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Search of human proteins with 4557353
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4557353 branched chain keto acid dehydrogenase E1 beta
precursor [Homo sapiens]
(392 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4557353 branched chain keto acid dehydrogenase E1 beta precur... 805 0.0
gi|34101272 branched chain keto acid dehydrogenase E1 beta precu... 805 0.0
gi|156564403 pyruvate dehydrogenase (lipoamide) beta [Homo sapiens] 183 3e-46
gi|133778974 transketolase-like 2 [Homo sapiens] 54 3e-07
gi|225637463 transketolase-like 1 isoform c [Homo sapiens] 43 6e-04
gi|225637461 transketolase-like 1 isoform b [Homo sapiens] 43 6e-04
gi|225637459 transketolase-like 1 isoform a [Homo sapiens] 43 6e-04
gi|38788380 dehydrogenase E1 and transketolase domain containing... 39 0.011
gi|51873036 oxoglutarate (alpha-ketoglutarate) dehydrogenase (li... 37 0.031
gi|54112397 calcium channel, voltage-dependent, alpha 2/delta 3 ... 34 0.26
gi|239747320 PREDICTED: forkhead box protein O6 [Homo sapiens] 32 0.76
gi|119395764 NLR family, pyrin domain containing 3 isoform a [Ho... 31 2.2
gi|188536116 NLR family, pyrin domain containing 3 isoform c [Ho... 31 2.2
gi|188536002 NLR family, pyrin domain containing 3 isoform d [Ho... 31 2.2
gi|34878693 NLR family, pyrin domain containing 3 isoform a [Hom... 31 2.2
gi|34878690 NLR family, pyrin domain containing 3 isoform b [Hom... 31 2.2
gi|7705915 tubulin, epsilon 1 [Homo sapiens] 30 4.9
gi|23308587 N-acetylglutamate synthase [Homo sapiens] 29 8.4
>gi|4557353 branched chain keto acid dehydrogenase E1 beta precursor
[Homo sapiens]
Length = 392
Score = 805 bits (2078), Expect = 0.0
Identities = 392/392 (100%), Positives = 392/392 (100%)
Query: 1 MAVVAAAAGWLLRLRAAGAEGHWRRLPGAGLARGFLHPAATVEDAAQRRQVAHFTFQPDP 60
MAVVAAAAGWLLRLRAAGAEGHWRRLPGAGLARGFLHPAATVEDAAQRRQVAHFTFQPDP
Sbjct: 1 MAVVAAAAGWLLRLRAAGAEGHWRRLPGAGLARGFLHPAATVEDAAQRRQVAHFTFQPDP 60
Query: 61 EPREYGQTQKMNLFQSVTSALDNSLAKDPTAVIFGEDVAFGGVFRCTVGLRDKYGKDRVF 120
EPREYGQTQKMNLFQSVTSALDNSLAKDPTAVIFGEDVAFGGVFRCTVGLRDKYGKDRVF
Sbjct: 61 EPREYGQTQKMNLFQSVTSALDNSLAKDPTAVIFGEDVAFGGVFRCTVGLRDKYGKDRVF 120
Query: 121 NTPLCEQGIVGFGIGIAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSL 180
NTPLCEQGIVGFGIGIAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSL
Sbjct: 121 NTPLCEQGIVGFGIGIAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSL 180
Query: 181 TIRSPWGCVGHGALYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNPCIFFEP 240
TIRSPWGCVGHGALYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNPCIFFEP
Sbjct: 181 TIRSPWGCVGHGALYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNPCIFFEP 240
Query: 241 KILYRAAAEEVPIEPYNIPLSQAEVIQEGSDVTLVAWGTQVHVIREVASMAKEKLGVSCE 300
KILYRAAAEEVPIEPYNIPLSQAEVIQEGSDVTLVAWGTQVHVIREVASMAKEKLGVSCE
Sbjct: 241 KILYRAAAEEVPIEPYNIPLSQAEVIQEGSDVTLVAWGTQVHVIREVASMAKEKLGVSCE 300
Query: 301 VIDLRTIIPWDVDTICKSVIKTGRLLISHEAPLTGGFASEISSTVQEECFLNLEAPISRV 360
VIDLRTIIPWDVDTICKSVIKTGRLLISHEAPLTGGFASEISSTVQEECFLNLEAPISRV
Sbjct: 301 VIDLRTIIPWDVDTICKSVIKTGRLLISHEAPLTGGFASEISSTVQEECFLNLEAPISRV 360
Query: 361 CGYDTPFPHIFEPFYIPDKWKCYDALRKMINY 392
CGYDTPFPHIFEPFYIPDKWKCYDALRKMINY
Sbjct: 361 CGYDTPFPHIFEPFYIPDKWKCYDALRKMINY 392
>gi|34101272 branched chain keto acid dehydrogenase E1 beta
precursor [Homo sapiens]
Length = 392
Score = 805 bits (2078), Expect = 0.0
Identities = 392/392 (100%), Positives = 392/392 (100%)
Query: 1 MAVVAAAAGWLLRLRAAGAEGHWRRLPGAGLARGFLHPAATVEDAAQRRQVAHFTFQPDP 60
MAVVAAAAGWLLRLRAAGAEGHWRRLPGAGLARGFLHPAATVEDAAQRRQVAHFTFQPDP
Sbjct: 1 MAVVAAAAGWLLRLRAAGAEGHWRRLPGAGLARGFLHPAATVEDAAQRRQVAHFTFQPDP 60
Query: 61 EPREYGQTQKMNLFQSVTSALDNSLAKDPTAVIFGEDVAFGGVFRCTVGLRDKYGKDRVF 120
EPREYGQTQKMNLFQSVTSALDNSLAKDPTAVIFGEDVAFGGVFRCTVGLRDKYGKDRVF
Sbjct: 61 EPREYGQTQKMNLFQSVTSALDNSLAKDPTAVIFGEDVAFGGVFRCTVGLRDKYGKDRVF 120
Query: 121 NTPLCEQGIVGFGIGIAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSL 180
NTPLCEQGIVGFGIGIAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSL
Sbjct: 121 NTPLCEQGIVGFGIGIAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSL 180
Query: 181 TIRSPWGCVGHGALYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNPCIFFEP 240
TIRSPWGCVGHGALYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNPCIFFEP
Sbjct: 181 TIRSPWGCVGHGALYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNPCIFFEP 240
Query: 241 KILYRAAAEEVPIEPYNIPLSQAEVIQEGSDVTLVAWGTQVHVIREVASMAKEKLGVSCE 300
KILYRAAAEEVPIEPYNIPLSQAEVIQEGSDVTLVAWGTQVHVIREVASMAKEKLGVSCE
Sbjct: 241 KILYRAAAEEVPIEPYNIPLSQAEVIQEGSDVTLVAWGTQVHVIREVASMAKEKLGVSCE 300
Query: 301 VIDLRTIIPWDVDTICKSVIKTGRLLISHEAPLTGGFASEISSTVQEECFLNLEAPISRV 360
VIDLRTIIPWDVDTICKSVIKTGRLLISHEAPLTGGFASEISSTVQEECFLNLEAPISRV
Sbjct: 301 VIDLRTIIPWDVDTICKSVIKTGRLLISHEAPLTGGFASEISSTVQEECFLNLEAPISRV 360
Query: 361 CGYDTPFPHIFEPFYIPDKWKCYDALRKMINY 392
CGYDTPFPHIFEPFYIPDKWKCYDALRKMINY
Sbjct: 361 CGYDTPFPHIFEPFYIPDKWKCYDALRKMINY 392
>gi|156564403 pyruvate dehydrogenase (lipoamide) beta [Homo sapiens]
Length = 359
Score = 183 bits (464), Expect = 3e-46
Identities = 114/324 (35%), Positives = 172/324 (53%), Gaps = 11/324 (3%)
Query: 76 SVTSALDNSLAKDPTAVIFGEDVA-FGGVFRCTVGLRDKYGKDRVFNTPLCEQGIVGFGI 134
++ +D L +D + GE+VA + G ++ + GL KYG R+ +TP+ E G G +
Sbjct: 38 AINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAV 97
Query: 135 GIAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGCVGHGAL 194
G A+ G I E ++ A DQ++N AAK Y SG L + R P G A
Sbjct: 98 GAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGL-QPVPIVFRGPNGASAGVAA 156
Query: 195 YHSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNPCIFFEPKILYRAAAE---EV 251
HSQ A++ HCPG+KVV P + AKGL+ S I D NP + E +++Y E E
Sbjct: 157 QHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVVLENELMYGVPFEFPPEA 216
Query: 252 PIEPYNIPLSQAEVIQEGSDVTLVAWGTQV-HVIREVASMAKEKLGVSCEVIDLRTIIPW 310
+ + IP+ +A++ ++G+ +T+V+ V H + A ++KE GV CEVI++RTI P
Sbjct: 217 QSKDFLIPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSKE--GVECEVINMRTIRPM 274
Query: 311 DVDTICKSVIKTGRLLISHEAPLTGGFASEISSTVQE-ECFLNLEAPISRVCGYDTPFPH 369
D++TI SV+KT L+ G +EI + + E F L+AP RV G D P P+
Sbjct: 275 DMETIEASVMKTNHLVTVEGGWPQFGVGAEICARIMEGPAFNFLDAPAVRVTGADVPMPY 334
Query: 370 --IFEPFYIPDKWKCYDALRKMIN 391
I E IP A++K +N
Sbjct: 335 AKILEDNSIPQVKDIIFAIKKTLN 358
>gi|133778974 transketolase-like 2 [Homo sapiens]
Length = 626
Score = 53.5 bits (127), Expect = 3e-07
Identities = 67/272 (24%), Positives = 101/272 (37%), Gaps = 32/272 (11%)
Query: 86 AKDPTAVIFGEDV--AFGGVFRCTVGLRDKYGKDRVFNTPLCEQGIVGFGIGIAVTGATA 143
A + V+ G+ + F +FR K +R + EQ +V +G A G T
Sbjct: 335 ANERVIVLSGDTMNSTFSEIFR-------KEHPERFIECIIAEQNMVSVALGCATRGRTI 387
Query: 144 IAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGCVGHGALYHSQSPEAF 203
FA + AFDQ+ A + +CG T G + A
Sbjct: 388 AFAGAFAAFFTRAFDQLRMGAISQANINLIGSHCGVSTGED-------GVSQMALEDLAM 440
Query: 204 FAHCPGIKVVIPRSPFQAKGLLLSCIEDKNPCIFF----EPKILYRAAAEEVPIEPYNIP 259
F P V P + + K C E ++Y P E N
Sbjct: 441 FRSIPNCTVFYPSDAISTEHAIYLAANTKGMCFIRTSQPETAVIY------TPQE--NFE 492
Query: 260 LSQAEVIQEGSD--VTLVAWGTQVHVIREVASMAKEKLGVSCEVIDLRTIIPWDVDTICK 317
+ QA+V++ G + VT++ G +H E A ++ G+S VID TI P D TI
Sbjct: 493 IGQAKVVRHGVNDKVTVIGAGVTLHEALEAADHLSQQ-GISVRVIDPFTIKPLDAATIIS 551
Query: 318 SVIKT-GRLLISHEAPLTGGFASEISSTVQEE 348
S T GR++ + GG + + V E
Sbjct: 552 SAKATGGRVITVEDHYREGGIGEAVCAAVSRE 583
>gi|225637463 transketolase-like 1 isoform c [Homo sapiens]
Length = 540
Score = 42.7 bits (99), Expect = 6e-04
Identities = 64/240 (26%), Positives = 90/240 (37%), Gaps = 31/240 (12%)
Query: 117 DRVFNTPLCEQGIVGFGIGIAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFN 176
+R + EQ +V +G A G T FA ++ AFD I R G L
Sbjct: 275 ERFIECFMAEQNMVSVALGCASRGRTIAFASTFAAFLTRAFDHI---------RIGGLAE 325
Query: 177 CGSLTIRSPWGC-VGH-GALYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNP 234
I S G VG GA + A F P + P + + K
Sbjct: 326 SNINIIGSHCGVSVGDDGASQMALEDIAMFRTIPKCTIFYPTDAVSTEHAVALAANAKGM 385
Query: 235 CIFF----EPKILYRAAAEEVPIEPYNIPLSQAEVIQE--GSDVTLVAWGTQVHVIREVA 288
C E ++Y P E + I QA+V++ VT++ G V+ E
Sbjct: 386 CFIRTTRPETMVIY------TPQERFEI--GQAKVLRHCVSDKVTVIGAGITVY---EAL 434
Query: 289 SMAKE--KLGVSCEVIDLRTIIPWDVDTICKSVIKT-GRLLISHEAPLTGGFASEISSTV 345
+ A E K + VIDL TI P DV TI S T GR++ + GG + + V
Sbjct: 435 AAADELSKQDIFIRVIDLFTIKPLDVATIVSSAKATEGRIITVEDHYPQGGIGEAVCAAV 494
>gi|225637461 transketolase-like 1 isoform b [Homo sapiens]
Length = 590
Score = 42.7 bits (99), Expect = 6e-04
Identities = 64/240 (26%), Positives = 90/240 (37%), Gaps = 31/240 (12%)
Query: 117 DRVFNTPLCEQGIVGFGIGIAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFN 176
+R + EQ +V +G A G T FA ++ AFD I R G L
Sbjct: 325 ERFIECFMAEQNMVSVALGCASRGRTIAFASTFAAFLTRAFDHI---------RIGGLAE 375
Query: 177 CGSLTIRSPWGC-VGH-GALYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNP 234
I S G VG GA + A F P + P + + K
Sbjct: 376 SNINIIGSHCGVSVGDDGASQMALEDIAMFRTIPKCTIFYPTDAVSTEHAVALAANAKGM 435
Query: 235 CIFF----EPKILYRAAAEEVPIEPYNIPLSQAEVIQE--GSDVTLVAWGTQVHVIREVA 288
C E ++Y P E + I QA+V++ VT++ G V+ E
Sbjct: 436 CFIRTTRPETMVIY------TPQERFEI--GQAKVLRHCVSDKVTVIGAGITVY---EAL 484
Query: 289 SMAKE--KLGVSCEVIDLRTIIPWDVDTICKSVIKT-GRLLISHEAPLTGGFASEISSTV 345
+ A E K + VIDL TI P DV TI S T GR++ + GG + + V
Sbjct: 485 AAADELSKQDIFIRVIDLFTIKPLDVATIVSSAKATEGRIITVEDHYPQGGIGEAVCAAV 544
>gi|225637459 transketolase-like 1 isoform a [Homo sapiens]
Length = 596
Score = 42.7 bits (99), Expect = 6e-04
Identities = 64/240 (26%), Positives = 90/240 (37%), Gaps = 31/240 (12%)
Query: 117 DRVFNTPLCEQGIVGFGIGIAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFN 176
+R + EQ +V +G A G T FA ++ AFD I R G L
Sbjct: 331 ERFIECFMAEQNMVSVALGCASRGRTIAFASTFAAFLTRAFDHI---------RIGGLAE 381
Query: 177 CGSLTIRSPWGC-VGH-GALYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNP 234
I S G VG GA + A F P + P + + K
Sbjct: 382 SNINIIGSHCGVSVGDDGASQMALEDIAMFRTIPKCTIFYPTDAVSTEHAVALAANAKGM 441
Query: 235 CIFF----EPKILYRAAAEEVPIEPYNIPLSQAEVIQE--GSDVTLVAWGTQVHVIREVA 288
C E ++Y P E + I QA+V++ VT++ G V+ E
Sbjct: 442 CFIRTTRPETMVIY------TPQERFEI--GQAKVLRHCVSDKVTVIGAGITVY---EAL 490
Query: 289 SMAKE--KLGVSCEVIDLRTIIPWDVDTICKSVIKT-GRLLISHEAPLTGGFASEISSTV 345
+ A E K + VIDL TI P DV TI S T GR++ + GG + + V
Sbjct: 491 AAADELSKQDIFIRVIDLFTIKPLDVATIVSSAKATEGRIITVEDHYPQGGIGEAVCAAV 550
>gi|38788380 dehydrogenase E1 and transketolase domain containing 1
[Homo sapiens]
Length = 919
Score = 38.5 bits (88), Expect = 0.011
Identities = 62/266 (23%), Positives = 110/266 (41%), Gaps = 40/266 (15%)
Query: 119 VFNTPLCEQGIVGFGIGIAVTGATAIA--EIQFADYIFPA---FDQIVNEA-AKYRYRSG 172
V N+PL E+ ++GF G+++ + E QF D+ A FD ++ AK+ +SG
Sbjct: 633 VSNSPLSEEAVLGFEYGMSIESPKLLPLWEAQFGDFFNGAQIIFDTFISGGEAKWLLQSG 692
Query: 173 DLFNCGSLTIRSPWGCVGHGALYHSQSPEAFFAHCPGIK-----------VVIPRSPFQA 221
+ I P G G G + S E F C + VV P +P Q
Sbjct: 693 -------IVILLPHGYDGAGPDHSSCRIERFLQMCDSAEEGVDGDTVNMFVVHPTTPAQY 745
Query: 222 KGLLLSCI--EDKNPCIFFEPKILYRAAA------EEVPIEPYNIPLSQAEVIQEGSDVT 273
LL + + P I PK+L R A E P +N + + V +
Sbjct: 746 FHLLRRQMVRNFRKPLIVASPKMLLRLPAAVSTLQEMAPGTTFNPVIGDSSVDPKKVKTL 805
Query: 274 LVAWGTQVH-VIREVASMAKEKLGVSCEVIDLRTIIPWDVDTICKSVIKTGRL---LISH 329
+ G + ++++ S+ +K + +I + + P+ +D++ + + K + + S
Sbjct: 806 VFCSGKHFYSLVKQRESLGAKKHDFA--IIRVEELCPFPLDSLQQEMSKYKHVKDHIWSQ 863
Query: 330 EAPLTGGFASEISSTVQEE--CFLNL 353
E P G S +S +++ C L L
Sbjct: 864 EEPQNMGPWSFVSPRFEKQLACKLRL 889
>gi|51873036 oxoglutarate (alpha-ketoglutarate) dehydrogenase
(lipoamide) isoform 1 precursor [Homo sapiens]
Length = 1023
Score = 37.0 bits (84), Expect = 0.031
Identities = 31/103 (30%), Positives = 46/103 (44%), Gaps = 13/103 (12%)
Query: 119 VFNTPLCEQGIVGFGIGIAVTGATAIA--EIQFADYIFPA---FDQIVNEA-AKYRYRSG 172
V N+ L E G++GF +G A+ A+ E QF D+ A DQ + AK+ ++G
Sbjct: 715 VCNSSLSEYGVLGFELGFAMASPNALVLWEAQFGDFHNTAQCIIDQFICPGQAKWVRQNG 774
Query: 173 DLFNCGSLTIRSPWGCVGHGALYHSQSPEAFFAHCPGIKVVIP 215
+ + P G G G + S PE F C V+P
Sbjct: 775 -------IVLLLPHGMEGMGPEHSSARPERFLQMCNDDPDVLP 810
>gi|54112397 calcium channel, voltage-dependent, alpha 2/delta 3
subunit [Homo sapiens]
Length = 1091
Score = 33.9 bits (76), Expect = 0.26
Identities = 31/123 (25%), Positives = 50/123 (40%), Gaps = 22/123 (17%)
Query: 244 YRAAAEEVPIE-PYNIPLSQAEVIQEGSDVTLVAWGTQVHVIREVASMAKEKLGVS---- 298
YR AAE++P Y+IP S V + +V T + ++ E S +G+
Sbjct: 770 YRRAAEQIPGSFVYSIPFSTGPVNKSN----VVTASTSIQLLDERKSPVVAAVGIQMKLE 825
Query: 299 ------------CEVIDLRTIIPWDVDTI-CKSVIKTGRLLISHEAPLTGGFASEISSTV 345
C +D + I D +T+ C + G +L+S + TG F EI V
Sbjct: 826 FFQRKFWTASRQCASLDGKCSISCDDETVNCYLIDNNGFILVSEDYTQTGDFFGEIEGAV 885
Query: 346 QEE 348
+
Sbjct: 886 MNK 888
>gi|239747320 PREDICTED: forkhead box protein O6 [Homo sapiens]
Length = 589
Score = 32.3 bits (72), Expect = 0.76
Identities = 23/73 (31%), Positives = 31/73 (42%), Gaps = 14/73 (19%)
Query: 6 AAAGWLLRLRAAGAEGHWRR---LPGAGLA---------RGFLHPAATVEDAAQRRQVAH 53
++AGW ++ A+G G W R LPGA GFL P E + R +
Sbjct: 133 SSAGW--KVGASGWGGGWGRRLGLPGAARCVGLQEGRQKEGFLAPPGVTESCSSRAPSSS 190
Query: 54 FTFQPDPEPREYG 66
F + P PR G
Sbjct: 191 FVLRGSPAPRADG 203
>gi|119395764 NLR family, pyrin domain containing 3 isoform a [Homo
sapiens]
Length = 1036
Score = 30.8 bits (68), Expect = 2.2
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 192 GALYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNPCI 236
G LY + F+ HC + +V RS L++SC D NP I
Sbjct: 246 GTLYQDRFDYLFYIHCREVSLVTQRS---LGDLIMSCCPDPNPPI 287
>gi|188536116 NLR family, pyrin domain containing 3 isoform c [Homo
sapiens]
Length = 979
Score = 30.8 bits (68), Expect = 2.2
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 192 GALYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNPCI 236
G LY + F+ HC + +V RS L++SC D NP I
Sbjct: 246 GTLYQDRFDYLFYIHCREVSLVTQRS---LGDLIMSCCPDPNPPI 287
>gi|188536002 NLR family, pyrin domain containing 3 isoform d [Homo
sapiens]
Length = 979
Score = 30.8 bits (68), Expect = 2.2
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 192 GALYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNPCI 236
G LY + F+ HC + +V RS L++SC D NP I
Sbjct: 246 GTLYQDRFDYLFYIHCREVSLVTQRS---LGDLIMSCCPDPNPPI 287
>gi|34878693 NLR family, pyrin domain containing 3 isoform a [Homo
sapiens]
Length = 1036
Score = 30.8 bits (68), Expect = 2.2
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 192 GALYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNPCI 236
G LY + F+ HC + +V RS L++SC D NP I
Sbjct: 246 GTLYQDRFDYLFYIHCREVSLVTQRS---LGDLIMSCCPDPNPPI 287
>gi|34878690 NLR family, pyrin domain containing 3 isoform b [Homo
sapiens]
Length = 922
Score = 30.8 bits (68), Expect = 2.2
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 192 GALYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNPCI 236
G LY + F+ HC + +V RS L++SC D NP I
Sbjct: 246 GTLYQDRFDYLFYIHCREVSLVTQRS---LGDLIMSCCPDPNPPI 287
>gi|7705915 tubulin, epsilon 1 [Homo sapiens]
Length = 475
Score = 29.6 bits (65), Expect = 4.9
Identities = 44/201 (21%), Positives = 80/201 (39%), Gaps = 34/201 (16%)
Query: 189 VGH---GALYHSQSPEAF---FAHCPGIK---VVIPRSPFQAKGL---LLSCIEDKNPCI 236
VGH G+LY Q E F HC ++ ++ GL LL +ED+ P +
Sbjct: 111 VGHKVFGSLYQDQILEKFRKSAEHCDCLQCFFIIHSMGGGTGSGLGTFLLKVLEDEFPEV 170
Query: 237 FFEPKILYRAAAEEVPIEPYNIPLSQAEVIQEGSDVTLVAWGTQVHVIREVASMAKE-KL 295
+ +Y + ++V PYN L+ E+ + V + + +I ++ M KL
Sbjct: 171 YRFVTSIYPSGEDDVITSPYNSILAMKELNEHADCVLPIDNQSLFDIISKIDLMVNSGKL 230
Query: 296 GVSCEVIDLRTIIPWDVDTICKSVIKTGRLLISHEAP------LTGGFASEISSTVQEEC 349
G + + L T +G L H+ P + ++S+ + E
Sbjct: 231 GTTVKPKSLVT-------------SSSGALKKQHKKPFDAMNNIVANLLLNLTSSARFEG 277
Query: 350 FLNLEAPISRVCGYDTPFPHI 370
LN++ ++ + PFP +
Sbjct: 278 SLNMD--LNEISMNLVPFPQL 296
>gi|23308587 N-acetylglutamate synthase [Homo sapiens]
Length = 534
Score = 28.9 bits (63), Expect = 8.4
Identities = 22/65 (33%), Positives = 26/65 (40%), Gaps = 7/65 (10%)
Query: 1 MAVVAAAAGWLLRLRAAGAEGHWRRLPGAGLARGFLHPAATVEDAAQRRQVAHFTFQPDP 60
MAVV AA RLR G G RRL R + R+++ QP P
Sbjct: 6 MAVVLRAAAVAPRLRGRGGTGGARRLSCGARRR-------AARGTSPGRRLSTAWSQPQP 58
Query: 61 EPREY 65
P EY
Sbjct: 59 PPEEY 63
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.139 0.437
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,169,575
Number of Sequences: 37866
Number of extensions: 674344
Number of successful extensions: 1380
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1374
Number of HSP's gapped (non-prelim): 18
length of query: 392
length of database: 18,247,518
effective HSP length: 104
effective length of query: 288
effective length of database: 14,309,454
effective search space: 4121122752
effective search space used: 4121122752
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.