
Query: 37 RKQRRERTTFTRSQLEELEALFAKTQYPDVYAREEVALKINLPESRVQVWFKNRRAKCRQ 96
RKQRR RTTFT QLEELE F +T YPD+Y REE+A + L E+RVQVWF NRRA+ R+
Sbjct: 213 RKQRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRK 272
Query: 97 QRQQQKQQQQPPGGQAKARPAKRKAGTSPRPSTDVCPDPLGISDSYSPPLPGPSGSPTTA 156
Q G A G P P P + D S PTT
Sbjct: 273 Q----------AGANQLAAFNHLLPGGFPPTGMPTLP-PYQLPD---------STYPTTT 312
Query: 157 VATVSIWSPASESPLPEA--QRAGLVASGPSLTSAPYAMTYAPASAFCSSPSAYGSPSSY 214
++ + PLP + + GL A+ +A + Y +F S ++ +P++
Sbjct: 313 ISQDGGSTVHRPQPLPPSTMHQGGLAAAA---AAADTSSAYGARHSFSSYSDSFMNPAAP 369
Query: 215 FSGLDPYLSPMVPQLGGPALSPLSGPSVGPSLAQSPTSLS 254
+ ++P + + PQ+ +S L PS P Q+ S+S
Sbjct: 370 SNHMNPVSNGLSPQV----MSILGNPSAVPPQPQADFSIS 405
>gi|207029223 paired box 7 isoform 3 [Homo sapiens]
Length = 505
Score = 96.3 bits (238), Expect = 3e-20
Identities = 73/220 (33%), Positives = 104/220 (47%), Gaps = 29/220 (13%)
Query: 37 RKQRRERTTFTRSQLEELEALFAKTQYPDVYAREEVALKINLPESRVQVWFKNRRAKCRQ 96
RKQRR RTTFT QLEELE F +T YPD+Y REE+A + L E+RVQVWF NRRA+ R+
Sbjct: 215 RKQRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRK 274
Query: 97 QRQQQKQQQQPPGGQAKARPAKRKAGTSPRPSTDVCPDPLGISDSYSPPLPGPSGSPTTA 156
Q G A G P P P + D S PTT
Sbjct: 275 Q----------AGANQLAAFNHLLPGGFPPTGMPTLP-PYQLPD---------STYPTTT 314
Query: 157 VATVSIWSPASESPLPEA--QRAGLVASGPSLTSAPYAMTYAPASAFCSSPSAYGSPSSY 214
++ + PLP + + GL A+ +A + Y +F S ++ +P++
Sbjct: 315 ISQDGGSTVHRPQPLPPSTMHQGGLAAAA---AAADTSSAYGARHSFSSYSDSFMNPAAP 371
Query: 215 FSGLDPYLSPMVPQLGGPALSPLSGPSVGPSLAQSPTSLS 254
+ ++P + + PQ+ +S L PS P Q+ S+S
Sbjct: 372 SNHMNPVSNGLSPQV----MSILGNPSAVPPQPQADFSIS 407
>gi|189083681 paired box gene 6 isoform a [Homo sapiens]
Length = 422
Score = 96.3 bits (238), Expect = 3e-20
Identities = 71/237 (29%), Positives = 104/237 (43%), Gaps = 37/237 (15%)
Query: 37 RKQRRERTTFTRSQLEELEALFAKTQYPDVYAREEVALKINLPESRVQVWFKNRRAKCRQ 96
RK +R RT+FT+ Q+E LE F +T YPDV+ARE +A KI+LPE+R+QVWF NRRAK R+
Sbjct: 208 RKLQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRR 267
Query: 97 QRQQQKQQQQPPGGQAKARPAKRKAGTSPRPSTDVCPDPLGISDSYSPPLPGPSGSPTTA 156
+ + + Q++Q P + IS S+S + P PTT
Sbjct: 268 EEKLRNQRRQASN----------------------TPSHIPISSSFSTSVYQPIPQPTTP 305
Query: 157 VATVSIWSPASESPLPEAQRAGLVASGPSLTSAPYAMTYAPASAFCSSPSAYGSPSSYFS 216
V++ + S + + PS T A P + SS S
Sbjct: 306 VSSFTSGSMLGRTDTALTNTYSALPPMPSFTMANNLPMQPPVPSQTSSYSC--------- 356
Query: 217 GLDPYLSPMVPQLGGPALSPLSGPSVGPSLAQSPTSLSG-QSYGAYSPVDSLEFKDP 272
+ P P + G + + P + + P SG S G SP S+ + P
Sbjct: 357 -----MLPTSPSVNGRSYDTYTPPHMQTHMNSQPMGTSGTTSTGLISPGVSVPVQVP 408
>gi|4580424 paired box gene 6 isoform b [Homo sapiens]
Length = 436
Score = 96.3 bits (238), Expect = 3e-20
Identities = 71/237 (29%), Positives = 104/237 (43%), Gaps = 37/237 (15%)
Query: 37 RKQRRERTTFTRSQLEELEALFAKTQYPDVYAREEVALKINLPESRVQVWFKNRRAKCRQ 96
RK +R RT+FT+ Q+E LE F +T YPDV+ARE +A KI+LPE+R+QVWF NRRAK R+
Sbjct: 222 RKLQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRR 281
Query: 97 QRQQQKQQQQPPGGQAKARPAKRKAGTSPRPSTDVCPDPLGISDSYSPPLPGPSGSPTTA 156
+ + + Q++Q P + IS S+S + P PTT
Sbjct: 282 EEKLRNQRRQASN----------------------TPSHIPISSSFSTSVYQPIPQPTTP 319
Query: 157 VATVSIWSPASESPLPEAQRAGLVASGPSLTSAPYAMTYAPASAFCSSPSAYGSPSSYFS 216
V++ + S + + PS T A P + SS S
Sbjct: 320 VSSFTSGSMLGRTDTALTNTYSALPPMPSFTMANNLPMQPPVPSQTSSYSC--------- 370
Query: 217 GLDPYLSPMVPQLGGPALSPLSGPSVGPSLAQSPTSLSG-QSYGAYSPVDSLEFKDP 272
+ P P + G + + P + + P SG S G SP S+ + P
Sbjct: 371 -----MLPTSPSVNGRSYDTYTPPHMQTHMNSQPMGTSGTTSTGLISPGVSVPVQVP 422
>gi|4505615 paired box gene 6 isoform a [Homo sapiens]
Length = 422
Score = 96.3 bits (238), Expect = 3e-20
Identities = 71/237 (29%), Positives = 104/237 (43%), Gaps = 37/237 (15%)
Query: 37 RKQRRERTTFTRSQLEELEALFAKTQYPDVYAREEVALKINLPESRVQVWFKNRRAKCRQ 96
RK +R RT+FT+ Q+E LE F +T YPDV+ARE +A KI+LPE+R+QVWF NRRAK R+
Sbjct: 208 RKLQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRR 267
Query: 97 QRQQQKQQQQPPGGQAKARPAKRKAGTSPRPSTDVCPDPLGISDSYSPPLPGPSGSPTTA 156
+ + + Q++Q P + IS S+S + P PTT
Sbjct: 268 EEKLRNQRRQASN----------------------TPSHIPISSSFSTSVYQPIPQPTTP 305
Query: 157 VATVSIWSPASESPLPEAQRAGLVASGPSLTSAPYAMTYAPASAFCSSPSAYGSPSSYFS 216
V++ + S + + PS T A P + SS S
Sbjct: 306 VSSFTSGSMLGRTDTALTNTYSALPPMPSFTMANNLPMQPPVPSQTSSYSC--------- 356
Query: 217 GLDPYLSPMVPQLGGPALSPLSGPSVGPSLAQSPTSLSG-QSYGAYSPVDSLEFKDP 272
+ P P + G + + P + + P SG S G SP S+ + P
Sbjct: 357 -----MLPTSPSVNGRSYDTYTPPHMQTHMNSQPMGTSGTTSTGLISPGVSVPVQVP 408
>gi|23592228 extraembryonic, spermatogenesis, homeobox 1-like [Homo
sapiens]
Length = 406
Score = 95.9 bits (237), Expect = 4e-20
Identities = 84/262 (32%), Positives = 112/262 (42%), Gaps = 40/262 (15%)
Query: 18 LSGPSVDLMHQAVPYPSAPRKQRRERTTFTRSQLEELEALFAKTQYPDVYAREEVALKIN 77
+ GP Q P P ++RR RT FT+ QL+ELE F ++QYPDV ARE +A ++N
Sbjct: 118 VEGPQPAEGPQTAEGPQPPERKRRRRTAFTQFQLQELENFFDESQYPDVVARERLAARLN 177
Query: 78 LPESRVQVWFKNRRAKCRQQRQQQKQQQQPP-----------GGQAKARPAKRKA----- 121
L E RVQVWF+NRRAK ++ ++ + GG A PA A
Sbjct: 178 LTEDRVQVWFQNRRAKWKRNQRVLMLRNTATADLAHPLDMFLGGAYYAAPALDPALCVHL 237
Query: 122 -GTSPRPST----DVCPDPLGISDSYSPPL-------PGPSGS------PTTAVATVSIW 163
PRP + P P + PP+ P P GS P +A V W
Sbjct: 238 VPQLPRPPVLPVPPMPPRPPMVPMPPRPPIAPMPPMAPVPPGSRMAPVPPGPRMAPVPPW 297
Query: 164 SPASESPLPEAQRAGLVASGPSLTSAPYAMTYAPASAFCSSPSAYGSPSSYFSGLDPYLS 223
P +P+P V +GP + P A P A P + L P
Sbjct: 298 PPM--APVPPWPPMAPVPTGPPMAPVPPGPPMARVPP--GPPMARVPPGPPMAPLPPG-P 352
Query: 224 PMVPQLGGPALSPL-SGPSVGP 244
PM P GP ++PL GP + P
Sbjct: 353 PMAPLPPGPPMAPLPPGPPMAP 374
>gi|113204604 aristaless-like homeobox 3 [Homo sapiens]
Length = 343
Score = 94.4 bits (233), Expect = 1e-19
Identities = 84/242 (34%), Positives = 109/242 (45%), Gaps = 41/242 (16%)
Query: 6 NPGPHYSVNALALSGPSVDLMHQAVPYPSAPRKQRRERTTFTRSQLEELEALFAKTQYPD 65
+PGP + L LS D M A K+RR RTTF+ QLEELE +F KT YPD
Sbjct: 124 SPGPCLASLHLPLSPGLPDSMELA----KNKSKKRRNRTTFSTFQLEELEKVFQKTHYPD 179
Query: 66 VYAREEVALKINLPESRVQVWFKNRRAKCRQQRQQQKQQQQPPGGQAKARPAKRKAGTSP 125
VYARE++AL+ +L E+RVQVWF+NRRAK R++ + K Q+ P S
Sbjct: 180 VYAREQLALRTDLTEARVQVWFQNRRAKWRKRERYGKIQE-------GRNPFTAAYDISV 232
Query: 126 RPSTDVCPDPLGISDSYSPPLPGPSGSPTTAVATVSIWSPASESPLPEAQRAGLVASGPS 185
P TD P L S SP P G P SP G+ PS
Sbjct: 233 LPRTDSHPQ-LQNSLWASPGSGSPGG-------------PCLVSP------EGI----PS 268
Query: 186 LTSAPYAMTYAPASAFCSSPSAYGSPSSYFSGLDPYLSPMVPQLGGPALSPLS-GPSVGP 244
+PY+ + + F P+ + +S + P LGG + P S G P
Sbjct: 269 PCMSPYSHPHGSVAGFMGVPAPSAAHPGIYS-----IHGFPPTLGGHSFEPSSDGDYKSP 323
Query: 245 SL 246
SL
Sbjct: 324 SL 325
>gi|7706659 paired related homeobox 2 [Homo sapiens]
Length = 253
Score = 93.6 bits (231), Expect = 2e-19
Identities = 55/126 (43%), Positives = 75/126 (59%), Gaps = 6/126 (4%)
Query: 37 RKQRRERTTFTRSQLEELEALFAKTQYPDVYAREEVALKINLPESRVQVWFKNRRAKCRQ 96
+KQRR RTTF SQL+ LE +F +T YPD + REE+A ++NL E+RVQVWF+NRRAK R+
Sbjct: 102 KKQRRNRTTFNSSQLQALERVFERTHYPDAFVREELARRVNLSEARVQVWFQNRRAKFRR 161
Query: 97 QRQQQKQQQQPPGGQAKARPAKRKAGTSPRPSTDVCPDPLG--ISDSYS---PPLPGPSG 151
+ + ++ ++ A + +PRP T + PD L S YS P PG SG
Sbjct: 162 NERAMLASRSASLLKSYSQEAAIEQPVAPRP-TALSPDYLSWTASSPYSTVPPYSPGSSG 220
Query: 152 SPTTAV 157
T V
Sbjct: 221 PATPGV 226
>gi|55743092 aristaless-like homeobox 4 [Homo sapiens]
Length = 411
Score = 92.4 bits (228), Expect = 4e-19
Identities = 68/176 (38%), Positives = 87/176 (49%), Gaps = 25/176 (14%)
Query: 10 HYSVNALALSGPSVDLMHQAVPYP-------SAPRKQRRERTTFTRSQLEELEALFAKTQ 62
+ SV + GP D +P P S K+RR RTTFT QLEELE +F KT
Sbjct: 179 YLSVKEAGVKGPQ-DRASSDLPSPLEKADSESNKGKKRRNRTTFTSYQLEELEKVFQKTH 237
Query: 63 YPDVYAREEVALKINLPESRVQVWFKNRRAKCR-QQRQQQKQQQQPPGGQAKARPAKRKA 121
YPDVYARE++A++ +L E+RVQVWF+NRRAK R ++R Q QQ + A P +A
Sbjct: 238 YPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRERFGQMQQVRTHFSTAYELPLLTRA 297
Query: 122 ----------------GTSPRPSTDVCPDPLGISDSYSPPLPGPSGSPTTAVATVS 161
SP P+ V DP+ S PG S T +VS
Sbjct: 298 ENYAQIQNPSWLGNNGAASPVPACVVPCDPVPACMSPHAHPPGSGASSVTDFLSVS 353
>gi|31563340 paired box 3 isoform PAX3 [Homo sapiens]
Length = 479
Score = 91.7 bits (226), Expect = 7e-19
Identities = 94/304 (30%), Positives = 129/304 (42%), Gaps = 47/304 (15%)
Query: 19 SGPSVDLMHQAVPYPSAP--RKQRRERTTFTRSQLEELEALFAKTQYPDVYAREEVALKI 76
S P D P P RKQRR RTTFT QLEELE F +T YPD+Y REE+A +
Sbjct: 197 SAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRA 256
Query: 77 NLPESRVQVWFKNRRAKCRQQ---RQQQKQQQQPPGG----QAKARPAKRKAGTSPRPST 129
L E+RVQVWF NRRA+ R+Q Q PGG P + + TS +P++
Sbjct: 257 KLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMPTLPTYQLSETSYQPTS 316
Query: 130 DVCPDPLGISD-SYSPPLPGPSGSPTTAVATVSIWSPASESPLPEAQRAGLVASGPSLTS 188
P +SD S + P P T +T+ +S + + R G
Sbjct: 317 ----IPQAVSDPSSTVHRPQPLPPSTVHQSTIPSNPDSSSAYCLPSTRHGF--------- 363
Query: 189 APYAMTYAPASAFCSSPSAYGSPSSYFSGLDPYLSPMVPQLGGP--------ALSPLSGP 240
+ Y ++ P S PS +P + +GL P + ++ GG ALSPL+G
Sbjct: 364 SSYTDSFVPP----SGPSNPMNP-TIGNGLSPQVMGLLTNHGGVPHQPQTDYALSPLTG- 417
Query: 241 SVGPSLAQSPTSLSGQSYGAYSPVDSLEFKDP--TGTWKFTYNPMDPL------DYKDQS 292
G + ++ Q +DSL T+ T MDP+ Y
Sbjct: 418 --GLEPTTTVSASCSQRLDHMKSLDSLPTSQSYCPPTYSTTGYSMDPVTGYQYGQYGQSK 475
Query: 293 AWKF 296
W F
Sbjct: 476 PWTF 479
>gi|188219638 paired box 3 isoform PAX3i [Homo sapiens]
Length = 483
Score = 90.9 bits (224), Expect = 1e-18
Identities = 81/239 (33%), Positives = 110/239 (46%), Gaps = 36/239 (15%)
Query: 19 SGPSVDLMHQAVPYPSAP--RKQRRERTTFTRSQLEELEALFAKTQYPDVYAREEVALKI 76
S P D P P RKQRR RTTFT QLEELE F +T YPD+Y REE+A +
Sbjct: 196 SAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRA 255
Query: 77 NLPESRVQVWFKNRRAKCRQQ---RQQQKQQQQPPGG----QAKARPAKRKAGTSPRPST 129
L E+RVQVWF NRRA+ R+Q Q PGG P + + TS +P++
Sbjct: 256 KLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMPTLPTYQLSETSYQPTS 315
Query: 130 DVCPDPLGISD-SYSPPLPGPSGSPTTAVATVSIWSPASESPLPEAQRAGLVASGPSLTS 188
P +SD S + P P T +T+ +S + + R G
Sbjct: 316 ----IPQAVSDPSSTVHRPQPLPPSTVHQSTIPSNPDSSSAYCLPSTRHGF--------- 362
Query: 189 APYAMTYAPASAFCSSPSAYGSPSSYFSGLDPYLSPMVPQLGGP--------ALSPLSG 239
+ Y ++ P S PS +P + +GL P + ++ GG ALSPL+G
Sbjct: 363 SSYTDSFVPP----SGPSNPMNP-TIGNGLSPQVMGLLTNHGGVPHQPQTDYALSPLTG 416
>gi|31563344 paired box 3 isoform PAX3e [Homo sapiens]
Length = 505
Score = 90.9 bits (224), Expect = 1e-18
Identities = 81/239 (33%), Positives = 110/239 (46%), Gaps = 36/239 (15%)
Query: 19 SGPSVDLMHQAVPYPSAP--RKQRRERTTFTRSQLEELEALFAKTQYPDVYAREEVALKI 76
S P D P P RKQRR RTTFT QLEELE F +T YPD+Y REE+A +
Sbjct: 197 SAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRA 256
Query: 77 NLPESRVQVWFKNRRAKCRQQ---RQQQKQQQQPPGG----QAKARPAKRKAGTSPRPST 129
L E+RVQVWF NRRA+ R+Q Q PGG P + + TS +P++
Sbjct: 257 KLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMPTLPTYQLSETSYQPTS 316
Query: 130 DVCPDPLGISD-SYSPPLPGPSGSPTTAVATVSIWSPASESPLPEAQRAGLVASGPSLTS 188
P +SD S + P P T +T+ +S + + R G
Sbjct: 317 ----IPQAVSDPSSTVHRPQPLPPSTVHQSTIPSNPDSSSAYCLPSTRHGF--------- 363
Query: 189 APYAMTYAPASAFCSSPSAYGSPSSYFSGLDPYLSPMVPQLGGP--------ALSPLSG 239
+ Y ++ P S PS +P + +GL P + ++ GG ALSPL+G
Sbjct: 364 SSYTDSFVPP----SGPSNPMNP-TIGNGLSPQVMGLLTNHGGVPHQPQTDYALSPLTG 417
>gi|31563342 paired box 3 isoform PAX3d [Homo sapiens]
Length = 484
Score = 90.9 bits (224), Expect = 1e-18
Identities = 81/239 (33%), Positives = 110/239 (46%), Gaps = 36/239 (15%)
Query: 19 SGPSVDLMHQAVPYPSAP--RKQRRERTTFTRSQLEELEALFAKTQYPDVYAREEVALKI 76
S P D P P RKQRR RTTFT QLEELE F +T YPD+Y REE+A +
Sbjct: 197 SAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRA 256
Query: 77 NLPESRVQVWFKNRRAKCRQQ---RQQQKQQQQPPGG----QAKARPAKRKAGTSPRPST 129
L E+RVQVWF NRRA+ R+Q Q PGG P + + TS +P++
Sbjct: 257 KLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMPTLPTYQLSETSYQPTS 316
Query: 130 DVCPDPLGISD-SYSPPLPGPSGSPTTAVATVSIWSPASESPLPEAQRAGLVASGPSLTS 188
P +SD S + P P T +T+ +S + + R G
Sbjct: 317 ----IPQAVSDPSSTVHRPQPLPPSTVHQSTIPSNPDSSSAYCLPSTRHGF--------- 363
Query: 189 APYAMTYAPASAFCSSPSAYGSPSSYFSGLDPYLSPMVPQLGGP--------ALSPLSG 239
+ Y ++ P S PS +P + +GL P + ++ GG ALSPL+G
Sbjct: 364 SSYTDSFVPP----SGPSNPMNP-TIGNGLSPQVMGLLTNHGGVPHQPQTDYALSPLTG 417
>gi|31563348 paired box 3 isoform PAX3g [Homo sapiens]
Length = 403
Score = 87.8 bits (216), Expect = 1e-17
Identities = 75/220 (34%), Positives = 96/220 (43%), Gaps = 34/220 (15%)
Query: 19 SGPSVDLMHQAVPYPSAP--RKQRRERTTFTRSQLEELEALFAKTQYPDVYAREEVALKI 76
S P D P P RKQRR RTTFT QLEELE F +T YPD+Y REE+A +
Sbjct: 197 SAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRA 256
Query: 77 NLPESRVQVWFKNRRAKCRQQ---RQQQKQQQQPPGGQAKARPAKRKAGTSPRPSTDVCP 133
L E+RVQVWF NRRA+ R+Q Q PGG P + P
Sbjct: 257 KLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGG-------------FPPTAMPTLP 303
Query: 134 DPLGISDSYSP-PLPGPSGSPTTAVATVSIWSPASESPLPEAQ-RAGLVASGPSLTSAPY 191
SY P +P P++ V PLP + + S P +SA Y
Sbjct: 304 TYQLSETSYQPTSIPQAVSDPSSTV--------HRPQPLPPSTVHQSTIPSNPDSSSA-Y 354
Query: 192 AMTYAPASAFCSSPSAYGSPSSYFSGLDPY----LSPMVP 227
+ + F S ++ PS + ++P LSP VP
Sbjct: 355 CLP-STRHGFSSYTDSFVPPSGPSNPMNPTIGNGLSPQVP 393
>gi|31563346 paired box 3 isoform PAX3h [Homo sapiens]
Length = 407
Score = 87.8 bits (216), Expect = 1e-17
Identities = 75/220 (34%), Positives = 96/220 (43%), Gaps = 34/220 (15%)
Query: 19 SGPSVDLMHQAVPYPSAP--RKQRRERTTFTRSQLEELEALFAKTQYPDVYAREEVALKI 76
S P D P P RKQRR RTTFT QLEELE F +T YPD+Y REE+A +
Sbjct: 197 SAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRA 256
Query: 77 NLPESRVQVWFKNRRAKCRQQ---RQQQKQQQQPPGGQAKARPAKRKAGTSPRPSTDVCP 133
L E+RVQVWF NRRA+ R+Q Q PGG P + P
Sbjct: 257 KLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGG-------------FPPTAMPTLP 303
Query: 134 DPLGISDSYSP-PLPGPSGSPTTAVATVSIWSPASESPLPEAQ-RAGLVASGPSLTSAPY 191
SY P +P P++ V PLP + + S P +SA Y
Sbjct: 304 TYQLSETSYQPTSIPQAVSDPSSTV--------HRPQPLPPSTVHQSTIPSNPDSSSA-Y 354
Query: 192 AMTYAPASAFCSSPSAYGSPSSYFSGLDPY----LSPMVP 227
+ + F S ++ PS + ++P LSP VP
Sbjct: 355 CLP-STRHGFSSYTDSFVPPSGPSNPMNPTIGNGLSPQVP 393
>gi|154813201 cartilage paired-class homeoprotein 1 [Homo sapiens]
Length = 326
Score = 87.8 bits (216), Expect = 1e-17
Identities = 42/68 (61%), Positives = 53/68 (77%)
Query: 38 KQRRERTTFTRSQLEELEALFAKTQYPDVYAREEVALKINLPESRVQVWFKNRRAKCRQQ 97
K+RR RTTFT QLEELE +F KT YPDVY RE++AL+ L E+RVQVWF+NRRAK R++
Sbjct: 131 KKRRHRTTFTSLQLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVWFQNRRAKWRKR 190
Query: 98 RQQQKQQQ 105
+ + QQ
Sbjct: 191 ERYGQIQQ 198
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.128 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,308,797
Number of Sequences: 37866
Number of extensions: 950727
Number of successful extensions: 8374
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 391
Number of HSP's successfully gapped in prelim test: 737
Number of HSP's that attempted gapping in prelim test: 5182
Number of HSP's gapped (non-prelim): 2666
length of query: 299
length of database: 18,247,518
effective HSP length: 102
effective length of query: 197
effective length of database: 14,385,186
effective search space: 2833881642
effective search space used: 2833881642
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.