Guide to the Human Genome
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Name: TBCC Sequence: fasta or formatted (346aa) NCBI GI: 4507373
Description:

beta-tubulin cofactor C

Referenced in:

Crystallins and Other Eye Proteins
Tubulins and Microtubules

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.2         32           3
 C cysteine            2.6          9           1
 D aspartate           6.1         21           2
 E glutamate           9.5         33           3
 F phenylalanine       3.8         13           2
 G glycine             3.8         13           1
 H histidine           1.2          4           1
 I isoleucine          2.9         10           1
 K lysine              4.9         17           2
 L leucine            10.4         36           2
 M methionine          0.9          3           1
 N asparagine          3.8         13           2
 P proline             4.0         14           2
 Q glutamine           6.1         21           2
 R arginine            9.0         31           3
 S serine              9.0         31           2
 T threonine           3.8         13           1
 V valine              6.4         22           1
 W tryptophan          1.7          6           1
 Y tyrosine            1.2          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   beta-tubulin cofactor C 
RP2                   0.119   XRP2 protein 
TBCCD1                0.032   TBCC domain containing 1 
TBCCD1                0.032   TBCC domain containing 1 
TNIK                  0.024   TRAF2 and NCK interacting kinase isoform 4 
TNIK                  0.024   TRAF2 and NCK interacting kinase isoform 3 
ENAH                  0.023   enabled homolog isoform a 
ENAH                  0.023   enabled homolog isoform b 
LOC100287500          0.023   PREDICTED: hypothetical protein XP_002343900 
LOC100287466          0.023   PREDICTED: hypothetical protein XP_002343899 
LOC100287428          0.023   PREDICTED: hypothetical protein XP_002343898 
PNMA6A                0.023   paraneoplastic antigen like 6A 
GOLGA3                0.021   Golgi autoantigen, golgin subfamily a, 3 
TCHH                  0.021   trichohyalin 
INCENP                0.021   inner centromere protein antigens 135/155kDa isofor...
INCENP                0.021   inner centromere protein antigens 135/155kDa isofor...
SMTN                  0.021   smoothelin isoform b 
SMTN                  0.021   smoothelin isoform c 
SMTN                  0.021   smoothelin isoform a 
TNIK                  0.020   TRAF2 and NCK interacting kinase isoform 6 
TNIK                  0.020   TRAF2 and NCK interacting kinase isoform 5 
TNIK                  0.020   TRAF2 and NCK interacting kinase isoform 2 
TNIK                  0.020   TRAF2 and NCK interacting kinase isoform 1 
BAT2D1                0.020   HBxAg transactivated protein 2 
KRT32                 0.018   keratin 32 
KIAA0182              0.018   genetic suppressor element 1 isoform 2 
KIAA0182              0.018   genetic suppressor element 1 isoform 1 
GIGYF2                0.018   GRB10 interacting GYF protein 2 isoform c 
GIGYF2                0.018   GRB10 interacting GYF protein 2 isoform a 
GIGYF2                0.018   GRB10 interacting GYF protein 2 isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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