Search of human proteins with 4507131

Search of human proteins with 4507131

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4507131 small nuclear ribonucleoprotein polypeptide F [Homo
sapiens]
         (86 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4507131 small nuclear ribonucleoprotein polypeptide F [Homo s...   179   3e-46
gi|5901998 Sm protein F [Homo sapiens]                                 75   1e-14
gi|6912486 U6 snRNA-associated Sm-like protein 4 [Homo sapiens]        38   0.002
gi|10863977 LSM2 homolog, U6 small nuclear RNA associated [Homo ...    32   0.11 
gi|4507129 small nuclear ribonucleoprotein polypeptide E [Homo s...    28   1.6  
gi|169213675 PREDICTED: similar to hCG23490 [Homo sapiens]             28   2.0  
gi|169214137 PREDICTED: similar to hCG23490 [Homo sapiens]             28   2.0  
gi|169213483 PREDICTED: hypothetical protein LOC100130109 [Homo ...    28   2.0  
gi|7657313 Lsm1 protein [Homo sapiens]                                 27   2.7  
gi|14210514 piggyBac transposable element derived 1 [Homo sapiens]     27   4.5  
gi|14249632 LSM10, U7 small nuclear RNA associated [Homo sapiens]      27   4.5  
gi|13027640 aminoadipate-semialdehyde synthase [Homo sapiens]          26   7.7  

>gi|4507131 small nuclear ribonucleoprotein polypeptide F [Homo
          sapiens]
          Length = 86

 Score =  179 bits (455), Expect = 3e-46
 Identities = 86/86 (100%), Positives = 86/86 (100%)

Query: 1  MSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLG 60
          MSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLG
Sbjct: 1  MSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLG 60

Query: 61 EVLIRCNNVLYIRGVEEEEEDGEMRE 86
          EVLIRCNNVLYIRGVEEEEEDGEMRE
Sbjct: 61 EVLIRCNNVLYIRGVEEEEEDGEMRE 86


>gi|5901998 Sm protein F [Homo sapiens]
          Length = 80

 Score = 75.1 bits (183), Expect = 1e-14
 Identities = 34/66 (51%), Positives = 45/66 (68%)

Query: 7  PKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRC 66
          P  FL  + G+PV+VKL  G++Y+G L  +DGYMN+ L  TEEY++G L    G+  IR 
Sbjct: 8  PSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRG 67

Query: 67 NNVLYI 72
          NNVLYI
Sbjct: 68 NNVLYI 73


>gi|6912486 U6 snRNA-associated Sm-like protein 4 [Homo sapiens]
          Length = 139

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 7/75 (9%)

Query: 7  PKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYI----DGALSGHLGEV 62
          P   L      P++V+LK G  Y G+LVS D +MN+   N  E I    DG     + E 
Sbjct: 3  PLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNI---NLREVICTSRDGDKFWRMPEC 59

Query: 63 LIRCNNVLYIRGVEE 77
           IR + + Y+R  +E
Sbjct: 60 YIRGSTIKYLRIPDE 74


>gi|10863977 LSM2 homolog, U6 small nuclear RNA associated [Homo
          sapiens]
          Length = 95

 Score = 32.0 bits (71), Expect = 0.11
 Identities = 16/37 (43%), Positives = 23/37 (62%)

Query: 10 FLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLAN 46
          F   L GK V+V+LK  +   G L SVD Y+N++L +
Sbjct: 6  FFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTD 42


>gi|4507129 small nuclear ribonucleoprotein polypeptide E [Homo
          sapiens]
          Length = 92

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 27 MEYKGYLVSVDGYMNMQLANTEEYIDGALS-GHLGEVLIRCNNVLYIRGV 75
          M  +G ++  D YMN+ L + EE      S   LG ++++ +N+  ++ V
Sbjct: 41 MRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSV 90


>gi|169213675 PREDICTED: similar to hCG23490 [Homo sapiens]
          Length = 92

 Score = 27.7 bits (60), Expect = 2.0
 Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 1/50 (2%)

Query: 27 MEYKGYLVSVDGYMNMQLANTEEYIDGALS-GHLGEVLIRCNNVLYIRGV 75
          M  +G ++  D YMN+ L + EE      S   LG ++++  N+  ++ V
Sbjct: 41 MRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGGNITLLQSV 90


>gi|169214137 PREDICTED: similar to hCG23490 [Homo sapiens]
          Length = 92

 Score = 27.7 bits (60), Expect = 2.0
 Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 1/50 (2%)

Query: 27 MEYKGYLVSVDGYMNMQLANTEEYIDGALS-GHLGEVLIRCNNVLYIRGV 75
          M  +G ++  D YMN+ L + EE      S   LG ++++  N+  ++ V
Sbjct: 41 MRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGGNITLLQSV 90


>gi|169213483 PREDICTED: hypothetical protein LOC100130109 [Homo
          sapiens]
          Length = 92

 Score = 27.7 bits (60), Expect = 2.0
 Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 1/50 (2%)

Query: 27 MEYKGYLVSVDGYMNMQLANTEEYIDGALS-GHLGEVLIRCNNVLYIRGV 75
          M  +G ++  D YMN+ L + EE      S   LG ++++  N+  ++ V
Sbjct: 41 MRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGGNITLLQSV 90


>gi|7657313 Lsm1 protein [Homo sapiens]
          Length = 133

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 3/67 (4%)

Query: 17 KPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYID-GALSGHL--GEVLIRCNNVLYIR 73
          K  +V L+ G    G+L S+D + N+ L  T E I  G   G +  G  ++R  NV+ + 
Sbjct: 16 KKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPRGIFVVRGENVVLLG 75

Query: 74 GVEEEEE 80
           ++ E+E
Sbjct: 76 EIDLEKE 82


>gi|14210514 piggyBac transposable element derived 1 [Homo sapiens]
          Length = 809

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 14  LTGKPVMVKLK-W-GMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHL 59
           L GKP+ +  K W G   +GYLV  + Y        +E  D  L G+L
Sbjct: 559 LNGKPIRIGYKIWCGTTTQGYLVWFEPYQEESTMKVDEDPDLGLGGNL 606


>gi|14249632 LSM10, U7 small nuclear RNA associated [Homo sapiens]
          Length = 123

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 17/62 (27%), Positives = 28/62 (45%)

Query: 11 LNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNNVL 70
          L GL G+   V L+      G + +VD +MN++LA             L ++ +   NV 
Sbjct: 21 LQGLQGRVTTVDLRDESVAHGRIDNVDAFMNIRLAKVTYTDRWGHQVKLDDLFVTGRNVR 80

Query: 71 YI 72
          Y+
Sbjct: 81 YV 82


>gi|13027640 aminoadipate-semialdehyde synthase [Homo sapiens]
          Length = 926

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 9/26 (34%), Positives = 18/26 (69%)

Query: 23  LKWGMEYKGYLVSVDGYMNMQLANTE 48
           L+  + YKGY+ +++G++ + L N E
Sbjct: 721 LRGTLRYKGYMKALNGFVKLGLINRE 746


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.315    0.139    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,396,480
Number of Sequences: 37866
Number of extensions: 122676
Number of successful extensions: 205
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 200
Number of HSP's gapped (non-prelim): 12
length of query: 86
length of database: 18,247,518
effective HSP length: 58
effective length of query: 28
effective length of database: 16,051,290
effective search space: 449436120
effective search space used: 449436120
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.