Guide to the Human Genome
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Name: ZNF260 Sequence: fasta or formatted (412aa) NCBI GI: 61676193
Description:

zinc finger protein 260

Referenced in:

Kruppel-related Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.4         14           1
 C cysteine            7.0         29           1
 D aspartate           0.7          3           1
 E glutamate           8.5         35           1
 F phenylalanine       3.9         16           1
 G glycine             7.5         31           1
 H histidine           9.0         37           2
 I isoleucine          5.8         24           2
 K lysine             13.1         54           2
 L leucine             4.9         20           2
 M methionine          1.5          6           1
 N asparagine          3.4         14           1
 P proline             3.2         13           1
 Q glutamine           5.6         23           1
 R arginine            3.6         15           1
 S serine              7.3         30           3
 T threonine           6.3         26           1
 V valine              1.9          8           1
 W tryptophan          0.0          0           0
 Y tyrosine            3.4         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger protein 260 
ZNF569                0.647   zinc finger protein 569 
ZNF568                0.605   zinc finger protein 568 
ZNF135                0.591   zinc finger protein 135 
ZNF420                0.588   zinc finger protein 420 
LOC100287429          0.586   PREDICTED: hypothetical protein XP_002343926 isofor...
LOC100287429          0.586   PREDICTED: hypothetical protein XP_002343925 isofor...
LOC100287429          0.586   PREDICTED: hypothetical protein XP_002343927 isofor...
ZNF84                 0.586   zinc finger protein 84 
ZNF84                 0.586   zinc finger protein 84 
ZNF665                0.585   zinc finger protein 665 
ZNF146                0.581   zinc finger protein 146 
ZNF146                0.581   zinc finger protein 146 
ZNF146                0.581   zinc finger protein 146 
ZNF470                0.577   zinc finger protein 470 
ZNF182                0.575   zinc finger protein 21 isoform 2 
ZNF182                0.575   zinc finger protein 21 isoform 1 
ZNF347                0.573   zinc finger protein 347 
ZNF184                0.572   zinc finger protein 184 
ZNF33B                0.572   zinc finger protein 33B 
ZNF160                0.571   zinc finger protein 160 
ZNF160                0.571   zinc finger protein 160 
ZNF160                0.571   zinc finger protein 160 
ZNF484                0.570   zinc finger protein 484 isoform b 
ZNF484                0.570   zinc finger protein 484 isoform a 
ZNF658                0.565   zinc finger protein 658 
ZNF33A                0.564   zinc finger protein 33A isoform b 
ZNF33A                0.564   zinc finger protein 33A isoform a 
ZNF678                0.562   zinc finger protein 678 
ZNF23                 0.559   zinc finger protein 23 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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