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Search of human proteins with 45505145
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|45505145 neuromedin B isoform 2 [Homo sapiens]
(154 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|45505145 neuromedin B isoform 2 [Homo sapiens] 309 7e-85
gi|45505143 neuromedin B isoform 1 [Homo sapiens] 219 7e-58
gi|31542860 gastrin-releasing peptide isoform 1 preproprotein [H... 38 0.003
gi|60498999 gastrin-releasing peptide isoform 3 preproprotein [H... 38 0.003
gi|60498997 gastrin-releasing peptide isoform 2 preproprotein [H... 38 0.003
gi|239740875 PREDICTED: hypothetical protein XP_002344061 [Homo ... 30 0.63
gi|239740759 PREDICTED: hypothetical protein [Homo sapiens] 30 0.63
gi|239754291 PREDICTED: hypothetical protein [Homo sapiens] 30 0.82
gi|239748828 PREDICTED: hypothetical protein XP_002346813 [Homo ... 30 0.82
gi|239742859 PREDICTED: hypothetical protein XP_002342682 [Homo ... 30 0.82
gi|239740809 PREDICTED: hypothetical protein [Homo sapiens] 30 0.82
gi|239740705 PREDICTED: hypothetical protein [Homo sapiens] 30 0.82
gi|239513967 PREDICTED: hypothetical protein [Homo sapiens] 30 0.82
gi|134152694 guanylate cyclase 2F [Homo sapiens] 30 0.82
gi|150418005 protein tyrosine phosphatase, non-receptor type 21 ... 29 1.4
gi|5031587 adenomatosis polyposis coli 2 [Homo sapiens] 29 1.4
gi|167466177 cell division cycle protein 27 isoform 1 [Homo sapi... 28 2.4
gi|167466175 cell division cycle protein 27 isoform 2 [Homo sapi... 28 2.4
gi|239754149 PREDICTED: hypothetical protein XP_002345897 [Homo ... 28 3.1
gi|239748685 PREDICTED: hypothetical protein XP_002346753 [Homo ... 28 3.1
gi|239742708 PREDICTED: hypothetical protein XP_002342610 [Homo ... 28 3.1
gi|153070262 meprin A alpha [Homo sapiens] 28 3.1
gi|115511057 hypothetical protein LOC256643 [Homo sapiens] 28 3.1
gi|23097308 spectrin repeat containing, nuclear envelope 1 isofo... 28 4.1
gi|154426272 hypothetical protein LOC54540 [Homo sapiens] 28 4.1
gi|18375660 protein tyrosine phosphatase, non-receptor type 7 is... 27 6.9
gi|222352170 neuraminidase 2 [Homo sapiens] 27 6.9
gi|116805342 human immunodeficiency virus type I enhancer bindin... 27 6.9
gi|34916000 FERM domain containing 7 [Homo sapiens] 27 9.1
>gi|45505145 neuromedin B isoform 2 [Homo sapiens]
Length = 154
Score = 309 bits (791), Expect = 7e-85
Identities = 154/154 (100%), Positives = 154/154 (100%)
Query: 1 MARRAGGARMFGSLLLFALLAAGVAPLSWDLPEPRSRASKIRVHSRGNLWATGHFMGKKS 60
MARRAGGARMFGSLLLFALLAAGVAPLSWDLPEPRSRASKIRVHSRGNLWATGHFMGKKS
Sbjct: 1 MARRAGGARMFGSLLLFALLAAGVAPLSWDLPEPRSRASKIRVHSRGNLWATGHFMGKKS 60
Query: 61 LEPSSPSPLGTAPHTSLRDQRLQLSHDLLGILLLKKALGVSLSRPAPQIQEAAGTNTAEM 120
LEPSSPSPLGTAPHTSLRDQRLQLSHDLLGILLLKKALGVSLSRPAPQIQEAAGTNTAEM
Sbjct: 61 LEPSSPSPLGTAPHTSLRDQRLQLSHDLLGILLLKKALGVSLSRPAPQIQEAAGTNTAEM 120
Query: 121 TPIMGQTQQRGLDCAHPGKVLNGTLLMAPSGCKS 154
TPIMGQTQQRGLDCAHPGKVLNGTLLMAPSGCKS
Sbjct: 121 TPIMGQTQQRGLDCAHPGKVLNGTLLMAPSGCKS 154
>gi|45505143 neuromedin B isoform 1 [Homo sapiens]
Length = 121
Score = 219 bits (558), Expect = 7e-58
Identities = 110/110 (100%), Positives = 110/110 (100%)
Query: 1 MARRAGGARMFGSLLLFALLAAGVAPLSWDLPEPRSRASKIRVHSRGNLWATGHFMGKKS 60
MARRAGGARMFGSLLLFALLAAGVAPLSWDLPEPRSRASKIRVHSRGNLWATGHFMGKKS
Sbjct: 1 MARRAGGARMFGSLLLFALLAAGVAPLSWDLPEPRSRASKIRVHSRGNLWATGHFMGKKS 60
Query: 61 LEPSSPSPLGTAPHTSLRDQRLQLSHDLLGILLLKKALGVSLSRPAPQIQ 110
LEPSSPSPLGTAPHTSLRDQRLQLSHDLLGILLLKKALGVSLSRPAPQIQ
Sbjct: 61 LEPSSPSPLGTAPHTSLRDQRLQLSHDLLGILLLKKALGVSLSRPAPQIQ 110
>gi|31542860 gastrin-releasing peptide isoform 1 preproprotein
[Homo sapiens]
Length = 148
Score = 38.1 bits (87), Expect = 0.003
Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 6/87 (6%)
Query: 14 LLLFALLAAGVAPLSWDLPEPRSRASKI-RVHSRGNLWATGHFMGKKSL-EPSSPSPLGT 71
L+L AL+ +AP +P P + + +++ RGN WA GH MGKKS E SS S G+
Sbjct: 8 LVLLALVLC-LAPRGRAVPLPAGGGTVLTKMYPRGNHWAVGHLMGKKSTGESSSVSERGS 66
Query: 72 APHTSLRD--QRLQLSHDLLGILLLKK 96
LR+ + + + +LLG++ K+
Sbjct: 67 LKQ-QLREYIRWEEAARNLLGLIEAKE 92
>gi|60498999 gastrin-releasing peptide isoform 3 preproprotein
[Homo sapiens]
Length = 138
Score = 38.1 bits (87), Expect = 0.003
Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 6/87 (6%)
Query: 14 LLLFALLAAGVAPLSWDLPEPRSRASKI-RVHSRGNLWATGHFMGKKSL-EPSSPSPLGT 71
L+L AL+ +AP +P P + + +++ RGN WA GH MGKKS E SS S G+
Sbjct: 8 LVLLALVLC-LAPRGRAVPLPAGGGTVLTKMYPRGNHWAVGHLMGKKSTGESSSVSERGS 66
Query: 72 APHTSLRD--QRLQLSHDLLGILLLKK 96
LR+ + + + +LLG++ K+
Sbjct: 67 LKQ-QLREYIRWEEAARNLLGLIEAKE 92
>gi|60498997 gastrin-releasing peptide isoform 2 preproprotein
[Homo sapiens]
Length = 141
Score = 38.1 bits (87), Expect = 0.003
Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 6/87 (6%)
Query: 14 LLLFALLAAGVAPLSWDLPEPRSRASKI-RVHSRGNLWATGHFMGKKSL-EPSSPSPLGT 71
L+L AL+ +AP +P P + + +++ RGN WA GH MGKKS E SS S G+
Sbjct: 8 LVLLALVLC-LAPRGRAVPLPAGGGTVLTKMYPRGNHWAVGHLMGKKSTGESSSVSERGS 66
Query: 72 APHTSLRD--QRLQLSHDLLGILLLKK 96
LR+ + + + +LLG++ K+
Sbjct: 67 LKQ-QLREYIRWEEAARNLLGLIEAKE 92
>gi|239740875 PREDICTED: hypothetical protein XP_002344061 [Homo
sapiens]
Length = 153
Score = 30.4 bits (67), Expect = 0.63
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 51 ATGHFMGKKSLEPSSPSPLGTAPHTSLRDQRLQLSHDLLGILLLKKALGVSLSRPAPQIQ 110
+T G S SP+P G+A H++ +R D+ G+LL AL SR I
Sbjct: 21 STAPVAGTPSRISHSPAP-GSASHSTSHRERPASRCDVDGVLLFTDALQAGQSRLLRTI- 78
Query: 111 EAAGTNTAEMTPI 123
++GT T TPI
Sbjct: 79 TSSGTPTLPATPI 91
>gi|239740759 PREDICTED: hypothetical protein [Homo sapiens]
Length = 153
Score = 30.4 bits (67), Expect = 0.63
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 51 ATGHFMGKKSLEPSSPSPLGTAPHTSLRDQRLQLSHDLLGILLLKKALGVSLSRPAPQIQ 110
+T G S SP+P G+A H++ +R D+ G+LL AL SR I
Sbjct: 21 STAPVAGTPSRISHSPAP-GSASHSTSHRERPASRCDVDGVLLFTDALQAGQSRLLRTI- 78
Query: 111 EAAGTNTAEMTPI 123
++GT T TPI
Sbjct: 79 TSSGTPTLPATPI 91
>gi|239754291 PREDICTED: hypothetical protein [Homo sapiens]
Length = 153
Score = 30.0 bits (66), Expect = 0.82
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 51 ATGHFMGKKSLEPSSPSPLGTAPHTSLRDQRLQLSHDLLGILLLKKALGVSLSRPAPQIQ 110
+T G S SP+P G+A H++ +R D+ G+LL AL SR +
Sbjct: 21 STAPVAGTPSRISHSPAP-GSASHSTSHRERPASRCDVDGVLLFTDALQAGQSRLLRTV- 78
Query: 111 EAAGTNTAEMTPI 123
++GT T TPI
Sbjct: 79 TSSGTPTLPATPI 91
>gi|239748828 PREDICTED: hypothetical protein XP_002346813 [Homo
sapiens]
Length = 153
Score = 30.0 bits (66), Expect = 0.82
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 51 ATGHFMGKKSLEPSSPSPLGTAPHTSLRDQRLQLSHDLLGILLLKKALGVSLSRPAPQIQ 110
+T G S SP+P G+A H++ +R D+ G+LL AL SR +
Sbjct: 21 STAPVAGTPSRISHSPAP-GSASHSTSHRERPASRCDVDGVLLFTDALQAGQSRLLRTV- 78
Query: 111 EAAGTNTAEMTPI 123
++GT T TPI
Sbjct: 79 TSSGTPTLPATPI 91
>gi|239742859 PREDICTED: hypothetical protein XP_002342682 [Homo
sapiens]
Length = 153
Score = 30.0 bits (66), Expect = 0.82
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 51 ATGHFMGKKSLEPSSPSPLGTAPHTSLRDQRLQLSHDLLGILLLKKALGVSLSRPAPQIQ 110
+T G S SP+P G+A H++ +R D+ G+LL AL SR +
Sbjct: 21 STAPVAGTPSRISHSPAP-GSASHSTSHRERPASRCDVDGVLLFTDALQAGQSRLLRTV- 78
Query: 111 EAAGTNTAEMTPI 123
++GT T TPI
Sbjct: 79 TSSGTPTLPATPI 91
>gi|239740809 PREDICTED: hypothetical protein [Homo sapiens]
Length = 153
Score = 30.0 bits (66), Expect = 0.82
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 51 ATGHFMGKKSLEPSSPSPLGTAPHTSLRDQRLQLSHDLLGILLLKKALGVSLSRPAPQIQ 110
+T G S SP+P G+A H++ +R D+ G+LL AL SR +
Sbjct: 21 STAPVAGTPSRISHSPAP-GSASHSTSHRERPASRCDVDGVLLFTDALQAGQSRLLRTV- 78
Query: 111 EAAGTNTAEMTPI 123
++GT T TPI
Sbjct: 79 TSSGTPTLPATPI 91
>gi|239740705 PREDICTED: hypothetical protein [Homo sapiens]
Length = 153
Score = 30.0 bits (66), Expect = 0.82
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 51 ATGHFMGKKSLEPSSPSPLGTAPHTSLRDQRLQLSHDLLGILLLKKALGVSLSRPAPQIQ 110
+T G S SP+P G+A H++ +R D+ G+LL AL SR +
Sbjct: 21 STAPVAGTPSRISHSPAP-GSASHSTSHRERPASRCDVDGVLLFTDALQAGQSRLLRTV- 78
Query: 111 EAAGTNTAEMTPI 123
++GT T TPI
Sbjct: 79 TSSGTPTLPATPI 91
>gi|239513967 PREDICTED: hypothetical protein [Homo sapiens]
Length = 153
Score = 30.0 bits (66), Expect = 0.82
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 51 ATGHFMGKKSLEPSSPSPLGTAPHTSLRDQRLQLSHDLLGILLLKKALGVSLSRPAPQIQ 110
+T G S SP+P G+A H++ +R D+ G+LL AL SR +
Sbjct: 21 STAPVAGTPSRISHSPAP-GSASHSTSHRERPASRCDVDGVLLFTDALQAGQSRLLRTV- 78
Query: 111 EAAGTNTAEMTPI 123
++GT T TPI
Sbjct: 79 TSSGTPTLPATPI 91
>gi|134152694 guanylate cyclase 2F [Homo sapiens]
Length = 1108
Score = 30.0 bits (66), Expect = 0.82
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 5/81 (6%)
Query: 74 HTSLRDQRLQLSHDL-LGILLLKKALGVSLSRPAPQIQEAAGTNTAEMTP----IMGQTQ 128
HT+ R SH L +G++L S+ + +I +A M I G+TQ
Sbjct: 200 HTANRVASALRSHGLPVGVVLTTGQDSQSMRKALQRIHQADRIRIIIMCMHSALIGGETQ 259
Query: 129 QRGLDCAHPGKVLNGTLLMAP 149
L+CAH K+ +GT + P
Sbjct: 260 MHLLECAHDLKMTDGTYVFVP 280
>gi|150418005 protein tyrosine phosphatase, non-receptor type 21
[Homo sapiens]
Length = 1174
Score = 29.3 bits (64), Expect = 1.4
Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 6/89 (6%)
Query: 68 PLGTAPHTSLRDQR----LQLSHDLLGILLLKKALGVSLSRPAPQIQEAAGTNT--AEMT 121
PL A H L + LSH L G+ L ++ L S + AP+ + E T
Sbjct: 623 PLTAARHAQLHKRNSIEVAGLSHGLEGLRLKERTLSASAAEVAPRAVSVGSQPSVFTERT 682
Query: 122 PIMGQTQQRGLDCAHPGKVLNGTLLMAPS 150
G + GL H + + T+L+ S
Sbjct: 683 QREGPEEAEGLRYGHKKSLSDATMLIHSS 711
>gi|5031587 adenomatosis polyposis coli 2 [Homo sapiens]
Length = 2303
Score = 29.3 bits (64), Expect = 1.4
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 19/87 (21%)
Query: 54 HFMGKKSLEPSSPSPLGTAPHTSLRDQRLQLSHDLLGILLL-------------KKALGV 100
HF G + E P+P G+ P + DQ L+L + LG + ++AL V
Sbjct: 1314 HFAGHRRRE-EGPAPTGSRPRGAA-DQELELLRECLGAAVPARLRKVASALVPGRRALPV 1371
Query: 101 SL----SRPAPQIQEAAGTNTAEMTPI 123
+ PAP ++ + T++AE TP+
Sbjct: 1372 PVYMLVPAPAPAQEDDSCTDSAEGTPV 1398
>gi|167466177 cell division cycle protein 27 isoform 1 [Homo
sapiens]
Length = 830
Score = 28.5 bits (62), Expect = 2.4
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 116 NTAEMTPIMGQTQQRGLDCAHPGKVLNGTLLMAPS 150
N+ E+TPI+ QTQ G + +VL+ T+ P+
Sbjct: 344 NSREVTPILAQTQSSGPQTSTTPQVLSPTITSPPN 378
>gi|167466175 cell division cycle protein 27 isoform 2 [Homo
sapiens]
Length = 824
Score = 28.5 bits (62), Expect = 2.4
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 116 NTAEMTPIMGQTQQRGLDCAHPGKVLNGTLLMAPS 150
N+ E+TPI+ QTQ G + +VL+ T+ P+
Sbjct: 338 NSREVTPILAQTQSSGPQTSTTPQVLSPTITSPPN 372
>gi|239754149 PREDICTED: hypothetical protein XP_002345897 [Homo
sapiens]
Length = 274
Score = 28.1 bits (61), Expect = 3.1
Identities = 25/69 (36%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
Query: 58 KKSLEPSSPSPLGTAPHTSLRDQRLQLSHDLLGILLLKKALGVSLSRPAPQIQEAAGTNT 117
++ LEP P G A D RL S + LL+K+L S SRP P Q+ AG
Sbjct: 124 RQELEPQEGGPPGAAEEA---DPRLADSTGTGRLCLLQKSLLGSPSRPLP--QQDAGIRL 178
Query: 118 AEMTPIMGQ 126
T GQ
Sbjct: 179 CIPTAHKGQ 187
>gi|239748685 PREDICTED: hypothetical protein XP_002346753 [Homo
sapiens]
Length = 274
Score = 28.1 bits (61), Expect = 3.1
Identities = 25/69 (36%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
Query: 58 KKSLEPSSPSPLGTAPHTSLRDQRLQLSHDLLGILLLKKALGVSLSRPAPQIQEAAGTNT 117
++ LEP P G A D RL S + LL+K+L S SRP P Q+ AG
Sbjct: 124 RQELEPQEGGPPGAAEEA---DPRLADSTGTGRLCLLQKSLLGSPSRPLP--QQDAGIRL 178
Query: 118 AEMTPIMGQ 126
T GQ
Sbjct: 179 CIPTAHKGQ 187
>gi|239742708 PREDICTED: hypothetical protein XP_002342610 [Homo
sapiens]
Length = 274
Score = 28.1 bits (61), Expect = 3.1
Identities = 25/69 (36%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
Query: 58 KKSLEPSSPSPLGTAPHTSLRDQRLQLSHDLLGILLLKKALGVSLSRPAPQIQEAAGTNT 117
++ LEP P G A D RL S + LL+K+L S SRP P Q+ AG
Sbjct: 124 RQELEPQEGGPPGAAEEA---DPRLADSTGTGRLCLLQKSLLGSPSRPLP--QQDAGIRL 178
Query: 118 AEMTPIMGQ 126
T GQ
Sbjct: 179 CIPTAHKGQ 187
>gi|153070262 meprin A alpha [Homo sapiens]
Length = 746
Score = 28.1 bits (61), Expect = 3.1
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 77 LRDQRLQLSHDLLGILLLKKALGVSLSRPAPQIQEAAGTNTAEM 120
L+ Q Q+S + G +L++AL VSLS+ P Q+ + NT +
Sbjct: 618 LQGQEQQVSEEGSGKAMLEEALPVSLSQGQPSRQKRSVENTGPL 661
>gi|115511057 hypothetical protein LOC256643 [Homo sapiens]
Length = 682
Score = 28.1 bits (61), Expect = 3.1
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 7/43 (16%)
Query: 26 PLSWDLPEPRSRASKIRVHSRGNLWATGHFMGKKSLEPSSPSP 68
P++W + + SK R+ SRGN++ +S E SPSP
Sbjct: 46 PVAWRMDSEKHGQSKPRIPSRGNIY-------YQSYEHRSPSP 81
>gi|23097308 spectrin repeat containing, nuclear envelope 1 isoform
2 [Homo sapiens]
Length = 8749
Score = 27.7 bits (60), Expect = 4.1
Identities = 24/98 (24%), Positives = 46/98 (46%), Gaps = 3/98 (3%)
Query: 31 LPEPRSRASKIRVHSRGNLWATGHFM-GKKSLEPSSPSPLGTAPHTSLRDQRLQLSHDLL 89
LP + R K R+H+ N+ F+ G+KS+ SP L T + D R + L+
Sbjct: 75 LPCEQGRRMK-RIHAVANIGTALKFLEGRKSMHRGSPIKLVNINSTDIADGRPSIVLGLM 133
Query: 90 GILLLKKALGVSLSRPAPQIQEAAGTNTAEMTPIMGQT 127
++L + L+ PQ+Q + + ++ + + +T
Sbjct: 134 WTIILYFQI-EELTSNLPQLQSLSSSASSVDSIVSSET 170
>gi|154426272 hypothetical protein LOC54540 [Homo sapiens]
Length = 789
Score = 27.7 bits (60), Expect = 4.1
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 52 TGHFMGKKSLEPSSPSPLGTAPHTSL 77
TGH SL PS PS G+ PH L
Sbjct: 139 TGHHPQPASLIPSHPSSFGSPPHPHL 164
>gi|18375660 protein tyrosine phosphatase, non-receptor type 7
isoform 2 [Homo sapiens]
Length = 399
Score = 26.9 bits (58), Expect = 6.9
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 13/68 (19%)
Query: 65 SPSPLGTAPHTSLRDQRLQLSHDLLGILLLKKALGVSLSRPAPQ---------IQEAAGT 115
S PLG APH S+ +Q L +LG ++++P P+ +QE G+
Sbjct: 28 SEPPLGPAPHLSM----VQAHGGRSRAQPLTLSLGAAMTQPPPEKTPAKKHVRLQERRGS 83
Query: 116 NTAEMTPI 123
N A M +
Sbjct: 84 NVALMLDV 91
>gi|222352170 neuraminidase 2 [Homo sapiens]
Length = 380
Score = 26.9 bits (58), Expect = 6.9
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 44 HSRGNLWATGHFMGKKSLE 62
H G WA GHF+ + +LE
Sbjct: 200 HDHGRTWARGHFVAQDTLE 218
>gi|116805342 human immunodeficiency virus type I enhancer binding
protein 1 [Homo sapiens]
Length = 2718
Score = 26.9 bits (58), Expect = 6.9
Identities = 27/73 (36%), Positives = 32/73 (43%), Gaps = 17/73 (23%)
Query: 26 PLSWDLPEPRSRASKI------RVHSRGNLWATGHFMGKKSLEPSSPSPLGTAPHTSLRD 79
P S+D PEP RAS + R G+L G S E S PS G+ PH
Sbjct: 1145 PNSFDKPEPFERASPVSFQELNRTGKSGSLKVIG-----ISQEESHPSRDGSHPH----- 1194
Query: 80 QRLQLSHDLLGIL 92
+L LS L G L
Sbjct: 1195 -QLALSDALRGEL 1206
>gi|34916000 FERM domain containing 7 [Homo sapiens]
Length = 714
Score = 26.6 bits (57), Expect = 9.1
Identities = 23/99 (23%), Positives = 42/99 (42%), Gaps = 5/99 (5%)
Query: 30 DLPEPRSRASKIRVHSRGNLWATGHFMGKKSLEPSSPSPLGTAPHTSLRDQRLQLSHDLL 89
D P R S IR R + + ++ +++P+ SP + +D LQ+ + +
Sbjct: 500 DKPPQVPRWSPIRAEERTSPHS---YVEPTAMKPAERSPRNIRMKSFQQD--LQVLQEAI 554
Query: 90 GILLLKKALGVSLSRPAPQIQEAAGTNTAEMTPIMGQTQ 128
+ + V L P +++A N E TP Q+Q
Sbjct: 555 ARTSGRSNINVGLEEEDPNLEDAFVCNIQEQTPKRSQSQ 593
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.133 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,564,208
Number of Sequences: 37866
Number of extensions: 305156
Number of successful extensions: 848
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 836
Number of HSP's gapped (non-prelim): 30
length of query: 154
length of database: 18,247,518
effective HSP length: 93
effective length of query: 61
effective length of database: 14,725,980
effective search space: 898284780
effective search space used: 898284780
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.