Guide to the Human Genome
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Name: BCKDHB Sequence: fasta or formatted (392aa) NCBI GI: 4557353
Description:

branched chain keto acid dehydrogenase E1 beta precursor

Referenced in:

Amino Acid Catabolism

Other entries for this name:
alt mRNA [392aa] branched chain keto acid dehydrogenase E1 beta precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.7         42           4
 C cysteine            3.1         12           1
 D aspartate           4.6         18           1
 E glutamate           6.4         25           2
 F phenylalanine       5.9         23           2
 G glycine             7.9         31           2
 H histidine           2.3          9           1
 I isoleucine          7.4         29           2
 K lysine              4.1         16           1
 L leucine             7.1         28           3
 M methionine          1.0          4           1
 N asparagine          2.3          9           1
 P proline             6.4         25           1
 Q glutamine           3.8         15           1
 R arginine            5.4         21           2
 S serine              5.1         20           2
 T threonine           4.6         18           1
 V valine              7.4         29           2
 W tryptophan          1.5          6           1
 Y tyrosine            3.1         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   branched chain keto acid dehydrogenase E1 beta precur... 
BCKDHB                1.000   branched chain keto acid dehydrogenase E1 beta precu...
PDHB                  0.203   pyruvate dehydrogenase (lipoamide) beta 
TKTL2                 0.037   transketolase-like 2 
TKTL1                 0.023   transketolase-like 1 isoform c 
TKTL1                 0.023   transketolase-like 1 isoform b 
TKTL1                 0.023   transketolase-like 1 isoform a 
DHTKD1                0.018   dehydrogenase E1 and transketolase domain containing...
OGDH                  0.015   oxoglutarate (alpha-ketoglutarate) dehydrogenase (li...
CACNA2D3              0.012   calcium channel, voltage-dependent, alpha 2/delta 3 ...
FOXO6                 0.009   PREDICTED: forkhead box protein O6 
NLRP3                 0.008   NLR family, pyrin domain containing 3 isoform a [Ho...
NLRP3                 0.008   NLR family, pyrin domain containing 3 isoform c [Ho...
NLRP3                 0.008   NLR family, pyrin domain containing 3 isoform d [Ho...
NLRP3                 0.008   NLR family, pyrin domain containing 3 isoform a [Hom...
NLRP3                 0.008   NLR family, pyrin domain containing 3 isoform b [Hom...
TUBE1                 0.006   tubulin, epsilon 1 
NAGS                  0.005   N-acetylglutamate synthase 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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