Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: CECR1 Sequence: fasta or formatted (511aa) NCBI GI: 29029550
Description:

cat eye syndrome critical region protein 1 isoform a precursor

Not currently referenced in the text

Other entries for this name:
alt prot {270aa} cat eye syndrome critical region protein 1 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5         33           2
 C cysteine            1.0          5           1
 D aspartate           5.3         27           2
 E glutamate           6.5         33           2
 F phenylalanine       5.9         30           2
 G glycine             4.9         25           2
 H histidine           4.3         22           2
 I isoleucine          6.7         34           2
 K lysine              6.3         32           2
 L leucine             9.8         50           3
 M methionine          4.9         25           2
 N asparagine          2.9         15           1
 P proline             4.5         23           2
 Q glutamine           2.3         12           1
 R arginine            5.7         29           1
 S serine              5.7         29           2
 T threonine           5.7         29           2
 V valine              6.7         34           2
 W tryptophan          1.6          8           1
 Y tyrosine            3.1         16           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cat eye syndrome critical region protein 1 isoform a... 
CECR1                 0.500   cat eye syndrome critical region protein 1 isoform b...
ADA                   0.021   adenosine deaminase 
AMPD3                 0.021   adenosine monophosphate deaminase 3 isoform 1A 
AMPD3                 0.021   adenosine monophosphate deaminase 3 isoform 1C [Homo...
AMPD3                 0.021   adenosine monophosphate deaminase 3 isoform 1B [Homo...
AMPD1                 0.013   adenosine monophosphate deaminase 1 (isoform M) [Homo...
ADAL                  0.012   adenosine deaminase-like isoform 2 
ADAL                  0.011   adenosine deaminase-like isoform 1 
AMPD2                 0.011   adenosine monophosphate deaminase 2 (isoform L) isof...
AMPD2                 0.011   adenosine monophosphate deaminase 2 (isoform L) isof...
AMPD2                 0.011   adenosine monophosphate deaminase 2 (isoform L) isof...
SLC30A3               0.006   solute carrier family 30 (zinc transporter), member ...
TJP1                  0.005   tight junction protein 1 isoform b 
TJP1                  0.005   tight junction protein 1 isoform a 
IQCH                  0.005   IQ motif containing H isoform 1 
IQCH                  0.005   IQ motif containing H isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press