Guide to the Human Genome
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Name: PDHB Sequence: fasta or formatted (359aa) NCBI GI: 156564403
Description:

pyruvate dehydrogenase (lipoamide) beta

Referenced in:

TCA Cycle

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.6         38           3
 C cysteine            1.7          6           1
 D aspartate           4.2         15           1
 E glutamate           7.0         25           2
 F phenylalanine       4.2         15           1
 G glycine             8.4         30           2
 H histidine           1.9          7           1
 I isoleucine          7.2         26           2
 K lysine              5.3         19           2
 L leucine             6.1         22           2
 M methionine          3.9         14           1
 N asparagine          3.6         13           2
 P proline             6.1         22           2
 Q glutamine           3.3         12           1
 R arginine            5.0         18           2
 S serine              5.0         18           1
 T threonine           3.6         13           1
 V valine              9.2         33           3
 W tryptophan          1.4          5           1
 Y tyrosine            2.2          8           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   pyruvate dehydrogenase (lipoamide) beta 
BCKDHB                0.226   branched chain keto acid dehydrogenase E1 beta precur...
BCKDHB                0.226   branched chain keto acid dehydrogenase E1 beta precu...
TKTL1                 0.050   transketolase-like 1 isoform c 
TKTL1                 0.050   transketolase-like 1 isoform b 
TKTL1                 0.050   transketolase-like 1 isoform a 
TKTL2                 0.047   transketolase-like 2 
TKT                   0.037   transketolase isoform 2 
TKT                   0.037   transketolase isoform 1 
TKT                   0.037   transketolase isoform 1 
SERPINA3              0.007   serpin peptidase inhibitor, clade A, member 3 precur...
PRKG1                 0.007   protein kinase, cGMP-dependent, type I isoform 1 [H...
USP19                 0.006   ubiquitin thioesterase 19 
SPTLC3                0.004   serine palmitoyltransferase, long chain base subuni...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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