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Search of human proteins with 4506375
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4506375 RAB7, member RAS oncogene family-like 1 isoform 1
[Homo sapiens]
(203 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|208609962 RAB7, member RAS oncogene family-like 1 isoform 1 [... 414 e-116
gi|4506375 RAB7, member RAS oncogene family-like 1 isoform 1 [Ho... 414 e-116
gi|208609964 RAB7, member RAS oncogene family-like 1 isoform 2 [... 352 9e-98
gi|208609966 RAB7, member RAS oncogene family-like 1 isoform 3 [... 272 1e-73
gi|5803133 RAB32, member RAS oncogene family [Homo sapiens] 217 6e-57
gi|11641237 RAB38 [Homo sapiens] 213 7e-56
gi|4506363 RAB13, member RAS oncogene family [Homo sapiens] 130 8e-31
gi|169204777 PREDICTED: similar to RAB13, member RAS oncogene fa... 129 2e-30
gi|169205558 PREDICTED: similar to hCG24991 [Homo sapiens] 129 2e-30
gi|169204174 PREDICTED: similar to hCG24991 [Homo sapiens] 129 2e-30
gi|4759012 RAB9A, member RAS oncogene family [Homo sapiens] 127 5e-30
gi|33695095 ras-related GTP-binding protein RAB10 [Homo sapiens] 124 4e-29
gi|5803135 RAB35, member RAS oncogene family [Homo sapiens] 123 9e-29
gi|50234889 RAB43 protein [Homo sapiens] 123 1e-28
gi|106507164 RAB12, member RAS oncogene family [Homo sapiens] 123 1e-28
gi|4758988 RAB1A, member RAS oncogene family isoform 1 [Homo sap... 122 2e-28
gi|34485714 Ras-related protein Rab-23 [Homo sapiens] 122 3e-28
gi|7706563 RAB8B, member RAS oncogene family [Homo sapiens] 122 3e-28
gi|34485716 Ras-related protein Rab-23 [Homo sapiens] 122 3e-28
gi|34147513 RAB7, member RAS oncogene family [Homo sapiens] 121 5e-28
gi|16933567 mel transforming oncogene [Homo sapiens] 120 6e-28
gi|4506367 RAB3A, member RAS oncogene family [Homo sapiens] 119 1e-27
gi|19923985 RAB3C, member RAS oncogene family [Homo sapiens] 118 3e-27
gi|4758984 Ras-related protein Rab-11A [Homo sapiens] 118 4e-27
gi|4759000 RAB3D, member RAS oncogene family [Homo sapiens] 117 9e-27
gi|13569962 RAB1B, member RAS oncogene family [Homo sapiens] 116 1e-26
gi|190358517 RAB11B, member RAS oncogene family [Homo sapiens] 115 3e-26
gi|19923231 RAB6A, member RAS oncogene family isoform a [Homo sa... 115 3e-26
gi|239915976 RAB19, member RAS oncogene family [Homo sapiens] 114 4e-26
gi|38679888 RAB6A, member RAS oncogene family isoform b [Homo sa... 114 7e-26
>gi|208609962 RAB7, member RAS oncogene family-like 1 isoform 1
[Homo sapiens]
Length = 203
Score = 414 bits (1065), Expect = e-116
Identities = 203/203 (100%), Positives = 203/203 (100%)
Query: 1 MGSRDHLFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDYEIVRLQ 60
MGSRDHLFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDYEIVRLQ
Sbjct: 1 MGSRDHLFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDYEIVRLQ 60
Query: 61 LWDIAGQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPC 120
LWDIAGQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPC
Sbjct: 61 LWDIAGQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPC 120
Query: 121 LLLANKCDLSPWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMMRNSTED 180
LLLANKCDLSPWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMMRNSTED
Sbjct: 121 LLLANKCDLSPWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMMRNSTED 180
Query: 181 IMSLSTQGDYINLQTKSSSWSCC 203
IMSLSTQGDYINLQTKSSSWSCC
Sbjct: 181 IMSLSTQGDYINLQTKSSSWSCC 203
>gi|4506375 RAB7, member RAS oncogene family-like 1 isoform 1 [Homo
sapiens]
Length = 203
Score = 414 bits (1065), Expect = e-116
Identities = 203/203 (100%), Positives = 203/203 (100%)
Query: 1 MGSRDHLFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDYEIVRLQ 60
MGSRDHLFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDYEIVRLQ
Sbjct: 1 MGSRDHLFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDYEIVRLQ 60
Query: 61 LWDIAGQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPC 120
LWDIAGQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPC
Sbjct: 61 LWDIAGQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPC 120
Query: 121 LLLANKCDLSPWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMMRNSTED 180
LLLANKCDLSPWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMMRNSTED
Sbjct: 121 LLLANKCDLSPWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMMRNSTED 180
Query: 181 IMSLSTQGDYINLQTKSSSWSCC 203
IMSLSTQGDYINLQTKSSSWSCC
Sbjct: 181 IMSLSTQGDYINLQTKSSSWSCC 203
>gi|208609964 RAB7, member RAS oncogene family-like 1 isoform 2
[Homo sapiens]
Length = 179
Score = 352 bits (904), Expect = 9e-98
Identities = 179/203 (88%), Positives = 179/203 (88%), Gaps = 24/203 (11%)
Query: 1 MGSRDHLFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDYEIVRLQ 60
MGSRDHLFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVG
Sbjct: 1 MGSRDHLFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVG------------------- 41
Query: 61 LWDIAGQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPC 120
GQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPC
Sbjct: 42 -----GQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPC 96
Query: 121 LLLANKCDLSPWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMMRNSTED 180
LLLANKCDLSPWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMMRNSTED
Sbjct: 97 LLLANKCDLSPWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMMRNSTED 156
Query: 181 IMSLSTQGDYINLQTKSSSWSCC 203
IMSLSTQGDYINLQTKSSSWSCC
Sbjct: 157 IMSLSTQGDYINLQTKSSSWSCC 179
>gi|208609966 RAB7, member RAS oncogene family-like 1 isoform 3
[Homo sapiens]
Length = 131
Score = 272 bits (696), Expect = 1e-73
Identities = 131/131 (100%), Positives = 131/131 (100%)
Query: 73 MTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPCLLLANKCDLSPW 132
MTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPCLLLANKCDLSPW
Sbjct: 1 MTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPCLLLANKCDLSPW 60
Query: 133 AVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMMRNSTEDIMSLSTQGDYIN 192
AVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMMRNSTEDIMSLSTQGDYIN
Sbjct: 61 AVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMMRNSTEDIMSLSTQGDYIN 120
Query: 193 LQTKSSSWSCC 203
LQTKSSSWSCC
Sbjct: 121 LQTKSSSWSCC 131
>gi|5803133 RAB32, member RAS oncogene family [Homo sapiens]
Length = 225
Score = 217 bits (552), Expect = 6e-57
Identities = 104/208 (50%), Positives = 144/208 (69%), Gaps = 10/208 (4%)
Query: 3 SRDHLFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDYEIVRLQLW 62
+R+HLFKVLV+G+ VGKTS+++RY FS+HY++T+GVDFALKVL W +VRLQLW
Sbjct: 21 TREHLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLNWDSRTLVRLQLW 80
Query: 63 DIAGQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPCLL 122
DIAGQERF +MTR+YY++A ++FD++ ++TF +WK DLDSK+ LPNG P+P +L
Sbjct: 81 DIAGQERFGNMTRVYYKEAVGAFVVFDISRSSTFEAVLKWKSDLDSKVHLPNGSPIPAVL 140
Query: 123 LANKCDLS-PWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMM------R 175
LANKCD + + S Q+D+F KE+GF GW ETS K+N NI EA R L+EK++
Sbjct: 141 LANKCDQNKDSSQSPSQVDQFCKEHGFAGWFETSAKDNINIEEAARFLVEKILVNHQSFP 200
Query: 176 NSTEDIMSLSTQGDYINLQTKSSSWSCC 203
N D+ + + + + KS CC
Sbjct: 201 NEENDVDKIKLDQETLRAENKS---QCC 225
>gi|11641237 RAB38 [Homo sapiens]
Length = 211
Score = 213 bits (543), Expect = 7e-56
Identities = 105/202 (51%), Positives = 142/202 (70%), Gaps = 4/202 (1%)
Query: 4 RDHLFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDYEIVRLQLWD 63
++HL+K+LV+GD VGKTS+++RY +FS HY++T+GVDFALKVL W +VRLQLWD
Sbjct: 6 KEHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDPETVVRLQLWD 65
Query: 64 IAGQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPCLLL 123
IAGQERF +MTR+YYR+A I+FDVT TF +WK DLDSKL+LPNG+PV +LL
Sbjct: 66 IAGQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVAKWKNDLDSKLSLPNGKPVSVVLL 125
Query: 124 ANKCDLSPWAVSRD--QIDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMMRNSTEDI 181
ANKCD + + ++D+F KE+GF GW ETS KEN NI+EA R L++ ++ N D+
Sbjct: 126 ANKCDQGKDVLMNNGLKMDQFCKEHGFVGWFETSAKENINIDEASRCLVKHILANEC-DL 184
Query: 182 MSLSTQGDYINLQTKSSSWSCC 203
M S + D + S+ + C
Sbjct: 185 ME-SIEPDVVKPHLTSTKVASC 205
>gi|4506363 RAB13, member RAS oncogene family [Homo sapiens]
Length = 203
Score = 130 bits (327), Expect = 8e-31
Identities = 66/174 (37%), Positives = 110/174 (63%), Gaps = 7/174 (4%)
Query: 5 DHLFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDYEIVRLQLWDI 64
DHLFK+L++GD+ VGKT L+ R+++D+F+ Y ST+G+DF ++ + +I +LQ+WD
Sbjct: 6 DHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKI-KLQVWDT 64
Query: 65 AGQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPCLLLA 124
AGQERF ++T YYR A ++++D+T+ +F N Q W + + + V LLL
Sbjct: 65 AGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENAS----AGVERLLLG 120
Query: 125 NKCDL-SPWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMMRNS 177
NKCD+ + V ++Q D+ ++E+G + ETS K + N++EA L ++ S
Sbjct: 121 NKCDMEAKRKVQKEQADKLAREHGIR-FFETSAKSSMNVDEAFSSLARDILLKS 173
>gi|169204777 PREDICTED: similar to RAB13, member RAS oncogene
family [Homo sapiens]
Length = 327
Score = 129 bits (323), Expect = 2e-30
Identities = 66/174 (37%), Positives = 109/174 (62%), Gaps = 7/174 (4%)
Query: 5 DHLFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDYEIVRLQLWDI 64
DHLFK+L++GD+ VGKT L+ R+++D+F+ Y ST+G+DF ++ + +I +LQ+WD
Sbjct: 130 DHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKI-KLQVWDT 188
Query: 65 AGQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPCLLLA 124
AGQERF ++T YYR A ++ +D+T+ +F N Q W + + + V LLL
Sbjct: 189 AGQERFKTITTAYYRGAMGIILAYDITDEKSFENIQNWMKSIMENAS----AGVEHLLLG 244
Query: 125 NKCDL-SPWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMMRNS 177
NKCD+ + V ++Q D+ ++E+G + ETS K + N++EA L ++ S
Sbjct: 245 NKCDMEAKRKVQKEQADKLAREHGIR-FFETSAKSSMNVDEAFSSLARDILLKS 297
>gi|169205558 PREDICTED: similar to hCG24991 [Homo sapiens]
Length = 327
Score = 129 bits (323), Expect = 2e-30
Identities = 66/174 (37%), Positives = 109/174 (62%), Gaps = 7/174 (4%)
Query: 5 DHLFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDYEIVRLQLWDI 64
DHLFK+L++GD+ VGKT L+ R+++D+F+ Y ST+G+DF ++ + +I +LQ+WD
Sbjct: 130 DHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKI-KLQVWDT 188
Query: 65 AGQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPCLLLA 124
AGQERF ++T YYR A ++ +D+T+ +F N Q W + + + V LLL
Sbjct: 189 AGQERFKTITTAYYRGAMGIILAYDITDEKSFENIQNWMKSIMENAS----AGVEHLLLG 244
Query: 125 NKCDL-SPWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMMRNS 177
NKCD+ + V ++Q D+ ++E+G + ETS K + N++EA L ++ S
Sbjct: 245 NKCDMEAKRKVQKEQADKLAREHGIR-FFETSAKSSMNVDEAFSSLARDILLKS 297
>gi|169204174 PREDICTED: similar to hCG24991 [Homo sapiens]
Length = 327
Score = 129 bits (323), Expect = 2e-30
Identities = 66/174 (37%), Positives = 109/174 (62%), Gaps = 7/174 (4%)
Query: 5 DHLFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDYEIVRLQLWDI 64
DHLFK+L++GD+ VGKT L+ R+++D+F+ Y ST+G+DF ++ + +I +LQ+WD
Sbjct: 130 DHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKI-KLQVWDT 188
Query: 65 AGQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPCLLLA 124
AGQERF ++T YYR A ++ +D+T+ +F N Q W + + + V LLL
Sbjct: 189 AGQERFKTITTAYYRGAMGIILAYDITDEKSFENIQNWMKSIMENAS----AGVEHLLLG 244
Query: 125 NKCDL-SPWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMMRNS 177
NKCD+ + V ++Q D+ ++E+G + ETS K + N++EA L ++ S
Sbjct: 245 NKCDMEAKRKVQKEQADKLAREHGIR-FFETSAKSSMNVDEAFSSLARDILLKS 297
>gi|4759012 RAB9A, member RAS oncogene family [Homo sapiens]
Length = 201
Score = 127 bits (320), Expect = 5e-30
Identities = 71/204 (34%), Positives = 111/204 (54%), Gaps = 4/204 (1%)
Query: 1 MGSRDHLFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDYEIVRLQ 60
M + LFKV+++GD VGK+SL+ RY + F T+GV+F K L+ D V +Q
Sbjct: 1 MAGKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLE-VDGHFVTMQ 59
Query: 61 LWDIAGQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPC 120
+WD AGQERF S+ +YR + C++ F V ++ +F N WK++ + E P
Sbjct: 60 IWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPF 119
Query: 121 LLLANKCDLSPWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMMRNSTED 180
++L NK D+S VS ++ + ++NG + ETS K+ N+ A + +++ +TED
Sbjct: 120 VILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVL--ATED 177
Query: 181 IMSLSTQGDYINLQTK-SSSWSCC 203
Q D +NL K S SCC
Sbjct: 178 RSDHLIQTDTVNLHRKPKPSSSCC 201
>gi|33695095 ras-related GTP-binding protein RAB10 [Homo sapiens]
Length = 200
Score = 124 bits (312), Expect = 4e-29
Identities = 66/174 (37%), Positives = 109/174 (62%), Gaps = 7/174 (4%)
Query: 5 DHLFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDYEIVRLQLWDI 64
D LFK+L++GD+ VGKT ++ R+S D+F+ + ST+G+DF +K ++ +I +LQ+WD
Sbjct: 7 DLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKI-KLQIWDT 65
Query: 65 AGQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPCLLLA 124
AGQERF ++T YYR A ++++D+TN +F N +W +++D E V +LL
Sbjct: 66 AGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHA----NEDVERMLLG 121
Query: 125 NKCDL-SPWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMMRNS 177
NKCD+ V + + + ++E+G + ETS K N NI +A L E ++R +
Sbjct: 122 NKCDMDDKRVVPKGKGGQIAREHGIR-FFETSAKANINIEKAFLTLAEDILRKT 174
>gi|5803135 RAB35, member RAS oncogene family [Homo sapiens]
Length = 201
Score = 123 bits (309), Expect = 9e-29
Identities = 73/204 (35%), Positives = 121/204 (59%), Gaps = 13/204 (6%)
Query: 5 DHLFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDYEIVRLQLWDI 64
DHLFK+L++GD+ VGK+SL+ R++ ++FS Y +T+GVDF ++ ++ + E V+LQ+WD
Sbjct: 6 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEING-EKVKLQIWDT 64
Query: 65 AGQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPCLLLA 124
AGQERF ++T YYR ++++DVT+A +F N +RW +++ N + V +L+
Sbjct: 65 AGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQ-----NCDDVCRILVG 119
Query: 125 NK-CDLSPWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMMRNSTEDI-- 181
NK D V + +F+ + G + ETS KEN N+ E + E ++R +++
Sbjct: 120 NKNDDPERKVVETEDAYKFAGQMGIQLF-ETSAKENVNVEEMFNCITELVLRAKKDNLAK 178
Query: 182 MSLSTQGDYINLQTKSSSWS--CC 203
Q D + L TK+S CC
Sbjct: 179 QQQQQQNDVVKL-TKNSKRKKRCC 201
>gi|50234889 RAB43 protein [Homo sapiens]
Length = 212
Score = 123 bits (308), Expect = 1e-28
Identities = 72/200 (36%), Positives = 112/200 (56%), Gaps = 7/200 (3%)
Query: 5 DHLFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDYEIVRLQLWDI 64
D LFK+++VGDA+VGKT +VQR+ +FS+ ST+GVDF +K L+ + V+LQ+WD
Sbjct: 16 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQG-KRVKLQIWDT 74
Query: 65 AGQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPCLLLA 124
AGQERF ++T+ YYR A+ ++ +D+T ++F + W +D+ G + LL+
Sbjct: 75 AGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYA----GSNIVQLLIG 130
Query: 125 NKCDLSPW-AVSRDQIDRFSKENGFTGWTETSVKENKNINEA-MRVLIEKMMRNSTEDIM 182
NK DLS VS + ++ ETS K++ N+ EA +RV E +MR+
Sbjct: 131 NKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMRHGGPLFS 190
Query: 183 SLSTQGDYINLQTKSSSWSC 202
S +N + W C
Sbjct: 191 EKSPDHIQLNSKDIGEGWGC 210
>gi|106507164 RAB12, member RAS oncogene family [Homo sapiens]
Length = 244
Score = 123 bits (308), Expect = 1e-28
Identities = 65/191 (34%), Positives = 112/191 (58%), Gaps = 6/191 (3%)
Query: 5 DHLFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDYEIVRLQLWDI 64
D +V+++G VGKTSL++R++ D+F + KSTVGVDF +K ++ +I RLQ+WD
Sbjct: 40 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKI-RLQIWDT 98
Query: 65 AGQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPCLLLA 124
AGQERF S+T YYR A ++++D+T TF + +W + +D + E LL+
Sbjct: 99 AGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYAS----EDAELLLVG 154
Query: 125 NKCDL-SPWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMMRNSTEDIMS 183
NK D + ++R Q ++F+++ + E S K+N N++E L++ +++ DI+
Sbjct: 155 NKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKMPLDILR 214
Query: 184 LSTQGDYINLQ 194
++LQ
Sbjct: 215 NELSNSILSLQ 225
>gi|4758988 RAB1A, member RAS oncogene family isoform 1 [Homo
sapiens]
Length = 205
Score = 122 bits (307), Expect = 2e-28
Identities = 66/203 (32%), Positives = 118/203 (58%), Gaps = 10/203 (4%)
Query: 5 DHLFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDYEIVRLQLWDI 64
D+LFK+L++GD+ VGK+ L+ R++ D++++ Y ST+GVDF ++ ++ D + ++LQ+WD
Sbjct: 9 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL-DGKTIKLQIWDT 67
Query: 65 AGQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPCLLLA 124
AGQERF ++T YYR A ++++DVT+ +F+N ++W Q++D + E V LL+
Sbjct: 68 AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLVG 123
Query: 125 NKCDL-SPWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMMRNSTEDIMS 183
NKCDL + V F+ G + ETS K N+ ++ + ++ + +
Sbjct: 124 NKCDLTTKKVVDYTTAKEFADSLGIP-FLETSAKNATNVEQSFMTMAAEIKKRMGPGATA 182
Query: 184 LSTQGDYINLQT---KSSSWSCC 203
+ + +Q+ K S CC
Sbjct: 183 GGAEKSNVKIQSTPVKQSGGGCC 205
>gi|34485714 Ras-related protein Rab-23 [Homo sapiens]
Length = 237
Score = 122 bits (305), Expect = 3e-28
Identities = 68/174 (39%), Positives = 106/174 (60%), Gaps = 8/174 (4%)
Query: 9 KVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDYEIVRLQLWDIAGQE 68
K++VVG+ AVGK+S++QRY + F+K YK T+GVDF + +Q +D E VRL LWD AGQE
Sbjct: 11 KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVND-EDVRLMLWDTAGQE 69
Query: 69 RFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPCLLLANKCD 128
F ++T+ YYR A ACV++F T+ +F W++ K+ G+ +P +L+ NK D
Sbjct: 70 EFDAITKAYYRGAQACVLVFSTTDRESFEAVSSWRE----KVVAEVGD-IPTVLVQNKID 124
Query: 129 -LSPWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMMRNSTEDI 181
L + ++ + +K + TSVKE+ N+NE + L EK ++ + I
Sbjct: 125 LLDDSCIKNEEAEALAKRLKLR-FYRTSVKEDLNVNEVFKYLAEKYLQKLKQQI 177
>gi|7706563 RAB8B, member RAS oncogene family [Homo sapiens]
Length = 207
Score = 122 bits (305), Expect = 3e-28
Identities = 61/171 (35%), Positives = 111/171 (64%), Gaps = 7/171 (4%)
Query: 5 DHLFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDYEIVRLQLWDI 64
D+LFK+L++GD+ VGKT L+ R+S+D+F+ + ST+G+DF ++ ++ D + ++LQ+WD
Sbjct: 6 DYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIEL-DGKKIKLQIWDT 64
Query: 65 AGQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPCLLLA 124
AGQERF ++T YYR A ++++D+TN +F N + W ++++ + V ++L
Sbjct: 65 AGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHAS----SDVERMILG 120
Query: 125 NKCDLS-PWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMM 174
NKCD++ VS+++ ++ + + G + ETS K + N+ EA L +M
Sbjct: 121 NKCDMNDKRQVSKERGEKLAIDYGIK-FLETSAKSSANVEEAFFTLARDIM 170
>gi|34485716 Ras-related protein Rab-23 [Homo sapiens]
Length = 237
Score = 122 bits (305), Expect = 3e-28
Identities = 68/174 (39%), Positives = 106/174 (60%), Gaps = 8/174 (4%)
Query: 9 KVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDYEIVRLQLWDIAGQE 68
K++VVG+ AVGK+S++QRY + F+K YK T+GVDF + +Q +D E VRL LWD AGQE
Sbjct: 11 KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVND-EDVRLMLWDTAGQE 69
Query: 69 RFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPCLLLANKCD 128
F ++T+ YYR A ACV++F T+ +F W++ K+ G+ +P +L+ NK D
Sbjct: 70 EFDAITKAYYRGAQACVLVFSTTDRESFEAVSSWRE----KVVAEVGD-IPTVLVQNKID 124
Query: 129 -LSPWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMMRNSTEDI 181
L + ++ + +K + TSVKE+ N+NE + L EK ++ + I
Sbjct: 125 LLDDSCIKNEEAEALAKRLKLR-FYRTSVKEDLNVNEVFKYLAEKYLQKLKQQI 177
>gi|34147513 RAB7, member RAS oncogene family [Homo sapiens]
Length = 207
Score = 121 bits (303), Expect = 5e-28
Identities = 67/175 (38%), Positives = 98/175 (56%), Gaps = 5/175 (2%)
Query: 7 LFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDYEIVRLQLWDIAG 66
L KV+++GD+ VGKTSL+ +Y FS YK+T+G DF K + D +V +Q+WD AG
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDD-RLVTMQIWDTAG 66
Query: 67 QERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPCLLLANK 126
QERF S+ +YR A CV++FDVT TF W+ + + + + E P ++L NK
Sbjct: 67 QERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNK 126
Query: 127 CDLS--PWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMMRNSTE 179
DL A R Q +SK N + ETS KE N+ +A + + ++ TE
Sbjct: 127 IDLENRQVATKRAQAWCYSKNN--IPYFETSAKEAINVEQAFQTIARNALKQETE 179
>gi|16933567 mel transforming oncogene [Homo sapiens]
Length = 207
Score = 120 bits (302), Expect = 6e-28
Identities = 67/205 (32%), Positives = 121/205 (59%), Gaps = 12/205 (5%)
Query: 5 DHLFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDYEIVRLQLWDI 64
D+LFK+L++GD+ VGKT ++ R+S+D+F+ + ST+G+DF ++ ++ D + ++LQ+WD
Sbjct: 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIEL-DGKRIKLQIWDT 64
Query: 65 AGQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPCLLLA 124
AGQERF ++T YYR A ++++D+TN +F N + W ++++ + V ++L
Sbjct: 65 AGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHAS----ADVEKMILG 120
Query: 125 NKCDLS-PWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMMRNSTEDIMS 183
NKCD++ VS+++ ++ + + G + ETS K N N+ A L + + +
Sbjct: 121 NKCDVNDKRQVSKERGEKLALDYGIK-FMETSAKANINVENAFFTLARDIKAKMDKKLEG 179
Query: 184 LSTQGDYINL-----QTKSSSWSCC 203
S QG + Q K SS+ C
Sbjct: 180 NSPQGSNQGVKITPDQQKRSSFFRC 204
>gi|4506367 RAB3A, member RAS oncogene family [Homo sapiens]
Length = 220
Score = 119 bits (299), Expect = 1e-27
Identities = 60/177 (33%), Positives = 106/177 (59%), Gaps = 5/177 (2%)
Query: 5 DHLFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDYEIVRLQLWDI 64
D++FK+L++G+++VGKTS + RY+ DSF+ + STVG+DF +K + +D I +LQ+WD
Sbjct: 20 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRI-KLQIWDT 78
Query: 65 AGQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPCLLLA 124
AGQER+ ++T YYR A ++M+D+TN +F+ Q W +++ + + LL+
Sbjct: 79 AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDW----STQIKTYSWDNAQVLLVG 134
Query: 125 NKCDLSPWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMMRNSTEDI 181
NKCD+ V + R ++ + E S K+N N+ + L++ + +E +
Sbjct: 135 NKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESL 191
>gi|19923985 RAB3C, member RAS oncogene family [Homo sapiens]
Length = 227
Score = 118 bits (296), Expect = 3e-27
Identities = 59/178 (33%), Positives = 111/178 (62%), Gaps = 7/178 (3%)
Query: 5 DHLFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDYEIVRLQLWDI 64
D++FK+L++G+++VGKTS + RY+ DSF+ + STVG+DF +K + + + + ++LQ+WD
Sbjct: 28 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTV-FKNEKRIKLQIWDT 86
Query: 65 AGQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPCLLLA 124
AGQER+ ++T YYR A ++M+D+TN +F+ Q W +++ + + +L+
Sbjct: 87 AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDW----STQIKTYSWDNAQVILVG 142
Query: 125 NKCDL-SPWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMMRNSTEDI 181
NKCD+ +S ++ ++ GF + ETS K+N N+ + L++ + +E +
Sbjct: 143 NKCDMEDERVISTERGQHLGEQLGFE-FFETSAKDNINVKQTFERLVDIICDKMSESL 199
>gi|4758984 Ras-related protein Rab-11A [Homo sapiens]
Length = 216
Score = 118 bits (295), Expect = 4e-27
Identities = 66/198 (33%), Positives = 121/198 (61%), Gaps = 19/198 (9%)
Query: 1 MGSRD----HLFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDYEI 56
MG+RD +LFKV+++GD+ VGK++L+ R++++ F+ KST+GV+FA + +Q D +
Sbjct: 1 MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQ-VDGKT 59
Query: 57 VRLQLWDIAGQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDL----DSKLTL 112
++ Q+WD AGQER+ ++T YYR A ++++D+ T+ N +RW ++L DS + +
Sbjct: 60 IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVI 119
Query: 113 PNGEPVPCLLLANKCDLSPW-AVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLIE 171
+L+ NK DL AV D+ F+++NG + + ETS ++ N+ A + ++
Sbjct: 120 --------MLVGNKSDLRHLRAVPTDEARAFAEKNGLS-FIETSALDSTNVEAAFQTILT 170
Query: 172 KMMRNSTEDIMSLSTQGD 189
++ R ++ MS + D
Sbjct: 171 EIYRIVSQKQMSDRREND 188
>gi|4759000 RAB3D, member RAS oncogene family [Homo sapiens]
Length = 219
Score = 117 bits (292), Expect = 9e-27
Identities = 64/185 (34%), Positives = 108/185 (58%), Gaps = 7/185 (3%)
Query: 5 DHLFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDYEIVRLQLWDI 64
D++FK+L++G+++VGKTS + RY+ DSF+ + STVG+DF +K + D I +LQ+WD
Sbjct: 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRI-KLQIWDT 78
Query: 65 AGQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPCLLLA 124
AGQER+ ++T YYR A ++M+D+ N +F+ Q W +++ + + +L+
Sbjct: 79 AGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWA----TQIKTYSWDNAQVILVG 134
Query: 125 NKCDL-SPWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMMRNSTEDIMS 183
NKCDL V + R + + GF + E S KEN N+ + L++ + E +
Sbjct: 135 NKCDLEDERVVPAEDGRRLADDLGFE-FFEASAKENINVKQVFERLVDVICEKMNESLEP 193
Query: 184 LSTQG 188
S+ G
Sbjct: 194 SSSSG 198
>gi|13569962 RAB1B, member RAS oncogene family [Homo sapiens]
Length = 201
Score = 116 bits (290), Expect = 1e-26
Identities = 58/171 (33%), Positives = 108/171 (63%), Gaps = 5/171 (2%)
Query: 5 DHLFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDYEIVRLQLWDI 64
D+LFK+L++GD+ VGK+ L+ R++ D++++ Y ST+GVDF ++ ++ D + ++LQ+WD
Sbjct: 6 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL-DGKTIKLQIWDT 64
Query: 65 AGQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPCLLLA 124
AGQERF ++T YYR A ++++DVT+ +++N ++W Q++D + E V LL+
Sbjct: 65 AGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYAS----ENVNKLLVG 120
Query: 125 NKCDLSPWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMMR 175
NK DL+ V + + ++ + ETS K N+ +A + ++ +
Sbjct: 121 NKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKK 171
>gi|190358517 RAB11B, member RAS oncogene family [Homo sapiens]
Length = 218
Score = 115 bits (288), Expect = 3e-26
Identities = 63/184 (34%), Positives = 115/184 (62%), Gaps = 19/184 (10%)
Query: 1 MGSRD----HLFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDYEI 56
MG+RD +LFKV+++GD+ VGK++L+ R++++ F+ KST+GV+FA + +Q D +
Sbjct: 1 MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQ-VDGKT 59
Query: 57 VRLQLWDIAGQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDL----DSKLTL 112
++ Q+WD AGQER+ ++T YYR A ++++D+ T+ N +RW ++L DS + +
Sbjct: 60 IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVI 119
Query: 113 PNGEPVPCLLLANKCDLSPW-AVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLIE 171
+L+ NK DL AV D+ F+++N + + ETS ++ N+ EA + ++
Sbjct: 120 --------MLVGNKSDLRHLRAVPTDEARAFAEKNNLS-FIETSALDSTNVEEAFKNILT 170
Query: 172 KMMR 175
++ R
Sbjct: 171 EIYR 174
>gi|19923231 RAB6A, member RAS oncogene family isoform a [Homo
sapiens]
Length = 208
Score = 115 bits (287), Expect = 3e-26
Identities = 66/187 (35%), Positives = 108/187 (57%), Gaps = 13/187 (6%)
Query: 8 FKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDYEIVRLQLWDIAGQ 67
FK++ +G+ +VGKTSL+ R+ DSF Y++T+G+DF K + D +RLQLWD AGQ
Sbjct: 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLED-RTIRLQLWDTAGQ 72
Query: 68 ERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPCLLLANKC 127
ERF S+ Y RD++A V+++D+TN +F + +W D+ ++ G V +L+ NK
Sbjct: 73 ERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTE----RGSDVIIMLVGNKT 128
Query: 128 DLS-PWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVL------IEKMMRNSTED 180
DL+ VS ++ +R +KE + ETS K N+ + R + +E S ED
Sbjct: 129 DLADKRQVSIEEGERKAKELNVM-FIETSAKAGYNVKQLFRRVAAALPGMESTQDRSRED 187
Query: 181 IMSLSTQ 187
++ + +
Sbjct: 188 MIDIKLE 194
>gi|239915976 RAB19, member RAS oncogene family [Homo sapiens]
Length = 217
Score = 114 bits (286), Expect = 4e-26
Identities = 63/177 (35%), Positives = 107/177 (60%), Gaps = 11/177 (6%)
Query: 5 DHLFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDYEIVRLQLWDI 64
D+LFK++++GD+ VGKT +VQ + +++ ++T+GVDF ++ L D + V++Q+WD
Sbjct: 15 DYLFKIILIGDSNVGKTCVVQHFKSGVYTETQQNTIGVDFTVRSLD-IDGKKVKMQVWDT 73
Query: 65 AGQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPCLLLA 124
AGQERF ++T+ YYR A A +I +D+T +TF + W +++ V +L+
Sbjct: 74 AGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESIPHWIHEIEKY----GAANVVIMLIG 129
Query: 125 NKCDLSPWA---VSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMM-RNS 177
NKCDL W V + +++ G ETS KE+KNI E ++ ++++ RNS
Sbjct: 130 NKCDL--WEKRHVLFEDACTLAEKYGLLAVLETSAKESKNIEEVFVLMAKELIARNS 184
>gi|38679888 RAB6A, member RAS oncogene family isoform b [Homo
sapiens]
Length = 208
Score = 114 bits (284), Expect = 7e-26
Identities = 66/187 (35%), Positives = 107/187 (57%), Gaps = 13/187 (6%)
Query: 8 FKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDYEIVRLQLWDIAGQ 67
FK++ +G+ +VGKTSL+ R+ DSF Y++T+G+DF K + D VRLQLWD AGQ
Sbjct: 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLED-RTVRLQLWDTAGQ 72
Query: 68 ERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPCLLLANKC 127
ERF S+ Y RD++ V+++D+TN +F + +W D+ ++ G V +L+ NK
Sbjct: 73 ERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTE----RGSDVIIMLVGNKT 128
Query: 128 DLS-PWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVL------IEKMMRNSTED 180
DL+ VS ++ +R +KE + ETS K N+ + R + +E S ED
Sbjct: 129 DLADKRQVSIEEGERKAKELNVM-FIETSAKAGYNVKQLFRRVAAALPGMESTQDRSRED 187
Query: 181 IMSLSTQ 187
++ + +
Sbjct: 188 MIDIKLE 194
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.130 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,819,522
Number of Sequences: 37866
Number of extensions: 258771
Number of successful extensions: 1037
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 53
Number of HSP's that attempted gapping in prelim test: 656
Number of HSP's gapped (non-prelim): 248
length of query: 203
length of database: 18,247,518
effective HSP length: 97
effective length of query: 106
effective length of database: 14,574,516
effective search space: 1544898696
effective search space used: 1544898696
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.