Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 4507143
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4507143 sorting nexin 3 isoform a [Homo sapiens]
(162 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4507143 sorting nexin 3 isoform a [Homo sapiens] 330 2e-91
gi|23111030 sorting nexin 12 [Homo sapiens] 274 2e-74
gi|23111041 sorting nexin 3 isoform b [Homo sapiens] 251 3e-67
gi|23111026 sorting nexin 11 [Homo sapiens] 75 2e-14
gi|23111028 sorting nexin 11 [Homo sapiens] 75 2e-14
gi|23111055 sorting nexin 7 isoform b [Homo sapiens] 74 7e-14
gi|194294540 sorting nexin 7 isoform a [Homo sapiens] 74 7e-14
gi|23111036 sorting nexin 1 isoform c [Homo sapiens] 72 2e-13
gi|23111034 sorting nexin 1 isoform a [Homo sapiens] 72 2e-13
gi|153791707 sorting nexin family member 30 [Homo sapiens] 72 2e-13
gi|23111038 sorting nexin 2 [Homo sapiens] 72 3e-13
gi|23111023 sorting nexin 10 [Homo sapiens] 68 3e-12
gi|23111032 sorting nexin 1 isoform b [Homo sapiens] 64 4e-11
gi|4507145 sorting nexin 4 [Homo sapiens] 53 1e-07
gi|31563383 serum/glucocorticoid regulated kinase 3 isoform 2 [H... 47 6e-06
gi|31563382 serum/glucocorticoid regulated kinase 3 isoform 1 [H... 47 6e-06
gi|75813626 serum/glucocorticoid regulated kinase 3 isoform 1 [H... 47 6e-06
gi|224177511 sorting nexin 18 isoform c [Homo sapiens] 46 1e-05
gi|157057545 sorting nexin 18 isoform a [Homo sapiens] 46 1e-05
gi|157057543 sorting nexin 18 isoform b [Homo sapiens] 46 1e-05
gi|31543452 PX domain containing serine/threonine kinase [Homo s... 46 2e-05
gi|23943858 sorting nexin 8 [Homo sapiens] 44 5e-05
gi|23111047 sorting nexin 5 [Homo sapiens] 44 6e-05
gi|7657599 sorting nexin 5 [Homo sapiens] 44 6e-05
gi|23397574 sorting nexin 33 [Homo sapiens] 42 2e-04
gi|88703041 sorting nexin 6 isoform b [Homo sapiens] 42 3e-04
gi|19923723 ribosomal protein S6 kinase, 52kDa, polypeptide 1 is... 40 9e-04
gi|7706706 sorting nexin 9 [Homo sapiens] 38 0.003
gi|209915591 ribosomal protein S6 kinase, 52kDa, polypeptide 1 i... 37 0.006
gi|23238244 sorting nexin 16 isoform a [Homo sapiens] 37 0.007
>gi|4507143 sorting nexin 3 isoform a [Homo sapiens]
Length = 162
Score = 330 bits (847), Expect = 2e-91
Identities = 162/162 (100%), Positives = 162/162 (100%)
Query: 1 MAETVADTRRLITKPQNLNDAYGPPSNFLEIDVSNPQTVGVGRGRFTTYEIRVKTNLPIF 60
MAETVADTRRLITKPQNLNDAYGPPSNFLEIDVSNPQTVGVGRGRFTTYEIRVKTNLPIF
Sbjct: 1 MAETVADTRRLITKPQNLNDAYGPPSNFLEIDVSNPQTVGVGRGRFTTYEIRVKTNLPIF 60
Query: 61 KLKESTVRRRYSDFEWLRSELERESKVVVPPLPGKAFLRQLPFRGDDGIFDDNFIEERKQ 120
KLKESTVRRRYSDFEWLRSELERESKVVVPPLPGKAFLRQLPFRGDDGIFDDNFIEERKQ
Sbjct: 61 KLKESTVRRRYSDFEWLRSELERESKVVVPPLPGKAFLRQLPFRGDDGIFDDNFIEERKQ 120
Query: 121 GLEQFINKVAGHPLAQNERCLHMFLQDEIIDKSYTPSKIRHA 162
GLEQFINKVAGHPLAQNERCLHMFLQDEIIDKSYTPSKIRHA
Sbjct: 121 GLEQFINKVAGHPLAQNERCLHMFLQDEIIDKSYTPSKIRHA 162
>gi|23111030 sorting nexin 12 [Homo sapiens]
Length = 162
Score = 274 bits (701), Expect = 2e-74
Identities = 128/161 (79%), Positives = 150/161 (93%), Gaps = 1/161 (0%)
Query: 1 MAET-VADTRRLITKPQNLNDAYGPPSNFLEIDVSNPQTVGVGRGRFTTYEIRVKTNLPI 59
M++T VADTRRL +KPQ+L DAYGPPSNFLEID+ NPQTVGVGR RFTTYE+R++TNLPI
Sbjct: 1 MSDTAVADTRRLNSKPQDLTDAYGPPSNFLEIDIFNPQTVGVGRARFTTYEVRMRTNLPI 60
Query: 60 FKLKESTVRRRYSDFEWLRSELERESKVVVPPLPGKAFLRQLPFRGDDGIFDDNFIEERK 119
FKLKES VRRRYSDFEWL++ELER+SK+VVPPLPGKA RQLPFRGD+GIF+++FIEER+
Sbjct: 61 FKLKESCVRRRYSDFEWLKNELERDSKIVVPPLPGKALKRQLPFRGDEGIFEESFIEERR 120
Query: 120 QGLEQFINKVAGHPLAQNERCLHMFLQDEIIDKSYTPSKIR 160
QGLEQFINK+AGHPLAQNERCLHMFLQ+E ID++Y P K+R
Sbjct: 121 QGLEQFINKIAGHPLAQNERCLHMFLQEEAIDRNYVPGKVR 161
>gi|23111041 sorting nexin 3 isoform b [Homo sapiens]
Length = 130
Score = 251 bits (640), Expect = 3e-67
Identities = 130/162 (80%), Positives = 130/162 (80%), Gaps = 32/162 (19%)
Query: 1 MAETVADTRRLITKPQNLNDAYGPPSNFLEIDVSNPQTVGVGRGRFTTYEIRVKTNLPIF 60
MAETVADTRRLITKPQNLNDAYGPPSNFLEIDVSNPQTVGVGRGRFTTYEIRVK
Sbjct: 1 MAETVADTRRLITKPQNLNDAYGPPSNFLEIDVSNPQTVGVGRGRFTTYEIRVK------ 54
Query: 61 KLKESTVRRRYSDFEWLRSELERESKVVVPPLPGKAFLRQLPFRGDDGIFDDNFIEERKQ 120
VVVPPLPGKAFLRQLPFRGDDGIFDDNFIEERKQ
Sbjct: 55 --------------------------VVVPPLPGKAFLRQLPFRGDDGIFDDNFIEERKQ 88
Query: 121 GLEQFINKVAGHPLAQNERCLHMFLQDEIIDKSYTPSKIRHA 162
GLEQFINKVAGHPLAQNERCLHMFLQDEIIDKSYTPSKIRHA
Sbjct: 89 GLEQFINKVAGHPLAQNERCLHMFLQDEIIDKSYTPSKIRHA 130
>gi|23111026 sorting nexin 11 [Homo sapiens]
Length = 270
Score = 75.5 bits (184), Expect = 2e-14
Identities = 46/123 (37%), Positives = 69/123 (56%), Gaps = 11/123 (8%)
Query: 29 LEIDVSNPQTVGVGR-GRFTTYEIRVKTNLPIFKLKESTVRRRYSDFEWLRSELERESKV 87
+ + V +P+ G + Y+I + TN F K S VRRRY +F WLR +L+R + +
Sbjct: 17 ITVRVQDPRVQNEGSWNSYVDYKIFLHTNSKAFTAKTSCVRRRYREFVWLRKQLQRNAGL 76
Query: 88 V-VPPLPGKAFLRQLPFRGDDGIFDDNFIEERKQGLEQFINKVAGHPLAQNERCLHMFLQ 146
V VP LPGK+ F G D FIE+R+QGL+ F+ KV + ++ LH+FLQ
Sbjct: 77 VPVPELPGKS-----TFFGT----SDEFIEKRRQGLQHFLEKVLQSVVLLSDSQLHLFLQ 127
Query: 147 DEI 149
++
Sbjct: 128 SQL 130
>gi|23111028 sorting nexin 11 [Homo sapiens]
Length = 270
Score = 75.5 bits (184), Expect = 2e-14
Identities = 46/123 (37%), Positives = 69/123 (56%), Gaps = 11/123 (8%)
Query: 29 LEIDVSNPQTVGVGR-GRFTTYEIRVKTNLPIFKLKESTVRRRYSDFEWLRSELERESKV 87
+ + V +P+ G + Y+I + TN F K S VRRRY +F WLR +L+R + +
Sbjct: 17 ITVRVQDPRVQNEGSWNSYVDYKIFLHTNSKAFTAKTSCVRRRYREFVWLRKQLQRNAGL 76
Query: 88 V-VPPLPGKAFLRQLPFRGDDGIFDDNFIEERKQGLEQFINKVAGHPLAQNERCLHMFLQ 146
V VP LPGK+ F G D FIE+R+QGL+ F+ KV + ++ LH+FLQ
Sbjct: 77 VPVPELPGKS-----TFFGT----SDEFIEKRRQGLQHFLEKVLQSVVLLSDSQLHLFLQ 127
Query: 147 DEI 149
++
Sbjct: 128 SQL 130
>gi|23111055 sorting nexin 7 isoform b [Homo sapiens]
Length = 336
Score = 73.6 bits (179), Expect = 7e-14
Identities = 44/123 (35%), Positives = 64/123 (52%), Gaps = 6/123 (4%)
Query: 24 PPSNFLEIDVSNPQTVGVGRGRFTTYEIRVKTNLPIFKLKESTVRRRYSDFEWLRSELER 83
P L I V P++ F TY I KT+ F E VRRRY DF WL+ +LE
Sbjct: 27 PDLKDLFITVDEPESHVTTIETFITYRIITKTSRGEFDSSEFEVRRRYQDFLWLKGKLEE 86
Query: 84 -ESKVVVPPLPGKAFLRQLPFRGDDGIFDDNFIEERKQGLEQFINKVAGHPLAQNERCLH 142
+++PPLP K ++ + R F+D+FIE R++ L +F+N++A HP
Sbjct: 87 AHPTLIIPPLPEKFIVKGMVER-----FNDDFIETRRKALHKFLNRIADHPTLTFNEDFK 141
Query: 143 MFL 145
+FL
Sbjct: 142 IFL 144
>gi|194294540 sorting nexin 7 isoform a [Homo sapiens]
Length = 451
Score = 73.6 bits (179), Expect = 7e-14
Identities = 44/123 (35%), Positives = 64/123 (52%), Gaps = 6/123 (4%)
Query: 24 PPSNFLEIDVSNPQTVGVGRGRFTTYEIRVKTNLPIFKLKESTVRRRYSDFEWLRSELER 83
P L I V P++ F TY I KT+ F E VRRRY DF WL+ +LE
Sbjct: 91 PDLKDLFITVDEPESHVTTIETFITYRIITKTSRGEFDSSEFEVRRRYQDFLWLKGKLEE 150
Query: 84 -ESKVVVPPLPGKAFLRQLPFRGDDGIFDDNFIEERKQGLEQFINKVAGHPLAQNERCLH 142
+++PPLP K ++ + R F+D+FIE R++ L +F+N++A HP
Sbjct: 151 AHPTLIIPPLPEKFIVKGMVER-----FNDDFIETRRKALHKFLNRIADHPTLTFNEDFK 205
Query: 143 MFL 145
+FL
Sbjct: 206 IFL 208
>gi|23111036 sorting nexin 1 isoform c [Homo sapiens]
Length = 474
Score = 72.4 bits (176), Expect = 2e-13
Identities = 35/129 (27%), Positives = 72/129 (55%), Gaps = 4/129 (3%)
Query: 29 LEIDVSNPQTVGVGRGRFTTYEIRVKTNLPIFKLKESTVRRRYSDFEWL---RSELERES 85
L + +++P+ +G G + Y++ +T+LP+F+ K+ V+RR+SDF L SE ++
Sbjct: 145 LTVGITDPEKIGDGMNAYVAYKVTTQTSLPLFRSKQFAVKRRFSDFLGLYEKLSEKHSQN 204
Query: 86 KVVVPPLPGKAFLRQLPFR-GDDGIFDDNFIEERKQGLEQFINKVAGHPLAQNERCLHMF 144
+VPP P K+ + + G + F+E+R+ LE+++ ++ HP + + F
Sbjct: 205 GFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMLQDPDVREF 264
Query: 145 LQDEIIDKS 153
L+ E + ++
Sbjct: 265 LEKEELPRA 273
>gi|23111034 sorting nexin 1 isoform a [Homo sapiens]
Length = 522
Score = 72.4 bits (176), Expect = 2e-13
Identities = 35/129 (27%), Positives = 72/129 (55%), Gaps = 4/129 (3%)
Query: 29 LEIDVSNPQTVGVGRGRFTTYEIRVKTNLPIFKLKESTVRRRYSDFEWL---RSELERES 85
L + +++P+ +G G + Y++ +T+LP+F+ K+ V+RR+SDF L SE ++
Sbjct: 145 LTVGITDPEKIGDGMNAYVAYKVTTQTSLPLFRSKQFAVKRRFSDFLGLYEKLSEKHSQN 204
Query: 86 KVVVPPLPGKAFLRQLPFR-GDDGIFDDNFIEERKQGLEQFINKVAGHPLAQNERCLHMF 144
+VPP P K+ + + G + F+E+R+ LE+++ ++ HP + + F
Sbjct: 205 GFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMLQDPDVREF 264
Query: 145 LQDEIIDKS 153
L+ E + ++
Sbjct: 265 LEKEELPRA 273
>gi|153791707 sorting nexin family member 30 [Homo sapiens]
Length = 437
Score = 72.4 bits (176), Expect = 2e-13
Identities = 44/141 (31%), Positives = 74/141 (52%), Gaps = 7/141 (4%)
Query: 6 ADTRRLITKPQNLNDAYGPPSNFLEIDVSNPQTVGVGRGRFTTYEIRVKTNLPIFKLKES 65
A + L+ + Q L+D + L + V +P+ + TY I K+ F L E
Sbjct: 69 ASSSSLLNRLQ-LDDDIDGETRDLFVIVDDPKKHVCTMETYITYRITTKSTRVEFDLPEY 127
Query: 66 TVRRRYSDFEWLRSELERESKV-VVPPLPGKAFLRQLPFRGDDGIFDDNFIEERKQGLEQ 124
+VRRRY DF+WLRS+LE ++PPLP K ++ + R F + F+E R++ L++
Sbjct: 128 SVRRRYQDFDWLRSKLEESQPTHLIPPLPEKFVVKGVVDR-----FSEEFVETRRKALDK 182
Query: 125 FINKVAGHPLAQNERCLHMFL 145
F+ ++ HP+ ++FL
Sbjct: 183 FLKRITDHPVLSFNEHFNIFL 203
>gi|23111038 sorting nexin 2 [Homo sapiens]
Length = 519
Score = 71.6 bits (174), Expect = 3e-13
Identities = 39/129 (30%), Positives = 68/129 (52%), Gaps = 4/129 (3%)
Query: 29 LEIDVSNPQTVGVGRGRFTTYEIRVKTNLPIFKLKESTVRRRYSDFEWLRSELERE---S 85
+EI VS+P+ VG G + Y + KT+L +F E +V+RR+SDF L S+L +
Sbjct: 142 IEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSKSEFSVKRRFSDFLGLHSKLASKYLHV 201
Query: 86 KVVVPPLPGKAFLRQLPFR-GDDGIFDDNFIEERKQGLEQFINKVAGHPLAQNERCLHMF 144
+VPP P K+ + + G + F+E+R+ LE+++ + HP + L F
Sbjct: 202 GYIVPPAPEKSIVGMTKVKVGKEDSSSTEFVEKRRAALERYLQRTVKHPTLLQDPDLRQF 261
Query: 145 LQDEIIDKS 153
L+ + ++
Sbjct: 262 LESSELPRA 270
>gi|23111023 sorting nexin 10 [Homo sapiens]
Length = 201
Score = 68.2 bits (165), Expect = 3e-12
Identities = 38/105 (36%), Positives = 57/105 (54%), Gaps = 9/105 (8%)
Query: 46 FTTYEIRVKTNLPIFKLKESTVRRRYSDFEWLRSELERESKVV-VPPLPGKAFLRQLPFR 104
+ YEI + TN F +K S VRRRY +F WLR L+ + +V +P LP K + R
Sbjct: 29 YIDYEICIHTNSMCFTMKTSCVRRRYREFVWLRQRLQSNALLVQLPELPSKNLFFNMNNR 88
Query: 105 GDDGIFDDNFIEERKQGLEQFINKVAGHPLAQNERCLHMFLQDEI 149
+++R+QGLE F+ KV + L ++ LH+FLQ +
Sbjct: 89 --------QHVDQRRQGLEDFLRKVLQNALLLSDSSLHLFLQSHL 125
>gi|23111032 sorting nexin 1 isoform b [Homo sapiens]
Length = 457
Score = 64.3 bits (155), Expect = 4e-11
Identities = 33/118 (27%), Positives = 64/118 (54%), Gaps = 4/118 (3%)
Query: 40 GVGRGRFTTYEIRVKTNLPIFKLKESTVRRRYSDFEWL---RSELERESKVVVPPLPGKA 96
G G + Y++ +T+LP+F+ K+ V+RR+SDF L SE ++ +VPP P K+
Sbjct: 91 GDGMNAYVAYKVTTQTSLPLFRSKQFAVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKS 150
Query: 97 FLRQLPFR-GDDGIFDDNFIEERKQGLEQFINKVAGHPLAQNERCLHMFLQDEIIDKS 153
+ + G + F+E+R+ LE+++ ++ HP + + FL+ E + ++
Sbjct: 151 LIGMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMLQDPDVREFLEKEELPRA 208
>gi|4507145 sorting nexin 4 [Homo sapiens]
Length = 450
Score = 53.1 bits (126), Expect = 1e-07
Identities = 32/81 (39%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 69 RRYSDFEWLRSEL-ERESKVVVPPLPGKAFLRQLPFRGDDGIFDDNFIEERKQGLEQFIN 127
RRYS+FE LRS L +VVPPLP K D + D +F+E R+ GLE F+
Sbjct: 105 RRYSEFELLRSYLLVYYPHIVVPPLPEKRAEFVWHKLSADNM-DPDFVERRRIGLENFLL 163
Query: 128 KVAGHPLAQNERCLHMFLQDE 148
++A HP+ ++ ++FL E
Sbjct: 164 RIASHPILCRDKIFYLFLTQE 184
>gi|31563383 serum/glucocorticoid regulated kinase 3 isoform 2 [Homo
sapiens]
Length = 464
Score = 47.4 bits (111), Expect = 6e-06
Identities = 33/114 (28%), Positives = 55/114 (48%), Gaps = 13/114 (11%)
Query: 45 RFTTYEIRVKTNLPIFKLKESTVRRRYSDFEWLRSELERESKVVVPPLPGKAFLRQLPFR 104
RFT Y++ V E V RRY++F+ L + L+++ + +P K
Sbjct: 30 RFTVYKVLVSVGR-----SEWFVFRRYAEFDKLYNTLKKQFPAMALKIPAKRIF------ 78
Query: 105 GDDGIFDDNFIEERKQGLEQFINKVAGHPLAQNERCLHMFLQDEIIDKSYTPSK 158
GD+ FD +FI++R+ GL +FI + +P N + FLQ + PS+
Sbjct: 79 GDN--FDPDFIKQRRAGLNEFIQNLVRYPELYNHPDVRAFLQMDSPKHQSDPSE 130
>gi|31563382 serum/glucocorticoid regulated kinase 3 isoform 1 [Homo
sapiens]
Length = 496
Score = 47.4 bits (111), Expect = 6e-06
Identities = 33/114 (28%), Positives = 55/114 (48%), Gaps = 13/114 (11%)
Query: 45 RFTTYEIRVKTNLPIFKLKESTVRRRYSDFEWLRSELERESKVVVPPLPGKAFLRQLPFR 104
RFT Y++ V E V RRY++F+ L + L+++ + +P K
Sbjct: 30 RFTVYKVLVSVGR-----SEWFVFRRYAEFDKLYNTLKKQFPAMALKIPAKRIF------ 78
Query: 105 GDDGIFDDNFIEERKQGLEQFINKVAGHPLAQNERCLHMFLQDEIIDKSYTPSK 158
GD+ FD +FI++R+ GL +FI + +P N + FLQ + PS+
Sbjct: 79 GDN--FDPDFIKQRRAGLNEFIQNLVRYPELYNHPDVRAFLQMDSPKHQSDPSE 130
>gi|75813626 serum/glucocorticoid regulated kinase 3 isoform 1 [Homo
sapiens]
Length = 496
Score = 47.4 bits (111), Expect = 6e-06
Identities = 33/114 (28%), Positives = 55/114 (48%), Gaps = 13/114 (11%)
Query: 45 RFTTYEIRVKTNLPIFKLKESTVRRRYSDFEWLRSELERESKVVVPPLPGKAFLRQLPFR 104
RFT Y++ V E V RRY++F+ L + L+++ + +P K
Sbjct: 30 RFTVYKVLVSVGR-----SEWFVFRRYAEFDKLYNTLKKQFPAMALKIPAKRIF------ 78
Query: 105 GDDGIFDDNFIEERKQGLEQFINKVAGHPLAQNERCLHMFLQDEIIDKSYTPSK 158
GD+ FD +FI++R+ GL +FI + +P N + FLQ + PS+
Sbjct: 79 GDN--FDPDFIKQRRAGLNEFIQNLVRYPELYNHPDVRAFLQMDSPKHQSDPSE 130
>gi|224177511 sorting nexin 18 isoform c [Homo sapiens]
Length = 591
Score = 46.2 bits (108), Expect = 1e-05
Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 15/104 (14%)
Query: 31 IDVSNPQTVGVGRGRFTTYEIRVKTNLPIFKLKESTVRRRYSDFEWLRSELERESKVVVP 90
ID QT G + +Y++ V T+ + V RRY F+WL + L + V+
Sbjct: 280 IDDPTKQTKFKGMKSYISYKL-VPTHTQV------PVHRRYKHFDWLYARLAEKFPVISV 332
Query: 91 PLPGKAFLRQLPFRGDDGIFDDNFIEERKQGLEQFINKVAGHPL 134
P LP + G F+++FI +R++GL ++N +A HP+
Sbjct: 333 P--------HLPEKQATGRFEEDFISKRRKGLIWWMNHMASHPV 368
>gi|157057545 sorting nexin 18 isoform a [Homo sapiens]
Length = 624
Score = 46.2 bits (108), Expect = 1e-05
Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 15/104 (14%)
Query: 31 IDVSNPQTVGVGRGRFTTYEIRVKTNLPIFKLKESTVRRRYSDFEWLRSELERESKVVVP 90
ID QT G + +Y++ V T+ + V RRY F+WL + L + V+
Sbjct: 280 IDDPTKQTKFKGMKSYISYKL-VPTHTQV------PVHRRYKHFDWLYARLAEKFPVISV 332
Query: 91 PLPGKAFLRQLPFRGDDGIFDDNFIEERKQGLEQFINKVAGHPL 134
P LP + G F+++FI +R++GL ++N +A HP+
Sbjct: 333 P--------HLPEKQATGRFEEDFISKRRKGLIWWMNHMASHPV 368
>gi|157057543 sorting nexin 18 isoform b [Homo sapiens]
Length = 628
Score = 46.2 bits (108), Expect = 1e-05
Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 15/104 (14%)
Query: 31 IDVSNPQTVGVGRGRFTTYEIRVKTNLPIFKLKESTVRRRYSDFEWLRSELERESKVVVP 90
ID QT G + +Y++ V T+ + V RRY F+WL + L + V+
Sbjct: 280 IDDPTKQTKFKGMKSYISYKL-VPTHTQV------PVHRRYKHFDWLYARLAEKFPVISV 332
Query: 91 PLPGKAFLRQLPFRGDDGIFDDNFIEERKQGLEQFINKVAGHPL 134
P LP + G F+++FI +R++GL ++N +A HP+
Sbjct: 333 P--------HLPEKQATGRFEEDFISKRRKGLIWWMNHMASHPV 368
>gi|31543452 PX domain containing serine/threonine kinase [Homo
sapiens]
Length = 578
Score = 45.8 bits (107), Expect = 2e-05
Identities = 36/136 (26%), Positives = 62/136 (45%), Gaps = 17/136 (12%)
Query: 24 PPSNFLEIDVSNPQTVGVGRGR----FTTYEIRVKTNLPIFKLKESTVRRRYSDFEWLRS 79
PP+ + +D + P T + + T Y IRV+ + + + + RRYSDF+ L +
Sbjct: 7 PPAGKVLLDDTVPLTAAIEASQSLQSHTEYIIRVQRGISVENSWQ--IVRRYSDFDLLNN 64
Query: 80 ELERESKVVVPPLPGKAFLRQLPFRGDDGIFDDNFIEERKQGLEQFINKVAGHPLAQNER 139
L+ + PLP K + G D FI ER++GL+ ++N + + + N
Sbjct: 65 SLQIAGLSL--PLPPKKLI---------GNMDREFIAERQKGLQNYLNVITTNHILSNCE 113
Query: 140 CLHMFLQDEIIDKSYT 155
+ FL +YT
Sbjct: 114 LVKKFLDPNNYSANYT 129
>gi|23943858 sorting nexin 8 [Homo sapiens]
Length = 465
Score = 44.3 bits (103), Expect = 5e-05
Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 11/83 (13%)
Query: 64 ESTVRRRYSDFEWLRSELERESKV-VVPPLPGKAFLRQLPFRGDDGIFDDNFIEERKQGL 122
+S+V RRY+DF + L + +VP LP K L D FIE R++ L
Sbjct: 103 KSSVYRRYNDFVVFQEMLLHKFPYRMVPALPPKRMLGA----------DREFIEARRRAL 152
Query: 123 EQFINKVAGHPLAQNERCLHMFL 145
++F+N VA HPL + L +FL
Sbjct: 153 KRFVNLVARHPLFSEDVVLKLFL 175
>gi|23111047 sorting nexin 5 [Homo sapiens]
Length = 404
Score = 43.9 bits (102), Expect = 6e-05
Identities = 28/121 (23%), Positives = 53/121 (43%), Gaps = 23/121 (19%)
Query: 49 YEIRVKTNLPIFKLKESTVRRRYSDFEWLRSELERESK---VVVPPLP------GKAFLR 99
+ + KT LP F+ E +V R++ DF WL L + +++PP P G
Sbjct: 47 FTVHTKTTLPTFQSPEFSVTRQHEDFVWLHDTLIETTDYAGLIIPPAPTKPDFDGPREKM 106
Query: 100 QLPFRGDDGIFDDNFIEERKQ--------------GLEQFINKVAGHPLAQNERCLHMFL 145
Q G+ + + F + +++ E F+ +++ HP+ +R H+FL
Sbjct: 107 QKLGEGEGSMTKEEFAKMKQELEAEYLAVFKKTVSSHEVFLQRLSSHPVLSKDRNFHVFL 166
Query: 146 Q 146
+
Sbjct: 167 E 167
>gi|7657599 sorting nexin 5 [Homo sapiens]
Length = 404
Score = 43.9 bits (102), Expect = 6e-05
Identities = 28/121 (23%), Positives = 53/121 (43%), Gaps = 23/121 (19%)
Query: 49 YEIRVKTNLPIFKLKESTVRRRYSDFEWLRSELERESK---VVVPPLP------GKAFLR 99
+ + KT LP F+ E +V R++ DF WL L + +++PP P G
Sbjct: 47 FTVHTKTTLPTFQSPEFSVTRQHEDFVWLHDTLIETTDYAGLIIPPAPTKPDFDGPREKM 106
Query: 100 QLPFRGDDGIFDDNFIEERKQ--------------GLEQFINKVAGHPLAQNERCLHMFL 145
Q G+ + + F + +++ E F+ +++ HP+ +R H+FL
Sbjct: 107 QKLGEGEGSMTKEEFAKMKQELEAEYLAVFKKTVSSHEVFLQRLSSHPVLSKDRNFHVFL 166
Query: 146 Q 146
+
Sbjct: 167 E 167
>gi|23397574 sorting nexin 33 [Homo sapiens]
Length = 574
Score = 42.4 bits (98), Expect = 2e-04
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 9/96 (9%)
Query: 65 STVRRRYSDFEWLRSELERESKVVVPPLPGKAFLRQLPFRGDDGIFDDNFIEERKQGLEQ 124
S V RRY F+WL + L + V+ P LP + G F+++FIE+RK+ L
Sbjct: 261 SPVYRRYKHFDWLYNRLLHKFTVISVP--------HLPEKQATGRFEEDFIEKRKRRLIL 312
Query: 125 FINKVAGHPLAQNERCLHMFLQDEIIDKSYTPSKIR 160
+++ + HP+ FL + DK + K R
Sbjct: 313 WMDHMTSHPVLSQYEGFQHFLSC-LDDKQWKMGKRR 347
>gi|88703041 sorting nexin 6 isoform b [Homo sapiens]
Length = 418
Score = 41.6 bits (96), Expect = 3e-04
Identities = 35/141 (24%), Positives = 63/141 (44%), Gaps = 27/141 (19%)
Query: 29 LEIDVSNPQTVGVGRGRFTTYEIRVKTNLPIFKLKESTVRRRYSDFEWLRS---ELERES 85
L++D+S+ + + + K++LP FK E +V R++ +F WL E E +
Sbjct: 44 LQVDISD----ALSERDKVKFTVHTKSSLPNFKQNEFSVVRQHEEFIWLHDSFVENEDYA 99
Query: 86 KVVVPPLPGK----AFLRQLPFRGD-DGIFDDNFIEERKQGLEQ---------------F 125
++PP P + A +L G+ +G + KQ LE F
Sbjct: 100 GYIIPPAPPRPDFDASREKLQKLGEGEGSMTKEEFTKMKQELEAEYLAIFKKTVAMHEVF 159
Query: 126 INKVAGHPLAQNERCLHMFLQ 146
+ +VA HP+ + + H+FL+
Sbjct: 160 LCRVAAHPILRRDLNFHVFLE 180
>gi|19923723 ribosomal protein S6 kinase, 52kDa, polypeptide 1
isoform a [Homo sapiens]
Length = 1066
Score = 40.0 bits (92), Expect = 9e-04
Identities = 36/117 (30%), Positives = 52/117 (44%), Gaps = 19/117 (16%)
Query: 46 FTTYEI--RVKTNLPIFKLKESTVRRRYSDFEWLRSELE-------RESKVVVPPLPGKA 96
+T Y++ RV + ++E V +RYSDF+ L EL R S++ P G
Sbjct: 27 YTVYKVTARVVSRRNPEDVQEIIVWKRYSDFKKLHKELWQIHKNLFRHSELFPPFAKGIV 86
Query: 97 FLRQLPFRGDDGIFDDNFIEERKQGLEQFINKVAGHPLAQNERCLHMFLQDEIIDKS 153
F G FD+ IEER+Q E + A P N + L F + II+ S
Sbjct: 87 F----------GRFDETVIEERRQCAEDLLQFSANIPALYNSKQLEDFFKGGIINDS 133
>gi|7706706 sorting nexin 9 [Homo sapiens]
Length = 595
Score = 38.1 bits (87), Expect = 0.003
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 11/82 (13%)
Query: 66 TVRRRYSDFEWLRSEL--ERESKVVVPPLPGKAFLRQLPFRGDDGIFDDNFIEERKQGLE 123
+V RY F+WL L + S + +P LP K G F++ FI+ R + L+
Sbjct: 282 SVNHRYKHFDWLYERLLVKFGSAIPIPSLPDKQVT---------GRFEEEFIKMRMERLQ 332
Query: 124 QFINKVAGHPLAQNERCLHMFL 145
++ ++ HP+ FL
Sbjct: 333 AWMTRMCRHPVISESEVFQQFL 354
>gi|209915591 ribosomal protein S6 kinase, 52kDa, polypeptide 1
isoform b [Homo sapiens]
Length = 1054
Score = 37.4 bits (85), Expect = 0.006
Identities = 31/94 (32%), Positives = 41/94 (43%), Gaps = 17/94 (18%)
Query: 67 VRRRYSDFEWLRSELE-------RESKVVVPPLPGKAFLRQLPFRGDDGIFDDNFIEERK 119
V +RYSDF+ L EL R S++ P G F G FD+ IEER+
Sbjct: 38 VWKRYSDFKKLHKELWQIHKNLFRHSELFPPFAKGIVF----------GRFDETVIEERR 87
Query: 120 QGLEQFINKVAGHPLAQNERCLHMFLQDEIIDKS 153
Q E + A P N + L F + II+ S
Sbjct: 88 QCAEDLLQFSANIPALYNSKQLEDFFKGGIINDS 121
>gi|23238244 sorting nexin 16 isoform a [Homo sapiens]
Length = 344
Score = 37.0 bits (84), Expect = 0.007
Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 16/105 (15%)
Query: 43 RGRFTTYEIRVKTNLPIFKLKEST--VRRRYSDFEWLRSELERESKVVVPPLPGKAFLRQ 100
R +FT Y+I VK K E + V RRY+DF L +L+ LP K + +
Sbjct: 121 RAKFTVYKILVK------KTPEESWVVFRRYTDFSRLNDKLKEMFPGFRLALPPKRWFKD 174
Query: 101 LPFRGDDGIFDDNFIEERKQGLEQFINKVAGHPLAQNERCLHMFL 145
++ +F+E+R+ GL+ F+ + H N + FL
Sbjct: 175 N--------YNADFLEDRQLGLQAFLQNLVAHKDIANCLAVREFL 211
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.138 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,517,367
Number of Sequences: 37866
Number of extensions: 271368
Number of successful extensions: 588
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 527
Number of HSP's gapped (non-prelim): 51
length of query: 162
length of database: 18,247,518
effective HSP length: 94
effective length of query: 68
effective length of database: 14,688,114
effective search space: 998791752
effective search space used: 998791752
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.