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Search of human proteins with 45439365
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|45439365 transmembrane protein 180 [Homo sapiens]
(517 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|45439365 transmembrane protein 180 [Homo sapiens] 1050 0.0
gi|209862839 Fc fragment of IgG, receptor, transporter, alpha [H... 37 0.043
gi|4758346 Fc fragment of IgG, receptor, transporter, alpha [Hom... 37 0.043
gi|153945782 natural cytotoxicity triggering receptor 2 [Homo sa... 33 0.82
gi|5729929 matrix metalloproteinase 24 preproprotein [Homo sapiens] 31 2.4
gi|134304851 glutamate receptor, ionotropic, AMPA 2 isoform 3 [H... 30 4.1
gi|134304848 glutamate receptor, ionotropic, AMPA 2 isoform 2 pr... 30 4.1
gi|74275354 glutamate receptor, ionotropic, AMPA 2 isoform 1 pre... 30 4.1
gi|126507091 LATS, large tumor suppressor, homolog 2 [Homo sapiens] 30 4.1
gi|34916028 solute carrier family 16 (monocarboxylic acid transp... 30 5.3
gi|117168277 amino acid transporter system A1 [Homo sapiens] 30 5.3
gi|117168275 amino acid transporter system A1 [Homo sapiens] 30 5.3
gi|157785645 SPEG complex locus [Homo sapiens] 30 5.3
gi|112734870 hypothetical protein LOC57648 [Homo sapiens] 30 5.3
gi|239756083 PREDICTED: hypothetical protein [Homo sapiens] 30 6.9
gi|239750612 PREDICTED: hypothetical protein [Homo sapiens] 30 6.9
gi|239744919 PREDICTED: hypothetical protein XP_002343307 [Homo ... 30 6.9
gi|38455416 fms-related tyrosine kinase 3 ligand [Homo sapiens] 30 6.9
gi|52317168 olfactory receptor, family 1, subfamily S, member 2 ... 30 6.9
gi|194473724 adaptor-related protein complex 1, mu 1 subunit iso... 29 9.0
gi|194239645 spinster homolog 3 [Homo sapiens] 29 9.0
gi|110611910 leukocyte immunoglobulin-like receptor, subfamily A... 29 9.0
gi|21361825 G protein-coupled receptor 137 [Homo sapiens] 29 9.0
gi|32469509 zinc finger and BTB domain containing 12 [Homo sapiens] 29 9.0
>gi|45439365 transmembrane protein 180 [Homo sapiens]
Length = 517
Score = 1050 bits (2714), Expect = 0.0
Identities = 517/517 (100%), Positives = 517/517 (100%)
Query: 1 MGLGQPQAWLLGLPTAVVYGSLALFTTILHNVFLLYYVDTFVSVYKINKMAFWVGETVFL 60
MGLGQPQAWLLGLPTAVVYGSLALFTTILHNVFLLYYVDTFVSVYKINKMAFWVGETVFL
Sbjct: 1 MGLGQPQAWLLGLPTAVVYGSLALFTTILHNVFLLYYVDTFVSVYKINKMAFWVGETVFL 60
Query: 61 LWNSLNDPLFGWLSDRQFLSSQPRSGAGLSSRAVVLARVQALGWHGPLLALSFLAFWVPW 120
LWNSLNDPLFGWLSDRQFLSSQPRSGAGLSSRAVVLARVQALGWHGPLLALSFLAFWVPW
Sbjct: 61 LWNSLNDPLFGWLSDRQFLSSQPRSGAGLSSRAVVLARVQALGWHGPLLALSFLAFWVPW 120
Query: 121 APAGLQFLLCLCLYDGFLTLVDLHHHALLADLALSAHDRTHLNFYCSLFSAAGSLSVFAS 180
APAGLQFLLCLCLYDGFLTLVDLHHHALLADLALSAHDRTHLNFYCSLFSAAGSLSVFAS
Sbjct: 121 APAGLQFLLCLCLYDGFLTLVDLHHHALLADLALSAHDRTHLNFYCSLFSAAGSLSVFAS 180
Query: 181 YAFWNKEDFSSFRAFCVTLAVSSGLGFLGATQLLRRRVEAARKDPGCSGLVVDSGLCGEE 240
YAFWNKEDFSSFRAFCVTLAVSSGLGFLGATQLLRRRVEAARKDPGCSGLVVDSGLCGEE
Sbjct: 181 YAFWNKEDFSSFRAFCVTLAVSSGLGFLGATQLLRRRVEAARKDPGCSGLVVDSGLCGEE 240
Query: 241 LLVGSEEADSITLGRYLRQLARHRNFLWFVSMDLVQVFHCHFNSNFFPLFLEHLLSDHIS 300
LLVGSEEADSITLGRYLRQLARHRNFLWFVSMDLVQVFHCHFNSNFFPLFLEHLLSDHIS
Sbjct: 241 LLVGSEEADSITLGRYLRQLARHRNFLWFVSMDLVQVFHCHFNSNFFPLFLEHLLSDHIS 300
Query: 301 LSTGSILLGLSYVAPHLNNLYFLSLCRRWGVYAVVRGLFLLKLGLSLLMLLAGPDHLSLL 360
LSTGSILLGLSYVAPHLNNLYFLSLCRRWGVYAVVRGLFLLKLGLSLLMLLAGPDHLSLL
Sbjct: 301 LSTGSILLGLSYVAPHLNNLYFLSLCRRWGVYAVVRGLFLLKLGLSLLMLLAGPDHLSLL 360
Query: 361 CLFIASNRVFTEGTCKLLTLVVTDLVDEDLVLNHRKQAASALLFGMVALVTKPGQTFAPL 420
CLFIASNRVFTEGTCKLLTLVVTDLVDEDLVLNHRKQAASALLFGMVALVTKPGQTFAPL
Sbjct: 361 CLFIASNRVFTEGTCKLLTLVVTDLVDEDLVLNHRKQAASALLFGMVALVTKPGQTFAPL 420
Query: 421 LGTWLLCFYTGHDLFQQSLITPVGSAHPWPEPPAPAPAQAPTLRQGCFYLLVLVPITCAL 480
LGTWLLCFYTGHDLFQQSLITPVGSAHPWPEPPAPAPAQAPTLRQGCFYLLVLVPITCAL
Sbjct: 421 LGTWLLCFYTGHDLFQQSLITPVGSAHPWPEPPAPAPAQAPTLRQGCFYLLVLVPITCAL 480
Query: 481 LQLFTWSQFTLHGRRLHMVKAQRQNLSQAQTLDVKMV 517
LQLFTWSQFTLHGRRLHMVKAQRQNLSQAQTLDVKMV
Sbjct: 481 LQLFTWSQFTLHGRRLHMVKAQRQNLSQAQTLDVKMV 517
>gi|209862839 Fc fragment of IgG, receptor, transporter, alpha [Homo
sapiens]
Length = 365
Score = 37.0 bits (84), Expect = 0.043
Identities = 36/115 (31%), Positives = 53/115 (46%), Gaps = 13/115 (11%)
Query: 1 MGLGQPQAWLLGLPTAVVYGSLALFTTILHNVFLLYYVDTFVSVYKINKMAFWV----GE 56
MG+ +PQ W LGL ++ GSL + ++ LLY++ T VS AFWV G
Sbjct: 1 MGVPRPQPWALGLLLFLLPGSLGAES----HLSLLYHL-TAVSSPAPGTPAFWVSGWLGP 55
Query: 57 TVFLLWNSLN---DPLFGWLSDRQFLSSQPRSGAGLS-SRAVVLARVQALGWHGP 107
+L +NSL +P W+ + Q + L + L +ALG GP
Sbjct: 56 QQYLSYNSLRGEAEPCGAWVWENQVSWYWEKETTDLRIKEKLFLEAFKALGGKGP 110
>gi|4758346 Fc fragment of IgG, receptor, transporter, alpha [Homo
sapiens]
Length = 365
Score = 37.0 bits (84), Expect = 0.043
Identities = 36/115 (31%), Positives = 53/115 (46%), Gaps = 13/115 (11%)
Query: 1 MGLGQPQAWLLGLPTAVVYGSLALFTTILHNVFLLYYVDTFVSVYKINKMAFWV----GE 56
MG+ +PQ W LGL ++ GSL + ++ LLY++ T VS AFWV G
Sbjct: 1 MGVPRPQPWALGLLLFLLPGSLGAES----HLSLLYHL-TAVSSPAPGTPAFWVSGWLGP 55
Query: 57 TVFLLWNSLN---DPLFGWLSDRQFLSSQPRSGAGLS-SRAVVLARVQALGWHGP 107
+L +NSL +P W+ + Q + L + L +ALG GP
Sbjct: 56 QQYLSYNSLRGEAEPCGAWVWENQVSWYWEKETTDLRIKEKLFLEAFKALGGKGP 110
>gi|153945782 natural cytotoxicity triggering receptor 2 [Homo
sapiens]
Length = 276
Score = 32.7 bits (73), Expect = 0.82
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 437 QSLITPVGSAHPWPEPPA----PAPAQAPTLRQGCFYLLVLVPITCALL 481
QS + P A PE P+ P+ Q TLR G + LVP+ C LL
Sbjct: 153 QSCVPPTAGARQAPESPSTIPVPSQPQNSTLRPGPAAPIALVPVFCGLL 201
>gi|5729929 matrix metalloproteinase 24 preproprotein [Homo sapiens]
Length = 645
Score = 31.2 bits (69), Expect = 2.4
Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 444 GSAHPWPEPPAPAPAQAP---TLRQGCFYLLVLVPITCAL 480
G A P P PP P P QAP R LL+L+P C L
Sbjct: 7 GRAAPGPPPPPPPPGQAPRWSRWRVPGRLLLLLLPALCCL 46
>gi|134304851 glutamate receptor, ionotropic, AMPA 2 isoform 3 [Homo
sapiens]
Length = 836
Score = 30.4 bits (67), Expect = 4.1
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
Query: 163 NFYCSLFSAAGSLSVFASYAFWNKEDFSSFRAFCVTLAVS 202
N +CS FS V+A + F++K+ ++ +FC TL VS
Sbjct: 28 NAFCSQFSRG----VYAIFGFYDKKSVNTITSFCGTLHVS 63
>gi|134304848 glutamate receptor, ionotropic, AMPA 2 isoform 2
precursor [Homo sapiens]
Length = 883
Score = 30.4 bits (67), Expect = 4.1
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
Query: 163 NFYCSLFSAAGSLSVFASYAFWNKEDFSSFRAFCVTLAVS 202
N +CS FS V+A + F++K+ ++ +FC TL VS
Sbjct: 75 NAFCSQFSRG----VYAIFGFYDKKSVNTITSFCGTLHVS 110
>gi|74275354 glutamate receptor, ionotropic, AMPA 2 isoform 1
precursor [Homo sapiens]
Length = 883
Score = 30.4 bits (67), Expect = 4.1
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
Query: 163 NFYCSLFSAAGSLSVFASYAFWNKEDFSSFRAFCVTLAVS 202
N +CS FS V+A + F++K+ ++ +FC TL VS
Sbjct: 75 NAFCSQFSRG----VYAIFGFYDKKSVNTITSFCGTLHVS 110
>gi|126507091 LATS, large tumor suppressor, homolog 2 [Homo sapiens]
Length = 1088
Score = 30.4 bits (67), Expect = 4.1
Identities = 14/22 (63%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Query: 441 TPVGSAHP-WPEPPAPAPAQAP 461
T VG +HP W PAPAPA AP
Sbjct: 456 TAVGPSHPAWVPAPAPAPAPAP 477
>gi|34916028 solute carrier family 16 (monocarboxylic acid
transporters), member 9 [Homo sapiens]
Length = 509
Score = 30.0 bits (66), Expect = 5.3
Identities = 26/72 (36%), Positives = 33/72 (45%), Gaps = 8/72 (11%)
Query: 10 LLGLPTAVVYGSLALFTTILH----NVFLLYYVDTFVSVYKINKMAFWVGETVFL--LWN 63
L +P A Y +LAL + IL N + YV T I K+A G +F L N
Sbjct: 386 LCAIPFAKSYVTLALLSGILGFLTGNWSIFPYVTT--KTVGIEKLAHAYGILMFFAGLGN 443
Query: 64 SLNDPLFGWLSD 75
SL P+ GW D
Sbjct: 444 SLGPPIVGWFYD 455
>gi|117168277 amino acid transporter system A1 [Homo sapiens]
Length = 487
Score = 30.0 bits (66), Expect = 5.3
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 10 LLGLPTAVVYGSLALFTTILHNVFLLYYVDTFVSVYKINKMAFWVGETVFLLWNSLNDPL 69
+LGL A+ + LF +L +V LL S+Y IN + ET +++ L + +
Sbjct: 89 ILGLAFALANTGILLFLVLLTSVTLL-------SIYSINLLLICSKETGCMVYEKLGEQV 141
Query: 70 FG 71
FG
Sbjct: 142 FG 143
>gi|117168275 amino acid transporter system A1 [Homo sapiens]
Length = 487
Score = 30.0 bits (66), Expect = 5.3
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 10 LLGLPTAVVYGSLALFTTILHNVFLLYYVDTFVSVYKINKMAFWVGETVFLLWNSLNDPL 69
+LGL A+ + LF +L +V LL S+Y IN + ET +++ L + +
Sbjct: 89 ILGLAFALANTGILLFLVLLTSVTLL-------SIYSINLLLICSKETGCMVYEKLGEQV 141
Query: 70 FG 71
FG
Sbjct: 142 FG 143
>gi|157785645 SPEG complex locus [Homo sapiens]
Length = 3267
Score = 30.0 bits (66), Expect = 5.3
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 439 LITPVGSAHPWPEPPAPAPAQAPT 462
++T SA P PEPPAP P PT
Sbjct: 2902 VVTSFVSAPPAPEPPAPEPPPEPT 2925
>gi|112734870 hypothetical protein LOC57648 [Homo sapiens]
Length = 1094
Score = 30.0 bits (66), Expect = 5.3
Identities = 13/21 (61%), Positives = 14/21 (66%)
Query: 440 ITPVGSAHPWPEPPAPAPAQA 460
I P GS P P PPAPAPA +
Sbjct: 827 IQPPGSPDPPPAPPAPAPASS 847
>gi|239756083 PREDICTED: hypothetical protein [Homo sapiens]
Length = 174
Score = 29.6 bits (65), Expect = 6.9
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 442 PVGSAHPWPEPPAPAPAQAP 461
PVGS+ PWP PA P + P
Sbjct: 3 PVGSSPPWPLAPASGPGRPP 22
>gi|239750612 PREDICTED: hypothetical protein [Homo sapiens]
Length = 174
Score = 29.6 bits (65), Expect = 6.9
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 442 PVGSAHPWPEPPAPAPAQAP 461
PVGS+ PWP PA P + P
Sbjct: 3 PVGSSPPWPLAPASGPGRPP 22
>gi|239744919 PREDICTED: hypothetical protein XP_002343307 [Homo
sapiens]
Length = 174
Score = 29.6 bits (65), Expect = 6.9
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 442 PVGSAHPWPEPPAPAPAQAP 461
PVGS+ PWP PA P + P
Sbjct: 3 PVGSSPPWPLAPASGPGRPP 22
>gi|38455416 fms-related tyrosine kinase 3 ligand [Homo sapiens]
Length = 235
Score = 29.6 bits (65), Expect = 6.9
Identities = 17/40 (42%), Positives = 20/40 (50%)
Query: 442 PVGSAHPWPEPPAPAPAQAPTLRQGCFYLLVLVPITCALL 481
P S P P P P A APT Q LL+L+P+ LL
Sbjct: 160 PDSSTLPPPWSPRPLEATAPTAPQPPLLLLLLLPVGLLLL 199
>gi|52317168 olfactory receptor, family 1, subfamily S, member 2
[Homo sapiens]
Length = 325
Score = 29.6 bits (65), Expect = 6.9
Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 303 TGSILLGLSYVAPHLNNLYFLSLCRRWGVYAV-VRGLFLLKLGLSLLMLLAGPDHLSLLC 361
T ILLGLS A H N L+ L L +Y V V G L+ + +SL + L P +L L
Sbjct: 23 TEFILLGLSNQAEHQNLLFVLFL----SMYVVTVVGNGLIIVAISLDIYLHTPMYLFLAY 78
Query: 362 LFIASNRVFTEGTCKLLTLVVTD 384
L A + K+L + T+
Sbjct: 79 LSFADISSISNSVPKMLVNIQTN 101
>gi|194473724 adaptor-related protein complex 1, mu 1 subunit
isoform 1 [Homo sapiens]
Length = 435
Score = 29.3 bits (64), Expect = 9.0
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 37 YVDTFVSVYKINKM--AFWVGETVFLLWNSLNDPLFGWLSDRQFLSSQPRSGAGLSSRAV 94
++D SV + K W+G TV N L + G + R FLS P GL+ + +
Sbjct: 172 FLDVIESVNLLGKYPGVGWLGHTVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVL 231
>gi|194239645 spinster homolog 3 [Homo sapiens]
Length = 512
Score = 29.3 bits (64), Expect = 9.0
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 9/95 (9%)
Query: 6 PQAWLLGLPTAVVYGSLALFTTILH--NVFLLYYVDTFVS-VYKINKMAFWVGETVFLLW 62
P +W L A V ++ + +L+ N F++ V + V++I+ + +TVF+
Sbjct: 34 PTSWSLPPWRAYVAAAVLCYINLLNYMNWFIIAGVLLDIQEVFQISDNHAGLLQTVFVSC 93
Query: 63 NSLNDPLFGWLSDRQFLSSQPR------SGAGLSS 91
L+ P+FG+L DR + SGAGLSS
Sbjct: 94 LLLSAPVFGYLGDRHSRKATMSFGILLWSGAGLSS 128
>gi|110611910 leukocyte immunoglobulin-like receptor, subfamily A,
member 6 [Homo sapiens]
Length = 481
Score = 29.3 bits (64), Expect = 9.0
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 403 LFGMVALVTKPGQTFAPLLGTWLLCFYTGHDLFQQSLITPVGSAHP 448
++ V+L +PG T A LLC G+ F L+T G+AHP
Sbjct: 321 IYDTVSLSAQPGPTVASGENVTLLCQSRGY--FDTFLLTKEGAAHP 364
>gi|21361825 G protein-coupled receptor 137 [Homo sapiens]
Length = 417
Score = 29.3 bits (64), Expect = 9.0
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 9/73 (12%)
Query: 6 PQAWLL-GLPTAVVYGSLALFTTILHNVFLLYYVDTF-VSVYKINKMAFWVGETVF---- 59
P A L+ LP AV G A +TT+ +F Y + V +Y ++++ +TVF
Sbjct: 10 PAAGLVPALPPAVTLGLTAAYTTLYALLFFSVYAQLWLVLLYGHKRLSY---QTVFLALC 66
Query: 60 LLWNSLNDPLFGW 72
LLW +L LF +
Sbjct: 67 LLWAALRTTLFSF 79
>gi|32469509 zinc finger and BTB domain containing 12 [Homo sapiens]
Length = 459
Score = 29.3 bits (64), Expect = 9.0
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 437 QSLITPVGSAHPWPEPPAPAPAQAPTLR 464
+SL+ P + P P+PP P P P LR
Sbjct: 151 KSLLPPARTPKPAPKPPPPPPLPPPLLR 178
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.328 0.141 0.453
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,435,557
Number of Sequences: 37866
Number of extensions: 878917
Number of successful extensions: 5011
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 4993
Number of HSP's gapped (non-prelim): 33
length of query: 517
length of database: 18,247,518
effective HSP length: 107
effective length of query: 410
effective length of database: 14,195,856
effective search space: 5820300960
effective search space used: 5820300960
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.