Guide to the Human Genome
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Name: NMB Sequence: fasta or formatted (121aa) NCBI GI: 45505143
Description:

neuromedin B isoform 1

Referenced in:

Peptide and Protein G-coupled Signals

Other entries for this name:
alt prot [154aa] neuromedin B isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.9         12           2
 C cysteine            0.0          0           0
 D aspartate           2.5          3           1
 E glutamate           1.7          2           1
 F phenylalanine       2.5          3           1
 G glycine             8.3         10           2
 H histidine           3.3          4           1
 I isoleucine          3.3          4           1
 K lysine              5.0          6           2
 L leucine            19.0         23           3
 M methionine          2.5          3           1
 N asparagine          0.8          1           1
 P proline             7.4          9           1
 Q glutamine           5.0          6           1
 R arginine            9.9         12           2
 S serine             10.7         13           2
 T threonine           2.5          3           1
 V valine              3.3          4           1
 W tryptophan          1.7          2           1
 Y tyrosine            0.8          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   neuromedin B isoform 1 
NMB                   0.907   neuromedin B isoform 2 
GRP                   0.061   gastrin-releasing peptide isoform 1 preproprotein [H...
GRP                   0.061   gastrin-releasing peptide isoform 3 preproprotein [H...
GRP                   0.061   gastrin-releasing peptide isoform 2 preproprotein [H...
CXorf23               0.014   hypothetical protein LOC256643 
LOC100291948          0.014   PREDICTED: hypothetical protein XP_002345897 
LOC100291512          0.014   PREDICTED: hypothetical protein XP_002346753 
LOC100288180          0.014   PREDICTED: hypothetical protein XP_002342610 
FLJ10404              0.014   hypothetical protein LOC54540 
NEU2                  0.009   neuraminidase 2 
HIVEP1                0.009   human immunodeficiency virus type I enhancer bindin...
SYNE1                 0.009   spectrin repeat containing, nuclear envelope 1 isofo...
LOC100291660          0.005   PREDICTED: hypothetical protein XP_002345223 
LOC100289147          0.005   PREDICTED: hypothetical protein 
LOC100289147          0.005   PREDICTED: hypothetical protein XP_002343718 
ZNF862                0.005   zinc finger protein 862 
C1orf104              0.005   hypothetical protein LOC284618 
C3                    0.005   complement component 3 precursor 
SFRS2IP               0.005   splicing factor, arginine/serine-rich 2, interactin...
LOC100133511          0.005   PREDICTED: similar to complement component C3, part...
B4GALT3               0.005   UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 3 ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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