Guide to the Human Genome
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Name: TIMP1 Sequence: fasta or formatted (207aa) NCBI GI: 4507509
Description:

tissue inhibitor of metalloproteinase 1 precursor

Referenced in:

Protease Inhibitors
Synapses

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.2         15           2
 C cysteine            5.8         12           1
 D aspartate           2.4          5           1
 E glutamate           4.8         10           2
 F phenylalanine       5.3         11           1
 G glycine             6.3         13           1
 H histidine           2.9          6           1
 I isoleucine          4.3          9           1
 K lysine              3.9          8           1
 L leucine            11.6         24           4
 M methionine          1.9          4           1
 N asparagine          1.9          4           1
 P proline             6.3         13           2
 Q glutamine           5.8         12           1
 R arginine            5.3         11           2
 S serine              7.2         15           1
 T threonine           7.7         16           2
 V valine              4.3          9           1
 W tryptophan          1.9          4           1
 Y tyrosine            2.9          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tissue inhibitor of metalloproteinase 1 precursor [Ho... 
TIMP2                 0.325   TIMP metallopeptidase inhibitor 2 precursor 
TIMP3                 0.301   tissue inhibitor of metalloproteinase 3 precursor [Ho...
TIMP4                 0.279   tissue inhibitor of metalloproteinase 4 precursor [Ho...
PLXNA2                0.015   plexin A2 
MPN2                  0.012   marapsin 2 
P4HA2                 0.010   prolyl 4-hydroxylase, alpha II subunit isoform 1 pr...
P4HA2                 0.010   prolyl 4-hydroxylase, alpha II subunit isoform 2 pr...
P4HA2                 0.010   prolyl 4-hydroxylase, alpha II subunit isoform 2 pre...
P4HA2                 0.010   prolyl 4-hydroxylase, alpha II subunit isoform 2 pre...
P4HA2                 0.010   prolyl 4-hydroxylase, alpha II subunit isoform 1 prec...
SLC4A4                0.010   solute carrier family 4, sodium bicarbonate cotrans...
SLC4A4                0.010   solute carrier family 4, sodium bicarbonate cotranspo...
SLC4A4                0.010   solute carrier family 4, sodium bicarbonate cotrans...
CRB2                  0.007   crumbs homolog 2 
LOC100292628          0.005   PREDICTED: hypothetical protein 
ADAMDEC1              0.005   ADAM-like, decysin 1 isoform 1 
ADAMDEC1              0.005   ADAM-like, decysin 1 isoform 2 
ADAMDEC1              0.005   ADAM-like, decysin 1 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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