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Search of human proteins with 4507451
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4507451 trefoil factor 1 precursor [Homo sapiens]
(84 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4507451 trefoil factor 1 precursor [Homo sapiens] 184 2e-47
gi|4885629 trefoil factor 2 precursor [Homo sapiens] 74 2e-14
gi|48928027 trefoil factor 3 precursor [Homo sapiens] 72 1e-13
gi|119393895 acid alpha-glucosidase preproprotein [Homo sapiens] 39 0.001
gi|119393893 acid alpha-glucosidase preproprotein [Homo sapiens] 39 0.001
gi|119393891 acid alpha-glucosidase preproprotein [Homo sapiens] 39 0.001
gi|221316699 maltase-glucoamylase [Homo sapiens] 31 0.24
gi|10863987 zona pellucida glycoprotein 4 preproprotein [Homo sa... 30 0.32
gi|66348148 zona pellucida glycoprotein 1 [Homo sapiens] 30 0.32
gi|157364974 sucrase-isomaltase [Homo sapiens] 29 0.70
gi|157909822 pragmin [Homo sapiens] 29 0.92
gi|30089980 chordin [Homo sapiens] 28 2.0
gi|110347463 human immunodeficiency virus type I enhancer bindin... 27 4.5
gi|183979980 chemokine (C-C motif) receptor 2 isoform A [Homo sa... 26 5.9
gi|74048554 cancer susceptibility candidate 5 isoform 2 [Homo sa... 26 5.9
gi|74048514 cancer susceptibility candidate 5 isoform 1 [Homo sa... 26 5.9
gi|239755545 PREDICTED: otogelin isoform 1 [Homo sapiens] 26 5.9
gi|239755543 PREDICTED: otogelin isoform 2 [Homo sapiens] 26 5.9
gi|239749989 PREDICTED: otogelin isoform 2 [Homo sapiens] 26 5.9
gi|239749987 PREDICTED: otogelin isoform 1 [Homo sapiens] 26 5.9
gi|239744300 PREDICTED: otogelin isoform 2 [Homo sapiens] 26 5.9
gi|239744298 PREDICTED: otogelin isoform 1 [Homo sapiens] 26 5.9
gi|21717816 solute carrier family 15, member 4 [Homo sapiens] 26 7.8
>gi|4507451 trefoil factor 1 precursor [Homo sapiens]
Length = 84
Score = 184 bits (466), Expect = 2e-47
Identities = 84/84 (100%), Positives = 84/84 (100%)
Query: 1 MATMENKVICALVLVSMLALGTLAEAQTETCTVAPRERQNCGFPGVTPSQCANKGCCFDD 60
MATMENKVICALVLVSMLALGTLAEAQTETCTVAPRERQNCGFPGVTPSQCANKGCCFDD
Sbjct: 1 MATMENKVICALVLVSMLALGTLAEAQTETCTVAPRERQNCGFPGVTPSQCANKGCCFDD 60
Query: 61 TVRGVPWCFYPNTIDVPPEEECEF 84
TVRGVPWCFYPNTIDVPPEEECEF
Sbjct: 61 TVRGVPWCFYPNTIDVPPEEECEF 84
>gi|4885629 trefoil factor 2 precursor [Homo sapiens]
Length = 129
Score = 73.9 bits (180), Expect = 2e-14
Identities = 30/72 (41%), Positives = 47/72 (65%), Gaps = 1/72 (1%)
Query: 1 MATMENKVICALVLVSMLAL-GTLAEAQTETCTVAPRERQNCGFPGVTPSQCANKGCCFD 59
M + +++ AL+++ + AL G+ + + ++P R NCGFPG+T QC + GCCFD
Sbjct: 1 MGRRDAQLLAALLVLGLCALAGSEKPSPCQCSRLSPHNRTNCGFPGITSDQCFDNGCCFD 60
Query: 60 DTVRGVPWCFYP 71
+V GVPWCF+P
Sbjct: 61 SSVTGVPWCFHP 72
Score = 66.2 bits (160), Expect = 5e-12
Identities = 22/62 (35%), Positives = 42/62 (67%), Gaps = 5/62 (8%)
Query: 23 LAEAQTETCTVAPRERQNCGFPGVTPSQCANKGCCFDDTVRGVPWCFYPNTIDVPPEEEC 82
L + +++ C + +R+NCG+PG++P +CA++ CCF + + VPWCF+P ++ E+C
Sbjct: 73 LPKQESDQCVMEVSDRRNCGYPGISPEECASRKCCFSNFIFEVPWCFFPKSV-----EDC 127
Query: 83 EF 84
+
Sbjct: 128 HY 129
>gi|48928027 trefoil factor 3 precursor [Homo sapiens]
Length = 130
Score = 71.6 bits (174), Expect = 1e-13
Identities = 35/85 (41%), Positives = 45/85 (52%), Gaps = 9/85 (10%)
Query: 4 MENKVICALVLVSMLALGTLAEA----QTETCTVAPRERQNCGFPGVTPSQCANKGCCFD 59
M + +C L LV L + AE C V ++R +CG+P VTP +C N+GCCFD
Sbjct: 51 MAARALCMLGLVLALLSSSSAEEYVGLSANQCAVPAKDRVDCGYPHVTPKECNNRGCCFD 110
Query: 60 DTVRGVPWCFYPNTIDVPPEEECEF 84
+ GVPWCF P E EC F
Sbjct: 111 SRIPGVPWCFKP-----LQEAECTF 130
>gi|119393895 acid alpha-glucosidase preproprotein [Homo sapiens]
Length = 952
Score = 38.5 bits (88), Expect = 0.001
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 8/49 (16%)
Query: 31 CTVAPRERQNCG-FPGVTPSQCANKGCCFDDTVRGV-------PWCFYP 71
C V P R +C +T QC +GCC+ +G+ PWCF+P
Sbjct: 82 CDVPPNSRFDCAPDKAITQEQCEARGCCYIPAKQGLQGAQMGQPWCFFP 130
>gi|119393893 acid alpha-glucosidase preproprotein [Homo sapiens]
Length = 952
Score = 38.5 bits (88), Expect = 0.001
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 8/49 (16%)
Query: 31 CTVAPRERQNCG-FPGVTPSQCANKGCCFDDTVRGV-------PWCFYP 71
C V P R +C +T QC +GCC+ +G+ PWCF+P
Sbjct: 82 CDVPPNSRFDCAPDKAITQEQCEARGCCYIPAKQGLQGAQMGQPWCFFP 130
>gi|119393891 acid alpha-glucosidase preproprotein [Homo sapiens]
Length = 952
Score = 38.5 bits (88), Expect = 0.001
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 8/49 (16%)
Query: 31 CTVAPRERQNCG-FPGVTPSQCANKGCCFDDTVRGV-------PWCFYP 71
C V P R +C +T QC +GCC+ +G+ PWCF+P
Sbjct: 82 CDVPPNSRFDCAPDKAITQEQCEARGCCYIPAKQGLQGAQMGQPWCFFP 130
>gi|221316699 maltase-glucoamylase [Homo sapiens]
Length = 1857
Score = 30.8 bits (68), Expect = 0.24
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Query: 37 ERQNCGFPGVTPSQ--CANKGCCFDDT-VRGVPWCFY 70
ER NC P P++ C +GCC++ VPWC+Y
Sbjct: 97 ERINC-IPDQPPTKATCDQRGCCWNPQGAVSVPWCYY 132
>gi|10863987 zona pellucida glycoprotein 4 preproprotein [Homo
sapiens]
Length = 540
Score = 30.4 bits (67), Expect = 0.32
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Query: 28 TETCTVAP-RERQNCGFPGVTPSQCANKGCCFDDTVRGVPWCFYPNTIDVPPEEECEF 84
T+ C P R+R C ++ C GCC+ V C+Y NT+ + E F
Sbjct: 140 TDWCDSIPARDRLPCAPSPISRGDCEGLGCCYSS--EEVNSCYYGNTVTLHCTREGHF 195
>gi|66348148 zona pellucida glycoprotein 1 [Homo sapiens]
Length = 638
Score = 30.4 bits (67), Expect = 0.32
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 29 ETCTVAPRERQNCGFPGVTPSQCANKGCCFDDTVRGVPWCFYPNTIDV 76
E C VA C + C GCC+D+T R VP C+Y NT V
Sbjct: 234 EQCQVASGHLP-CIVRRTSKEACQQAGCCYDNT-REVP-CYYGNTATV 278
>gi|157364974 sucrase-isomaltase [Homo sapiens]
Length = 1827
Score = 29.3 bits (64), Expect = 0.70
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 8/38 (21%)
Query: 38 RQNCGFPGVTPSQ--CANKGCC---FDDTVRGVPWCFY 70
R NC P P++ CA +GCC ++D++ +PWCF+
Sbjct: 74 RINC-IPEQFPTEGICAQRGCCWRPWNDSL--IPWCFF 108
>gi|157909822 pragmin [Homo sapiens]
Length = 1402
Score = 28.9 bits (63), Expect = 0.92
Identities = 11/18 (61%), Positives = 15/18 (83%)
Query: 34 APRERQNCGFPGVTPSQC 51
AP ++Q+ G PGVTPS+C
Sbjct: 371 APEKQQDPGCPGVTPSRC 388
>gi|30089980 chordin [Homo sapiens]
Length = 955
Score = 27.7 bits (60), Expect = 2.0
Identities = 15/52 (28%), Positives = 24/52 (46%)
Query: 8 VICALVLVSMLALGTLAEAQTETCTVAPRERQNCGFPGVTPSQCANKGCCFD 59
VIC V+ + +A + C V P ++ PG+ S+ +GC FD
Sbjct: 736 VICDPVVCPPPSCPHPVQAPDQCCPVCPEKQDVRDLPGLPRSRDPGEGCYFD 787
>gi|110347463 human immunodeficiency virus type I enhancer binding
protein 2 [Homo sapiens]
Length = 2446
Score = 26.6 bits (57), Expect = 4.5
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 58 FDDTVRGVPWCFYPNTIDVPPE 79
FD+ + G FYP T+ +PP+
Sbjct: 566 FDERMTGSDDVFYPGTVGIPPQ 587
>gi|183979980 chemokine (C-C motif) receptor 2 isoform A [Homo
sapiens]
Length = 374
Score = 26.2 bits (56), Expect = 5.9
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 31 CTVAPRERQNCGFPGVTPSQ 50
C +AP ++ CG PGV P +
Sbjct: 322 CRIAPLQKPVCGGPGVRPGK 341
>gi|74048554 cancer susceptibility candidate 5 isoform 2 [Homo
sapiens]
Length = 2316
Score = 26.2 bits (56), Expect = 5.9
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Query: 2 ATMENKVICALVLVSMLALGTLAEAQTETCTVAPRERQNCGF 43
A M+ KVI +V + TL +AQ E+C + R+R+N F
Sbjct: 1250 AAMDEKVIGKVVDQAC----TLEKAQVESCQLNNRDRRNVDF 1287
>gi|74048514 cancer susceptibility candidate 5 isoform 1 [Homo
sapiens]
Length = 2342
Score = 26.2 bits (56), Expect = 5.9
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Query: 2 ATMENKVICALVLVSMLALGTLAEAQTETCTVAPRERQNCGF 43
A M+ KVI +V + TL +AQ E+C + R+R+N F
Sbjct: 1276 AAMDEKVIGKVVDQAC----TLEKAQVESCQLNNRDRRNVDF 1313
>gi|239755545 PREDICTED: otogelin isoform 1 [Homo sapiens]
Length = 2852
Score = 26.2 bits (56), Expect = 5.9
Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 13/69 (18%)
Query: 27 QTETCTVAPRER----QNCGFPGVTPSQCANKGCCFDDTVRGVPWCFYPNTI-------D 75
Q CTV +E+ C P+ C + C D + V C+ PN +
Sbjct: 339 QLRQCTVHCKEKAFTYNEC--IACCPASCHPRASCVDSEIACVDGCYCPNGLIFEDGGCV 396
Query: 76 VPPEEECEF 84
P E CEF
Sbjct: 397 APAECPCEF 405
>gi|239755543 PREDICTED: otogelin isoform 2 [Homo sapiens]
Length = 2924
Score = 26.2 bits (56), Expect = 5.9
Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 13/69 (18%)
Query: 27 QTETCTVAPRER----QNCGFPGVTPSQCANKGCCFDDTVRGVPWCFYPNTI-------D 75
Q CTV +E+ C P+ C + C D + V C+ PN +
Sbjct: 411 QLRQCTVHCKEKAFTYNEC--IACCPASCHPRASCVDSEIACVDGCYCPNGLIFEDGGCV 468
Query: 76 VPPEEECEF 84
P E CEF
Sbjct: 469 APAECPCEF 477
>gi|239749989 PREDICTED: otogelin isoform 2 [Homo sapiens]
Length = 2852
Score = 26.2 bits (56), Expect = 5.9
Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 13/69 (18%)
Query: 27 QTETCTVAPRER----QNCGFPGVTPSQCANKGCCFDDTVRGVPWCFYPNTI-------D 75
Q CTV +E+ C P+ C + C D + V C+ PN +
Sbjct: 339 QLRQCTVHCKEKAFTYNEC--IACCPASCHPRASCVDSEIACVDGCYCPNGLIFEDGGCV 396
Query: 76 VPPEEECEF 84
P E CEF
Sbjct: 397 APAECPCEF 405
>gi|239749987 PREDICTED: otogelin isoform 1 [Homo sapiens]
Length = 2924
Score = 26.2 bits (56), Expect = 5.9
Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 13/69 (18%)
Query: 27 QTETCTVAPRER----QNCGFPGVTPSQCANKGCCFDDTVRGVPWCFYPNTI-------D 75
Q CTV +E+ C P+ C + C D + V C+ PN +
Sbjct: 411 QLRQCTVHCKEKAFTYNEC--IACCPASCHPRASCVDSEIACVDGCYCPNGLIFEDGGCV 468
Query: 76 VPPEEECEF 84
P E CEF
Sbjct: 469 APAECPCEF 477
>gi|239744300 PREDICTED: otogelin isoform 2 [Homo sapiens]
Length = 2852
Score = 26.2 bits (56), Expect = 5.9
Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 13/69 (18%)
Query: 27 QTETCTVAPRER----QNCGFPGVTPSQCANKGCCFDDTVRGVPWCFYPNTI-------D 75
Q CTV +E+ C P+ C + C D + V C+ PN +
Sbjct: 339 QLRQCTVHCKEKAFTYNEC--IACCPASCHPRASCVDSEIACVDGCYCPNGLIFEDGGCV 396
Query: 76 VPPEEECEF 84
P E CEF
Sbjct: 397 APAECPCEF 405
>gi|239744298 PREDICTED: otogelin isoform 1 [Homo sapiens]
Length = 2924
Score = 26.2 bits (56), Expect = 5.9
Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 13/69 (18%)
Query: 27 QTETCTVAPRER----QNCGFPGVTPSQCANKGCCFDDTVRGVPWCFYPNTI-------D 75
Q CTV +E+ C P+ C + C D + V C+ PN +
Sbjct: 411 QLRQCTVHCKEKAFTYNEC--IACCPASCHPRASCVDSEIACVDGCYCPNGLIFEDGGCV 468
Query: 76 VPPEEECEF 84
P E CEF
Sbjct: 469 APAECPCEF 477
>gi|21717816 solute carrier family 15, member 4 [Homo sapiens]
Length = 577
Score = 25.8 bits (55), Expect = 7.8
Identities = 19/55 (34%), Positives = 21/55 (38%), Gaps = 4/55 (7%)
Query: 11 ALVLVSMLALGTLAEAQTETCTVAPRERQNCGFPGVTPSQCANKGCCFDDTVRGV 65
AL L+ MLA LA T NC PG P A CC T G+
Sbjct: 111 ALYLLGMLAFPLLAAPATRAALCGSARLLNCTAPG--PDAAAR--CCSPATFAGL 161
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.136 0.454
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,767,324
Number of Sequences: 37866
Number of extensions: 152135
Number of successful extensions: 367
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 356
Number of HSP's gapped (non-prelim): 24
length of query: 84
length of database: 18,247,518
effective HSP length: 56
effective length of query: 28
effective length of database: 16,127,022
effective search space: 451556616
effective search space used: 451556616
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.