Guide to the Human Genome
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Name: TIMP3 Sequence: fasta or formatted (211aa) NCBI GI: 4507513
Description:

tissue inhibitor of metalloproteinase 3 precursor

Referenced in:

Protease Inhibitors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.8          8           1
 C cysteine            5.7         12           1
 D aspartate           3.8          8           1
 E glutamate           3.3          7           1
 F phenylalanine       2.8          6           1
 G glycine             9.0         19           2
 H histidine           2.4          5           1
 I isoleucine          4.3          9           2
 K lysine              8.1         17           2
 L leucine             9.5         20           2
 M methionine          2.8          6           1
 N asparagine          3.8          8           1
 P proline             4.7         10           2
 Q glutamine           3.8          8           1
 R arginine            3.8          8           1
 S serine              6.6         14           1
 T threonine           5.7         12           1
 V valine              5.2         11           2
 W tryptophan          3.3          7           1
 Y tyrosine            7.6         16           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tissue inhibitor of metalloproteinase 3 precursor [Ho... 
TIMP4                 0.413   tissue inhibitor of metalloproteinase 4 precursor [Ho...
TIMP2                 0.393   TIMP metallopeptidase inhibitor 2 precursor 
TIMP1                 0.283   tissue inhibitor of metalloproteinase 1 precursor [Ho...
MYO1H                 0.027   myosin 1H 
VWDE                  0.014   von Willebrand factor D and EGF domains 
FUT6                  0.009   fucosyltransferase 6 
FUT6                  0.009   fucosyltransferase 6 
ZFP14                 0.009   zinc finger protein 14-like 
TDRD3                 0.007   tudor domain containing 3 isoform 1 
LAMB4                 0.005   laminin, beta 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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