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Search of human proteins with 4507597
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4507597 tumor necrosis factor (ligand) superfamily, member
12 precursor [Homo sapiens]
(249 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4507597 tumor necrosis factor (ligand) superfamily, member 12... 493 e-140
gi|26051250 TNFSF12-TNFSF13 protein [Homo sapiens] 329 1e-90
gi|113430055 PREDICTED: similar to cancer/testis antigen family ... 34 0.14
gi|148539870 histone deacetylase 7 isoform d [Homo sapiens] 33 0.23
gi|169234807 histone deacetylase 7 isoform a [Homo sapiens] 33 0.23
gi|4507593 tumor necrosis factor (ligand) superfamily, member 10... 32 0.52
gi|4557433 CD40 ligand [Homo sapiens] 31 0.88
gi|121949802 cancer/testis antigen family 47, member A1 [Homo sa... 31 1.2
gi|121949798 cancer/testis antigen family 47, member A2 [Homo sa... 31 1.2
gi|121949773 cancer/testis antigen family 47, member A3 [Homo sa... 31 1.2
gi|121949771 cancer/testis antigen family 47, member A4 [Homo sa... 31 1.2
gi|121949796 cancer/testis antigen family 47, member A5 [Homo sa... 31 1.2
gi|121949794 cancer/testis antigen family 47, member A6 [Homo sa... 31 1.2
gi|121949792 cancer/testis antigen family 47, member A7 [Homo sa... 31 1.2
gi|121949790 cancer/testis antigen family 47, member A8 [Homo sa... 31 1.2
gi|121949788 cancer/testis antigen family 47, member A9 [Homo sa... 31 1.2
gi|121949786 cancer/testis antigen family 47, member A10 [Homo s... 31 1.2
gi|122114660 cancer/testis antigen family 47, member A11 [Homo s... 31 1.2
gi|51317366 myosin XVIIIB [Homo sapiens] 31 1.2
gi|170650685 zinc finger and BTB domain containing 37 isoform a ... 30 1.5
gi|14210530 zinc finger and BTB domain containing 37 isoform b [... 30 1.5
gi|209977046 fibrous sheath CABYR binding protein [Homo sapiens] 30 2.0
gi|13569938 sialyltransferase 7E [Homo sapiens] 30 2.6
gi|13899295 membrane-spanning 4-domains, subfamily A, member 8B ... 30 2.6
gi|7662354 MON1 homolog B [Homo sapiens] 30 2.6
gi|54112401 calmodulin-binding transcription activator 1 [Homo s... 29 3.3
gi|4507609 tumor necrosis factor (ligand) superfamily, member 9 ... 29 3.3
gi|208022698 retinoblastoma protein-binding zinc finger protein ... 29 3.3
gi|157384973 tenascin R [Homo sapiens] 29 3.3
gi|157743257 POU domain, class 6, transcription factor 2 [Homo s... 29 3.3
>gi|4507597 tumor necrosis factor (ligand) superfamily, member 12
precursor [Homo sapiens]
Length = 249
Score = 493 bits (1268), Expect = e-140
Identities = 249/249 (100%), Positives = 249/249 (100%)
Query: 1 MAARRSQRRRGRRGEPGTALLVPLALGLGLALACLGLLLAVVSLGSRASLSAQEPAQEEL 60
MAARRSQRRRGRRGEPGTALLVPLALGLGLALACLGLLLAVVSLGSRASLSAQEPAQEEL
Sbjct: 1 MAARRSQRRRGRRGEPGTALLVPLALGLGLALACLGLLLAVVSLGSRASLSAQEPAQEEL 60
Query: 61 VAEEDQDPSELNPQTEESQDPAPFLNRLVRPRRSAPKGRKTRARRAIAAHYEVHPRPGQD 120
VAEEDQDPSELNPQTEESQDPAPFLNRLVRPRRSAPKGRKTRARRAIAAHYEVHPRPGQD
Sbjct: 61 VAEEDQDPSELNPQTEESQDPAPFLNRLVRPRRSAPKGRKTRARRAIAAHYEVHPRPGQD 120
Query: 121 GAQAGVDGTVSGWEEARINSSSPLRYNRQIGEFIVTRAGLYYLYCQVHFDEGKAVYLKLD 180
GAQAGVDGTVSGWEEARINSSSPLRYNRQIGEFIVTRAGLYYLYCQVHFDEGKAVYLKLD
Sbjct: 121 GAQAGVDGTVSGWEEARINSSSPLRYNRQIGEFIVTRAGLYYLYCQVHFDEGKAVYLKLD 180
Query: 181 LLVDGVLALRCLEEFSATAASSLGPQLRLCQVSGLLALRPGSSLRIRTLPWAHLKAAPFL 240
LLVDGVLALRCLEEFSATAASSLGPQLRLCQVSGLLALRPGSSLRIRTLPWAHLKAAPFL
Sbjct: 181 LLVDGVLALRCLEEFSATAASSLGPQLRLCQVSGLLALRPGSSLRIRTLPWAHLKAAPFL 240
Query: 241 TYFGLFQVH 249
TYFGLFQVH
Sbjct: 241 TYFGLFQVH 249
>gi|26051250 TNFSF12-TNFSF13 protein [Homo sapiens]
Length = 330
Score = 329 bits (844), Expect = 1e-90
Identities = 166/166 (100%), Positives = 166/166 (100%)
Query: 1 MAARRSQRRRGRRGEPGTALLVPLALGLGLALACLGLLLAVVSLGSRASLSAQEPAQEEL 60
MAARRSQRRRGRRGEPGTALLVPLALGLGLALACLGLLLAVVSLGSRASLSAQEPAQEEL
Sbjct: 1 MAARRSQRRRGRRGEPGTALLVPLALGLGLALACLGLLLAVVSLGSRASLSAQEPAQEEL 60
Query: 61 VAEEDQDPSELNPQTEESQDPAPFLNRLVRPRRSAPKGRKTRARRAIAAHYEVHPRPGQD 120
VAEEDQDPSELNPQTEESQDPAPFLNRLVRPRRSAPKGRKTRARRAIAAHYEVHPRPGQD
Sbjct: 61 VAEEDQDPSELNPQTEESQDPAPFLNRLVRPRRSAPKGRKTRARRAIAAHYEVHPRPGQD 120
Query: 121 GAQAGVDGTVSGWEEARINSSSPLRYNRQIGEFIVTRAGLYYLYCQ 166
GAQAGVDGTVSGWEEARINSSSPLRYNRQIGEFIVTRAGLYYLYCQ
Sbjct: 121 GAQAGVDGTVSGWEEARINSSSPLRYNRQIGEFIVTRAGLYYLYCQ 166
>gi|113430055 PREDICTED: similar to cancer/testis antigen family
147, member B1 isoform 1 [Homo sapiens]
Length = 284
Score = 33.9 bits (76), Expect = 0.14
Identities = 33/107 (30%), Positives = 41/107 (38%), Gaps = 16/107 (14%)
Query: 1 MAARRSQRRRGRRGEPGTA----LLVPLALGLGLALA---CLGLLLAVV---------SL 44
M R RRR G+ LLV LG+G A LGLL L
Sbjct: 137 MRGGRLMRRRRTAAPSGSEEPRLLLVHERLGVGAAGPEGEGLGLLQEAALVPEPEVPADL 196
Query: 45 GSRASLSAQEPAQEELVAEEDQDPSELNPQTEESQDPAPFLNRLVRP 91
A A+EPA+EEL E ++P++ P EE P P
Sbjct: 197 AEMAREPAEEPAEEELAEEAAEEPAKEEPAAEEESAEEPATEEAAAP 243
>gi|148539870 histone deacetylase 7 isoform d [Homo sapiens]
Length = 954
Score = 33.1 bits (74), Expect = 0.23
Identities = 27/71 (38%), Positives = 34/71 (47%), Gaps = 7/71 (9%)
Query: 7 QRRRGR--RGEPGTALLVPLALGLGLALACLGLLLAVVSLGSRASLSAQEPAQEELVAEE 64
QR GR RG G +L+PLA G L+ A S + ASLSA EPA + V
Sbjct: 456 QRLAGRLPRGSTGDTVLLPLAQGGHRPLS-----RAQSSPAAPASLSAPEPASQARVLSS 510
Query: 65 DQDPSELNPQT 75
+ P+ P T
Sbjct: 511 SETPARTLPFT 521
>gi|169234807 histone deacetylase 7 isoform a [Homo sapiens]
Length = 991
Score = 33.1 bits (74), Expect = 0.23
Identities = 27/71 (38%), Positives = 34/71 (47%), Gaps = 7/71 (9%)
Query: 7 QRRRGR--RGEPGTALLVPLALGLGLALACLGLLLAVVSLGSRASLSAQEPAQEELVAEE 64
QR GR RG G +L+PLA G L+ A S + ASLSA EPA + V
Sbjct: 493 QRLAGRLPRGSTGDTVLLPLAQGGHRPLS-----RAQSSPAAPASLSAPEPASQARVLSS 547
Query: 65 DQDPSELNPQT 75
+ P+ P T
Sbjct: 548 SETPARTLPFT 558
>gi|4507593 tumor necrosis factor (ligand) superfamily, member 10
[Homo sapiens]
Length = 281
Score = 32.0 bits (71), Expect = 0.52
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 130 VSGWEEARINSSSPLRYNRQIGEFIVTRAGLYYLYCQVHF 169
++ WE +R S + + GE ++ G YY+Y Q +F
Sbjct: 151 INSWESSRSGHSFLSNLHLRNGELVIHEKGFYYIYSQTYF 190
>gi|4557433 CD40 ligand [Homo sapiens]
Length = 261
Score = 31.2 bits (69), Expect = 0.88
Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 5/102 (4%)
Query: 152 EFIVTRAGLYYLYCQVHFDEGKAVYLKLDLLVDGVLAL-----RCLEEFSATAASSLGPQ 206
+ V R GLYY+Y QV F + + + L R L + T +S+
Sbjct: 160 QLTVKRQGLYYIYAQVTFCSNREASSQAPFIASLCLKSPGRFERILLRAANTHSSAKPCG 219
Query: 207 LRLCQVSGLLALRPGSSLRIRTLPWAHLKAAPFLTYFGLFQV 248
+ + G+ L+PG+S+ + + + T FGL ++
Sbjct: 220 QQSIHLGGVFELQPGASVFVNVTDPSQVSHGTGFTSFGLLKL 261
>gi|121949802 cancer/testis antigen family 47, member A1 [Homo
sapiens]
Length = 288
Score = 30.8 bits (68), Expect = 1.2
Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 12/70 (17%)
Query: 20 LLVPLALGLGLALAC---LGLLLAVVS---------LGSRASLSAQEPAQEELVAEEDQD 67
LL+P LG G A LGL+ S L A A+E A+E+L E ++
Sbjct: 168 LLLPQRLGAGAAARAGEGLGLIQEAASVPEPAVPADLAEMAREPAEEAAEEKLSEEATEE 227
Query: 68 PSELNPQTEE 77
P P TEE
Sbjct: 228 PDAEEPATEE 237
>gi|121949798 cancer/testis antigen family 47, member A2 [Homo
sapiens]
Length = 288
Score = 30.8 bits (68), Expect = 1.2
Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 12/70 (17%)
Query: 20 LLVPLALGLGLALAC---LGLLLAVVS---------LGSRASLSAQEPAQEELVAEEDQD 67
LL+P LG G A LGL+ S L A A+E A+E+L E ++
Sbjct: 168 LLLPQRLGAGAAARAGEGLGLIQEAASVPEPAVPADLAEMAREPAEEAAEEKLSEEATEE 227
Query: 68 PSELNPQTEE 77
P P TEE
Sbjct: 228 PDAEEPATEE 237
>gi|121949773 cancer/testis antigen family 47, member A3 [Homo
sapiens]
Length = 288
Score = 30.8 bits (68), Expect = 1.2
Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 12/70 (17%)
Query: 20 LLVPLALGLGLALAC---LGLLLAVVS---------LGSRASLSAQEPAQEELVAEEDQD 67
LL+P LG G A LGL+ S L A A+E A+E+L E ++
Sbjct: 168 LLLPQRLGAGAAARAGEGLGLIQEAASVPEPAVPADLAEMAREPAEEAAEEKLSEEATEE 227
Query: 68 PSELNPQTEE 77
P P TEE
Sbjct: 228 PDAEEPATEE 237
>gi|121949771 cancer/testis antigen family 47, member A4 [Homo
sapiens]
Length = 288
Score = 30.8 bits (68), Expect = 1.2
Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 12/70 (17%)
Query: 20 LLVPLALGLGLALAC---LGLLLAVVS---------LGSRASLSAQEPAQEELVAEEDQD 67
LL+P LG G A LGL+ S L A A+E A+E+L E ++
Sbjct: 168 LLLPQRLGAGAAARAGEGLGLIQEAASVPEPAVPADLAEMAREPAEEAAEEKLSEEATEE 227
Query: 68 PSELNPQTEE 77
P P TEE
Sbjct: 228 PDAEEPATEE 237
>gi|121949796 cancer/testis antigen family 47, member A5 [Homo
sapiens]
Length = 288
Score = 30.8 bits (68), Expect = 1.2
Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 12/70 (17%)
Query: 20 LLVPLALGLGLALAC---LGLLLAVVS---------LGSRASLSAQEPAQEELVAEEDQD 67
LL+P LG G A LGL+ S L A A+E A+E+L E ++
Sbjct: 168 LLLPQRLGAGAAARAGEGLGLIQEAASVPEPAVPADLAEMAREPAEEAAEEKLSEEATEE 227
Query: 68 PSELNPQTEE 77
P P TEE
Sbjct: 228 PDAEEPATEE 237
>gi|121949794 cancer/testis antigen family 47, member A6 [Homo
sapiens]
Length = 288
Score = 30.8 bits (68), Expect = 1.2
Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 12/70 (17%)
Query: 20 LLVPLALGLGLALAC---LGLLLAVVS---------LGSRASLSAQEPAQEELVAEEDQD 67
LL+P LG G A LGL+ S L A A+E A+E+L E ++
Sbjct: 168 LLLPQRLGAGAAARAGEGLGLIQEAASVPEPAVPADLAEMAREPAEEAAEEKLSEEATEE 227
Query: 68 PSELNPQTEE 77
P P TEE
Sbjct: 228 PDAEEPATEE 237
>gi|121949792 cancer/testis antigen family 47, member A7 [Homo
sapiens]
Length = 288
Score = 30.8 bits (68), Expect = 1.2
Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 12/70 (17%)
Query: 20 LLVPLALGLGLALAC---LGLLLAVVS---------LGSRASLSAQEPAQEELVAEEDQD 67
LL+P LG G A LGL+ S L A A+E A+E+L E ++
Sbjct: 168 LLLPQRLGAGAAARAGEGLGLIQEAASVPEPAVPADLAEMAREPAEEAAEEKLSEEATEE 227
Query: 68 PSELNPQTEE 77
P P TEE
Sbjct: 228 PDAEEPATEE 237
>gi|121949790 cancer/testis antigen family 47, member A8 [Homo
sapiens]
Length = 288
Score = 30.8 bits (68), Expect = 1.2
Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 12/70 (17%)
Query: 20 LLVPLALGLGLALAC---LGLLLAVVS---------LGSRASLSAQEPAQEELVAEEDQD 67
LL+P LG G A LGL+ S L A A+E A+E+L E ++
Sbjct: 168 LLLPQRLGAGAAARAGEGLGLIQEAASVPEPAVPADLAEMAREPAEEAAEEKLSEEATEE 227
Query: 68 PSELNPQTEE 77
P P TEE
Sbjct: 228 PDAEEPATEE 237
>gi|121949788 cancer/testis antigen family 47, member A9 [Homo
sapiens]
Length = 288
Score = 30.8 bits (68), Expect = 1.2
Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 12/70 (17%)
Query: 20 LLVPLALGLGLALAC---LGLLLAVVS---------LGSRASLSAQEPAQEELVAEEDQD 67
LL+P LG G A LGL+ S L A A+E A+E+L E ++
Sbjct: 168 LLLPQRLGAGAAARAGEGLGLIQEAASVPEPAVPADLAEMAREPAEEAAEEKLSEEATEE 227
Query: 68 PSELNPQTEE 77
P P TEE
Sbjct: 228 PDAEEPATEE 237
>gi|121949786 cancer/testis antigen family 47, member A10 [Homo
sapiens]
Length = 288
Score = 30.8 bits (68), Expect = 1.2
Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 12/70 (17%)
Query: 20 LLVPLALGLGLALAC---LGLLLAVVS---------LGSRASLSAQEPAQEELVAEEDQD 67
LL+P LG G A LGL+ S L A A+E A+E+L E ++
Sbjct: 168 LLLPQRLGAGAAARAGEGLGLIQEAASVPEPAVPADLAEMAREPAEEAAEEKLSEEATEE 227
Query: 68 PSELNPQTEE 77
P P TEE
Sbjct: 228 PDAEEPATEE 237
>gi|122114660 cancer/testis antigen family 47, member A11 [Homo
sapiens]
Length = 288
Score = 30.8 bits (68), Expect = 1.2
Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 12/70 (17%)
Query: 20 LLVPLALGLGLALAC---LGLLLAVVS---------LGSRASLSAQEPAQEELVAEEDQD 67
LL+P LG G A LGL+ S L A A+E A+E+L E ++
Sbjct: 168 LLLPQRLGAGAAARAGEGLGLIQEAASVPEPAVPADLAEMAREPAEEAAEEKLSEEATEE 227
Query: 68 PSELNPQTEE 77
P P TEE
Sbjct: 228 PDAEEPATEE 237
>gi|51317366 myosin XVIIIB [Homo sapiens]
Length = 2567
Score = 30.8 bits (68), Expect = 1.2
Identities = 17/61 (27%), Positives = 31/61 (50%)
Query: 49 SLSAQEPAQEELVAEEDQDPSELNPQTEESQDPAPFLNRLVRPRRSAPKGRKTRARRAIA 108
++S++ E+ + EED+ P +P S P F+ +LVR K + R + A+A
Sbjct: 2 AISSRLALWEQKIREEDKSPPPSSPPPLFSVIPGGFIKQLVRGTEKEAKEARQRKQLAVA 61
Query: 109 A 109
+
Sbjct: 62 S 62
>gi|170650685 zinc finger and BTB domain containing 37 isoform a
[Homo sapiens]
Length = 503
Score = 30.4 bits (67), Expect = 1.5
Identities = 18/57 (31%), Positives = 27/57 (47%)
Query: 59 ELVAEEDQDPSELNPQTEESQDPAPFLNRLVRPRRSAPKGRKTRARRAIAAHYEVHP 115
E+ AE Q ++ + ES P LNR + PR + PKG + A+ E+ P
Sbjct: 133 EVEAELSQTRTKHQERPPESHRVTPNLNRSLSPRHNTPKGNRRGQVSAVLDIRELSP 189
>gi|14210530 zinc finger and BTB domain containing 37 isoform b
[Homo sapiens]
Length = 361
Score = 30.4 bits (67), Expect = 1.5
Identities = 18/57 (31%), Positives = 27/57 (47%)
Query: 59 ELVAEEDQDPSELNPQTEESQDPAPFLNRLVRPRRSAPKGRKTRARRAIAAHYEVHP 115
E+ AE Q ++ + ES P LNR + PR + PKG + A+ E+ P
Sbjct: 133 EVEAELSQTRTKHQERPPESHRVTPNLNRSLSPRHNTPKGNRRGQVSAVLDIRELSP 189
>gi|209977046 fibrous sheath CABYR binding protein [Homo sapiens]
Length = 825
Score = 30.0 bits (66), Expect = 2.0
Identities = 26/90 (28%), Positives = 35/90 (38%), Gaps = 1/90 (1%)
Query: 31 ALACLGLLLAVVSLGSRASLSAQEPAQEELVAEEDQDPSELNPQTEESQDPAPFLNRLVR 90
A A + LL A + A Q P EE AE P+E P E PA V+
Sbjct: 589 ASAAIQLLAATEASAEEAPAEVQPPPAEEAPAEVQPPPAEEAP-AEVQPPPAEEAPAEVQ 647
Query: 91 PRRSAPKGRKTRARRAIAAHYEVHPRPGQD 120
P + + + A A EV P P ++
Sbjct: 648 PPPAEEAPAEVQPPPAEEAPAEVQPPPAEE 677
Score = 29.3 bits (64), Expect = 3.3
Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Query: 48 ASLSAQEPAQEELVAEEDQDPSELNPQTEESQDPAPFLNRLVRPRRSAPKGRKTRARRAI 107
A L Q P+ EE AEE +L TE S + AP V+P + + + A
Sbjct: 572 APLELQPPSGEETTAEEASAAIQLLAATEASAEEAP---AEVQPPPAEEAPAEVQPPPAE 628
Query: 108 AAHYEVHPRPGQD 120
A EV P P ++
Sbjct: 629 EAPAEVQPPPAEE 641
>gi|13569938 sialyltransferase 7E [Homo sapiens]
Length = 336
Score = 29.6 bits (65), Expect = 2.6
Identities = 19/68 (27%), Positives = 27/68 (39%)
Query: 24 LALGLGLALACLGLLLAVVSLGSRASLSAQEPAQEELVAEEDQDPSELNPQTEESQDPAP 83
LA+ L L C LLL SLG + Q+ Q++ ++ P E S P
Sbjct: 9 LAVCLALTTMCTSLLLVYSSLGGQKERPPQQQQQQQQQQQQASATGSSQPAAESSTQQRP 68
Query: 84 FLNRLVRP 91
+ RP
Sbjct: 69 GVPAGPRP 76
>gi|13899295 membrane-spanning 4-domains, subfamily A, member 8B
[Homo sapiens]
Length = 250
Score = 29.6 bits (65), Expect = 2.6
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 181 LLVDGVLALRCLEEFS-ATAASSLGPQLRLCQVSGLLALRP 220
+ + GVL + CL EF A A+S G QL CQ S + + P
Sbjct: 182 MAISGVLLVFCLLEFGIACASSHFGCQLVCCQSSNVSVIYP 222
>gi|7662354 MON1 homolog B [Homo sapiens]
Length = 547
Score = 29.6 bits (65), Expect = 2.6
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 15/69 (21%)
Query: 15 EPGTALL-----VPLALGLGLALACL-------GLLLAVVSLGSRASLSAQEPAQEELVA 62
+PG LL VPLA L AL L GL L+V+++G R +AQE ++A
Sbjct: 239 DPGALLLGAVRCVPLARPLRDALGALLRRCTAPGLALSVLAVGGRLITAAQE---RNVLA 295
Query: 63 EEDQDPSEL 71
E DP++L
Sbjct: 296 ECRLDPADL 304
>gi|54112401 calmodulin-binding transcription activator 1 [Homo
sapiens]
Length = 1673
Score = 29.3 bits (64), Expect = 3.3
Identities = 28/73 (38%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Query: 16 PGTALLVPLAL-GLGLALACLGLLLAVVSLGSRASLSAQEP-AQEELVAEEDQDPSELNP 73
P LL P A GL LA++ G A + GS SLS EELV D P
Sbjct: 418 PNHHLLSPDASQGLVLAVSSDGHKFAFPTTGSSESLSMLPTNVSEELVLSTTLDGGRKIP 477
Query: 74 QTEESQDPAPFLN 86
+T + DP FLN
Sbjct: 478 ETTMNFDPDCFLN 490
>gi|4507609 tumor necrosis factor (ligand) superfamily, member 9
[Homo sapiens]
Length = 254
Score = 29.3 bits (64), Expect = 3.3
Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 126 VDGTVSGWEE---ARINSSSPLRYNRQIGEFIVTRAGLYYLYCQV 167
+DG +S + + A ++ + L Y E +V +AG+YY++ Q+
Sbjct: 103 IDGPLSWYSDPGLAGVSLTGGLSYKEDTKELVVAKAGVYYVFFQL 147
>gi|208022698 retinoblastoma protein-binding zinc finger protein
isoform d [Homo sapiens]
Length = 226
Score = 29.3 bits (64), Expect = 3.3
Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 9/69 (13%)
Query: 55 PAQEELVAEEDQDPSELNPQTEESQDPAPFLNRLVRPRRSAPKGRKTRAR--RAIAAHYE 112
P +E LV +D E+ EE + A R +RS+PK RK A R A H
Sbjct: 132 PGEELLVWYNGEDNPEIAAAIEEERASA-------RSKRSSPKSRKATASAWRPDALHQR 184
Query: 113 VHPRPGQDG 121
PG G
Sbjct: 185 PRTSPGSIG 193
>gi|157384973 tenascin R [Homo sapiens]
Length = 1358
Score = 29.3 bits (64), Expect = 3.3
Identities = 15/66 (22%), Positives = 32/66 (48%)
Query: 51 SAQEPAQEELVAEEDQDPSELNPQTEESQDPAPFLNRLVRPRRSAPKGRKTRARRAIAAH 110
S E + E+ V+ ED+ +E QT + + F +R+ P+++ P + + + +
Sbjct: 81 SGLEASAEQEVSAEDETLAEYMGQTSDHESQVTFTHRINFPKKACPCASSAQVLQELLSR 140
Query: 111 YEVHPR 116
E+ R
Sbjct: 141 IEMLER 146
>gi|157743257 POU domain, class 6, transcription factor 2 [Homo
sapiens]
Length = 691
Score = 29.3 bits (64), Expect = 3.3
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
Query: 14 GEPGTALLVPLA-----LGLGLALACLGLL-LAVVSLGSRASLSAQ-EPAQEELVAEEDQ 66
G+ G L +P A GL A A G++ L + +L + +SL++Q + Q +L ++ Q
Sbjct: 133 GQQGLVLTLPTANLTNIQGLVAAAAAGGIMTLPLQNLQATSSLNSQLQQLQLQLQQQQQQ 192
Query: 67 DPSELNPQTEESQDPAP 83
+ P T + PAP
Sbjct: 193 QQQQPPPSTNQHPQPAP 209
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.136 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,798,567
Number of Sequences: 37866
Number of extensions: 455345
Number of successful extensions: 2381
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 51
Number of HSP's that attempted gapping in prelim test: 2319
Number of HSP's gapped (non-prelim): 115
length of query: 249
length of database: 18,247,518
effective HSP length: 100
effective length of query: 149
effective length of database: 14,460,918
effective search space: 2154676782
effective search space used: 2154676782
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.