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Search of human proteins with 4506163
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4506163 presenilin 1 isoform I-467 [Homo sapiens]
(467 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4506163 presenilin 1 isoform I-467 [Homo sapiens] 926 0.0
gi|195947397 presenilin 1 isoform I-463 [Homo sapiens] 913 0.0
gi|156105679 presenilin 2 isoform 1 [Homo sapiens] 558 e-159
gi|156105681 presenilin 2 isoform 2 [Homo sapiens] 556 e-158
gi|68223315 CD47 antigen isoform 3 precursor [Homo sapiens] 42 0.002
gi|38683836 CD47 antigen isoform 2 precursor [Homo sapiens] 42 0.002
gi|4502673 CD47 antigen isoform 1 precursor [Homo sapiens] 42 0.002
gi|4826934 protein phosphatase 4, regulatory subunit 1 isoform b... 34 0.32
gi|108936953 protein phosphatase 4, regulatory subunit 1 isoform... 34 0.32
gi|30581111 minor histocompatibility antigen 13 isoform 3 [Homo ... 32 1.2
gi|30581109 minor histocompatibility antigen 13 isoform 2 [Homo ... 32 1.2
gi|23308607 minor histocompatibility antigen 13 isoform 1 [Homo ... 32 1.2
gi|118582255 ATP-binding cassette, sub-family C, member 8 [Homo ... 32 1.6
gi|40789233 coenzyme Q9 homolog [Homo sapiens] 31 2.7
gi|4502805 chromogranin A precursor [Homo sapiens] 31 2.7
gi|189409130 zinc finger E-box binding homeobox 1 isoform a [Hom... 31 2.7
gi|189409128 zinc finger E-box binding homeobox 1 isoform b [Hom... 31 2.7
gi|197313748 SET domain containing 2 [Homo sapiens] 31 2.7
gi|150421684 ATPase, class VI, type 11A isoform a [Homo sapiens] 31 2.7
gi|21314755 signal peptide peptidase-like 2A [Homo sapiens] 31 2.7
gi|18034692 CDW92 antigen [Homo sapiens] 31 2.7
gi|148228819 G protein-coupled receptor 89A isoform 1 [Homo sapi... 30 4.7
gi|7706704 G protein-coupled receptor 89B [Homo sapiens] 30 4.7
gi|94721321 coiled-coil domain containing 11 [Homo sapiens] 30 4.7
gi|156416026 zinc finger protein 219 [Homo sapiens] 30 4.7
gi|156415998 zinc finger protein 219 [Homo sapiens] 30 4.7
gi|52218862 olfactory receptor, family 13, subfamily J, member 1... 30 4.7
gi|156415996 zinc finger protein 219 [Homo sapiens] 30 4.7
gi|57977305 G protein-coupled receptor 151 [Homo sapiens] 30 4.7
gi|41281808 harmonin isoform b3 [Homo sapiens] 30 6.1
>gi|4506163 presenilin 1 isoform I-467 [Homo sapiens]
Length = 467
Score = 926 bits (2393), Expect = 0.0
Identities = 467/467 (100%), Positives = 467/467 (100%)
Query: 1 MTELPAPLSYFQNAQMSEDNHLSNTVRSQNDNRERQEHNDRRSLGHPEPLSNGRPQGNSR 60
MTELPAPLSYFQNAQMSEDNHLSNTVRSQNDNRERQEHNDRRSLGHPEPLSNGRPQGNSR
Sbjct: 1 MTELPAPLSYFQNAQMSEDNHLSNTVRSQNDNRERQEHNDRRSLGHPEPLSNGRPQGNSR 60
Query: 61 QVVEQDEEEDEELTLKYGAKHVIMLFVPVTLCMVVVVATIKSVSFYTRKDGQLIYTPFTE 120
QVVEQDEEEDEELTLKYGAKHVIMLFVPVTLCMVVVVATIKSVSFYTRKDGQLIYTPFTE
Sbjct: 61 QVVEQDEEEDEELTLKYGAKHVIMLFVPVTLCMVVVVATIKSVSFYTRKDGQLIYTPFTE 120
Query: 121 DTETVGQRALHSILNAAIMISVIVVMTILLVVLYKYRCYKVIHAWLIISSLLLLFFFSFI 180
DTETVGQRALHSILNAAIMISVIVVMTILLVVLYKYRCYKVIHAWLIISSLLLLFFFSFI
Sbjct: 121 DTETVGQRALHSILNAAIMISVIVVMTILLVVLYKYRCYKVIHAWLIISSLLLLFFFSFI 180
Query: 181 YLGEVFKTYNVAVDYITVALLIWNFGVVGMISIHWKGPLRLQQAYLIMISALMALVFIKY 240
YLGEVFKTYNVAVDYITVALLIWNFGVVGMISIHWKGPLRLQQAYLIMISALMALVFIKY
Sbjct: 181 YLGEVFKTYNVAVDYITVALLIWNFGVVGMISIHWKGPLRLQQAYLIMISALMALVFIKY 240
Query: 241 LPEWTAWLILAVISVYDLVAVLCPKGPLRMLVETAQERNETLFPALIYSSTMVWLVNMAE 300
LPEWTAWLILAVISVYDLVAVLCPKGPLRMLVETAQERNETLFPALIYSSTMVWLVNMAE
Sbjct: 241 LPEWTAWLILAVISVYDLVAVLCPKGPLRMLVETAQERNETLFPALIYSSTMVWLVNMAE 300
Query: 301 GDPEAQRRVSKNSKYNAESTERESQDTVAENDDGGFSEEWEAQRDSHLGPHRSTPESRAA 360
GDPEAQRRVSKNSKYNAESTERESQDTVAENDDGGFSEEWEAQRDSHLGPHRSTPESRAA
Sbjct: 301 GDPEAQRRVSKNSKYNAESTERESQDTVAENDDGGFSEEWEAQRDSHLGPHRSTPESRAA 360
Query: 361 VQELSSSILAGEDPEERGVKLGLGDFIFYSVLVGKASATASGDWNTTIACFVAILIGLCL 420
VQELSSSILAGEDPEERGVKLGLGDFIFYSVLVGKASATASGDWNTTIACFVAILIGLCL
Sbjct: 361 VQELSSSILAGEDPEERGVKLGLGDFIFYSVLVGKASATASGDWNTTIACFVAILIGLCL 420
Query: 421 TLLLLAIFKKALPALPISITFGLVFYFATDYLVQPFMDQLAFHQFYI 467
TLLLLAIFKKALPALPISITFGLVFYFATDYLVQPFMDQLAFHQFYI
Sbjct: 421 TLLLLAIFKKALPALPISITFGLVFYFATDYLVQPFMDQLAFHQFYI 467
>gi|195947397 presenilin 1 isoform I-463 [Homo sapiens]
Length = 463
Score = 913 bits (2360), Expect = 0.0
Identities = 463/467 (99%), Positives = 463/467 (99%), Gaps = 4/467 (0%)
Query: 1 MTELPAPLSYFQNAQMSEDNHLSNTVRSQNDNRERQEHNDRRSLGHPEPLSNGRPQGNSR 60
MTELPAPLSYFQNAQMSEDNHLSNT NDNRERQEHNDRRSLGHPEPLSNGRPQGNSR
Sbjct: 1 MTELPAPLSYFQNAQMSEDNHLSNT----NDNRERQEHNDRRSLGHPEPLSNGRPQGNSR 56
Query: 61 QVVEQDEEEDEELTLKYGAKHVIMLFVPVTLCMVVVVATIKSVSFYTRKDGQLIYTPFTE 120
QVVEQDEEEDEELTLKYGAKHVIMLFVPVTLCMVVVVATIKSVSFYTRKDGQLIYTPFTE
Sbjct: 57 QVVEQDEEEDEELTLKYGAKHVIMLFVPVTLCMVVVVATIKSVSFYTRKDGQLIYTPFTE 116
Query: 121 DTETVGQRALHSILNAAIMISVIVVMTILLVVLYKYRCYKVIHAWLIISSLLLLFFFSFI 180
DTETVGQRALHSILNAAIMISVIVVMTILLVVLYKYRCYKVIHAWLIISSLLLLFFFSFI
Sbjct: 117 DTETVGQRALHSILNAAIMISVIVVMTILLVVLYKYRCYKVIHAWLIISSLLLLFFFSFI 176
Query: 181 YLGEVFKTYNVAVDYITVALLIWNFGVVGMISIHWKGPLRLQQAYLIMISALMALVFIKY 240
YLGEVFKTYNVAVDYITVALLIWNFGVVGMISIHWKGPLRLQQAYLIMISALMALVFIKY
Sbjct: 177 YLGEVFKTYNVAVDYITVALLIWNFGVVGMISIHWKGPLRLQQAYLIMISALMALVFIKY 236
Query: 241 LPEWTAWLILAVISVYDLVAVLCPKGPLRMLVETAQERNETLFPALIYSSTMVWLVNMAE 300
LPEWTAWLILAVISVYDLVAVLCPKGPLRMLVETAQERNETLFPALIYSSTMVWLVNMAE
Sbjct: 237 LPEWTAWLILAVISVYDLVAVLCPKGPLRMLVETAQERNETLFPALIYSSTMVWLVNMAE 296
Query: 301 GDPEAQRRVSKNSKYNAESTERESQDTVAENDDGGFSEEWEAQRDSHLGPHRSTPESRAA 360
GDPEAQRRVSKNSKYNAESTERESQDTVAENDDGGFSEEWEAQRDSHLGPHRSTPESRAA
Sbjct: 297 GDPEAQRRVSKNSKYNAESTERESQDTVAENDDGGFSEEWEAQRDSHLGPHRSTPESRAA 356
Query: 361 VQELSSSILAGEDPEERGVKLGLGDFIFYSVLVGKASATASGDWNTTIACFVAILIGLCL 420
VQELSSSILAGEDPEERGVKLGLGDFIFYSVLVGKASATASGDWNTTIACFVAILIGLCL
Sbjct: 357 VQELSSSILAGEDPEERGVKLGLGDFIFYSVLVGKASATASGDWNTTIACFVAILIGLCL 416
Query: 421 TLLLLAIFKKALPALPISITFGLVFYFATDYLVQPFMDQLAFHQFYI 467
TLLLLAIFKKALPALPISITFGLVFYFATDYLVQPFMDQLAFHQFYI
Sbjct: 417 TLLLLAIFKKALPALPISITFGLVFYFATDYLVQPFMDQLAFHQFYI 463
>gi|156105679 presenilin 2 isoform 1 [Homo sapiens]
Length = 448
Score = 558 bits (1438), Expect = e-159
Identities = 306/466 (65%), Positives = 345/466 (74%), Gaps = 42/466 (9%)
Query: 3 ELPAPLSYFQNAQMSEDNHLSNTVRSQNDNRERQEHNDRRSL-GHPEPLSNGRPQGNSRQ 61
E P P S + Q ED + RSQ + + +E DR G P GRP G
Sbjct: 24 ESPTPRSCQEGRQGPEDGENTAQWRSQENEEDGEEDPDRYVCSGVP-----GRPPGL--- 75
Query: 62 VVEQDEEEDEELTLKYGAKHVIMLFVPVTLCMVVVVATIKSVSFYTRKDGQLIYTPFTED 121
+EELTLKYGAKHVIMLFVPVTLCM+VVVATIKSV FYT K+GQLIYTPFTED
Sbjct: 76 --------EEELTLKYGAKHVIMLFVPVTLCMIVVVATIKSVRFYTEKNGQLIYTPFTED 127
Query: 122 TETVGQRALHSILNAAIMISVIVVMTILLVVLYKYRCYKVIHAWLIISSLLLLFFFSFIY 181
T +VGQR L+S+LN IMISVIVVMTI LVVLYKYRCYK IH WLI+SSL+LLF F++IY
Sbjct: 128 TPSVGQRLLNSVLNTLIMISVIVVMTIFLVVLYKYRCYKFIHGWLIMSSLMLLFLFTYIY 187
Query: 182 LGEVFKTYNVAVDYITVALLIWNFGVVGMISIHWKGPLRLQQAYLIMISALMALVFIKYL 241
LGEV KTYNVA+DY T+ L +WNFG VGM+ IHWKGPL LQQAYLIMISALMALVFIKYL
Sbjct: 188 LGEVLKTYNVAMDYPTLLLTVWNFGAVGMVCIHWKGPLVLQQAYLIMISALMALVFIKYL 247
Query: 242 PEWTAWLILAVISVYDLVAVLCPKGPLRMLVETAQERNETLFPALIYSSTMVWLVNMAEG 301
PEW+AW+IL ISVYDLVAVLCPKGPLRMLVETAQERNE +FPALIYSS MVW V MA+
Sbjct: 248 PEWSAWVILGAISVYDLVAVLCPKGPLRMLVETAQERNEPIFPALIYSSAMVWTVGMAKL 307
Query: 302 DPEAQRRVSKNSKYNAESTERESQDTVAENDDGGFSEEWEAQRDSHLGPHRSTPESRAAV 361
DP +Q + Y+ E E +S D+ E + E +E + G
Sbjct: 308 DPSSQGAL--QLPYDPE-MEEDSYDSFGE---PSYPEVFEPPLTGYPG------------ 349
Query: 362 QELSSSILAGEDPEERGVKLGLGDFIFYSVLVGKASATASGDWNTTIACFVAILIGLCLT 421
+EL E+ EERGVKLGLGDFIFYSVLVGKA+AT SGDWNTT+ACFVAILIGLCLT
Sbjct: 350 EEL-------EEEEERGVKLGLGDFIFYSVLVGKAAATGSGDWNTTLACFVAILIGLCLT 402
Query: 422 LLLLAIFKKALPALPISITFGLVFYFATDYLVQPFMDQLAFHQFYI 467
LLLLA+FKKALPALPISITFGL+FYF+TD LV+PFMD LA HQ YI
Sbjct: 403 LLLLAVFKKALPALPISITFGLIFYFSTDNLVRPFMDTLASHQLYI 448
>gi|156105681 presenilin 2 isoform 2 [Homo sapiens]
Length = 447
Score = 556 bits (1433), Expect = e-158
Identities = 302/466 (64%), Positives = 342/466 (73%), Gaps = 43/466 (9%)
Query: 3 ELPAPLSYFQNAQMSEDNHLSNTVRSQNDNRERQEHNDRRSL-GHPEPLSNGRPQGNSRQ 61
E P P S + Q ED + RSQ + + +E DR G P GRP G
Sbjct: 24 ESPTPRSCQEGRQGPEDGENTAQWRSQENEEDGEEDPDRYVCSGVP-----GRPPGL--- 75
Query: 62 VVEQDEEEDEELTLKYGAKHVIMLFVPVTLCMVVVVATIKSVSFYTRKDGQLIYTPFTED 121
+EELTLKYGAKHVIMLFVPVTLCM+VVVATIKSV FYT K+GQLIYTPFTED
Sbjct: 76 --------EEELTLKYGAKHVIMLFVPVTLCMIVVVATIKSVRFYTEKNGQLIYTPFTED 127
Query: 122 TETVGQRALHSILNAAIMISVIVVMTILLVVLYKYRCYKVIHAWLIISSLLLLFFFSFIY 181
T +VGQR L+S+LN IMISVIVVMTI LVVLYKYRCYK IH WLI+SSL+LLF F++IY
Sbjct: 128 TPSVGQRLLNSVLNTLIMISVIVVMTIFLVVLYKYRCYKFIHGWLIMSSLMLLFLFTYIY 187
Query: 182 LGEVFKTYNVAVDYITVALLIWNFGVVGMISIHWKGPLRLQQAYLIMISALMALVFIKYL 241
LGEV KTYNVA+DY T+ L +WNFG VGM+ IHWKGPL LQQAYLIMISALMALVFIKYL
Sbjct: 188 LGEVLKTYNVAMDYPTLLLTVWNFGAVGMVCIHWKGPLVLQQAYLIMISALMALVFIKYL 247
Query: 242 PEWTAWLILAVISVYDLVAVLCPKGPLRMLVETAQERNETLFPALIYSSTMVWLVNMAEG 301
PEW+AW+IL ISVYDLVAVLCPKGPLRMLVETAQERNE +FPALIYSS MVW V MA+
Sbjct: 248 PEWSAWVILGAISVYDLVAVLCPKGPLRMLVETAQERNEPIFPALIYSSAMVWTVGMAKL 307
Query: 302 DPEAQRRVSKNSKYNAESTERESQDTVAENDDGGFSEEWEAQRDSHLGPHRSTPESRAAV 361
DP +Q + + E +D+ + + E +E + G
Sbjct: 308 DPSSQGALQL-------PYDPEMEDSYDSFGEPSYPEVFEPPLTGYPG------------ 348
Query: 362 QELSSSILAGEDPEERGVKLGLGDFIFYSVLVGKASATASGDWNTTIACFVAILIGLCLT 421
+EL E+ EERGVKLGLGDFIFYSVLVGKA+AT SGDWNTT+ACFVAILIGLCLT
Sbjct: 349 EEL-------EEEEERGVKLGLGDFIFYSVLVGKAAATGSGDWNTTLACFVAILIGLCLT 401
Query: 422 LLLLAIFKKALPALPISITFGLVFYFATDYLVQPFMDQLAFHQFYI 467
LLLLA+FKKALPALPISITFGL+FYF+TD LV+PFMD LA HQ YI
Sbjct: 402 LLLLAVFKKALPALPISITFGLIFYFSTDNLVRPFMDTLASHQLYI 447
>gi|68223315 CD47 antigen isoform 3 precursor [Homo sapiens]
Length = 312
Score = 41.6 bits (96), Expect = 0.002
Identities = 38/187 (20%), Positives = 83/187 (44%), Gaps = 15/187 (8%)
Query: 61 QVVEQDEEEDEELTLKYGAKHVIMLFVPVTLCMVVVVATIKSVSFYTRKDGQLI-YTPFT 119
+V E E + + LKY V+ F P ++V+ + F+ + + + Y
Sbjct: 115 EVTELTREGETIIELKY---RVVSWFSPNENILIVIFPIFAILLFWGQFGIKTLKYRSGG 171
Query: 120 EDTETVGQRALHSILNAAIMISVIVVMTILLVVLYKYRCYKVIHAWLIISSLLLLFFFSF 179
D +T+ ++L A ++I+VIV++ +L V +Y LI++S +L +
Sbjct: 172 MDEKTI------ALLVAGLVITVIVIVGAILFVPGEYSLKNATGLGLIVTSTGILILLHY 225
Query: 180 IYLGEVFKTYNVAVDYITVALLIWNFGVVGM-----ISIHWKGPLRLQQAYLIMISALMA 234
+ + + + ++ + VVG+ I GPL + ++ ++ L+
Sbjct: 226 YVFSTAIGLTSFVIAILVIQVIAYILAVVGLSLCIAACIPMHGPLLISGLSILALAQLLG 285
Query: 235 LVFIKYL 241
LV++K++
Sbjct: 286 LVYMKFV 292
>gi|38683836 CD47 antigen isoform 2 precursor [Homo sapiens]
Length = 305
Score = 41.6 bits (96), Expect = 0.002
Identities = 38/187 (20%), Positives = 83/187 (44%), Gaps = 15/187 (8%)
Query: 61 QVVEQDEEEDEELTLKYGAKHVIMLFVPVTLCMVVVVATIKSVSFYTRKDGQLI-YTPFT 119
+V E E + + LKY V+ F P ++V+ + F+ + + + Y
Sbjct: 115 EVTELTREGETIIELKY---RVVSWFSPNENILIVIFPIFAILLFWGQFGIKTLKYRSGG 171
Query: 120 EDTETVGQRALHSILNAAIMISVIVVMTILLVVLYKYRCYKVIHAWLIISSLLLLFFFSF 179
D +T+ ++L A ++I+VIV++ +L V +Y LI++S +L +
Sbjct: 172 MDEKTI------ALLVAGLVITVIVIVGAILFVPGEYSLKNATGLGLIVTSTGILILLHY 225
Query: 180 IYLGEVFKTYNVAVDYITVALLIWNFGVVGM-----ISIHWKGPLRLQQAYLIMISALMA 234
+ + + + ++ + VVG+ I GPL + ++ ++ L+
Sbjct: 226 YVFSTAIGLTSFVIAILVIQVIAYILAVVGLSLCIAACIPMHGPLLISGLSILALAQLLG 285
Query: 235 LVFIKYL 241
LV++K++
Sbjct: 286 LVYMKFV 292
>gi|4502673 CD47 antigen isoform 1 precursor [Homo sapiens]
Length = 323
Score = 41.6 bits (96), Expect = 0.002
Identities = 38/187 (20%), Positives = 83/187 (44%), Gaps = 15/187 (8%)
Query: 61 QVVEQDEEEDEELTLKYGAKHVIMLFVPVTLCMVVVVATIKSVSFYTRKDGQLI-YTPFT 119
+V E E + + LKY V+ F P ++V+ + F+ + + + Y
Sbjct: 115 EVTELTREGETIIELKY---RVVSWFSPNENILIVIFPIFAILLFWGQFGIKTLKYRSGG 171
Query: 120 EDTETVGQRALHSILNAAIMISVIVVMTILLVVLYKYRCYKVIHAWLIISSLLLLFFFSF 179
D +T+ ++L A ++I+VIV++ +L V +Y LI++S +L +
Sbjct: 172 MDEKTI------ALLVAGLVITVIVIVGAILFVPGEYSLKNATGLGLIVTSTGILILLHY 225
Query: 180 IYLGEVFKTYNVAVDYITVALLIWNFGVVGM-----ISIHWKGPLRLQQAYLIMISALMA 234
+ + + + ++ + VVG+ I GPL + ++ ++ L+
Sbjct: 226 YVFSTAIGLTSFVIAILVIQVIAYILAVVGLSLCIAACIPMHGPLLISGLSILALAQLLG 285
Query: 235 LVFIKYL 241
LV++K++
Sbjct: 286 LVYMKFV 292
>gi|4826934 protein phosphatase 4, regulatory subunit 1 isoform b
[Homo sapiens]
Length = 933
Score = 33.9 bits (76), Expect = 0.32
Identities = 29/119 (24%), Positives = 52/119 (43%), Gaps = 3/119 (2%)
Query: 265 KGPLRMLVETAQERNETLFPALIYSSTMVWLVNMAEGDPEAQRRVSKNSKYNAESTERES 324
K LR V T + + L +Y+S W + E D + + + K + E E ES
Sbjct: 414 KSMLRPEVGTTSQ-DSALLDQELYNSFHFWRTPLPEIDLDIELEQNSGGKPSPEGPEEES 472
Query: 325 QDTVAENDDGGFSEEWEAQR-DSHLGPHRSTPESRAAVQELSSSILAGE-DPEERGVKL 381
+ V + + + E + +L PH P+ +A V+ LS+++ A D E + +
Sbjct: 473 EGPVPSSPNITMATRKELEEMIENLEPHIDDPDVKAQVEVLSAALRASSLDAHEETISI 531
>gi|108936953 protein phosphatase 4, regulatory subunit 1 isoform a
[Homo sapiens]
Length = 950
Score = 33.9 bits (76), Expect = 0.32
Identities = 29/119 (24%), Positives = 52/119 (43%), Gaps = 3/119 (2%)
Query: 265 KGPLRMLVETAQERNETLFPALIYSSTMVWLVNMAEGDPEAQRRVSKNSKYNAESTERES 324
K LR V T + + L +Y+S W + E D + + + K + E E ES
Sbjct: 431 KSMLRPEVGTTSQ-DSALLDQELYNSFHFWRTPLPEIDLDIELEQNSGGKPSPEGPEEES 489
Query: 325 QDTVAENDDGGFSEEWEAQR-DSHLGPHRSTPESRAAVQELSSSILAGE-DPEERGVKL 381
+ V + + + E + +L PH P+ +A V+ LS+++ A D E + +
Sbjct: 490 EGPVPSSPNITMATRKELEEMIENLEPHIDDPDVKAQVEVLSAALRASSLDAHEETISI 548
>gi|30581111 minor histocompatibility antigen 13 isoform 3 [Homo
sapiens]
Length = 426
Score = 32.0 bits (71), Expect = 1.2
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 8/84 (9%)
Query: 381 LGLGDF----IFYSVLVGKASATASGDWNTTIACFVAILIGLCLTLLLLAIFKKALPAL- 435
LGLGD IF ++L+ + F A + GL LT+ ++ IFK A PAL
Sbjct: 261 LGLGDVVIPGIFIALLLRFDISLKKNTHTYFYTSFAAYIFGLGLTIFIMHIFKHAQPALL 320
Query: 436 ---PISITFGLVFYFATDYLVQPF 456
P I F ++ A + + F
Sbjct: 321 YLVPACIGFPVLVALAKGEVTEMF 344
>gi|30581109 minor histocompatibility antigen 13 isoform 2 [Homo
sapiens]
Length = 394
Score = 32.0 bits (71), Expect = 1.2
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 8/84 (9%)
Query: 381 LGLGDF----IFYSVLVGKASATASGDWNTTIACFVAILIGLCLTLLLLAIFKKALPAL- 435
LGLGD IF ++L+ + F A + GL LT+ ++ IFK A PAL
Sbjct: 261 LGLGDVVIPGIFIALLLRFDISLKKNTHTYFYTSFAAYIFGLGLTIFIMHIFKHAQPALL 320
Query: 436 ---PISITFGLVFYFATDYLVQPF 456
P I F ++ A + + F
Sbjct: 321 YLVPACIGFPVLVALAKGEVTEMF 344
>gi|23308607 minor histocompatibility antigen 13 isoform 1 [Homo
sapiens]
Length = 377
Score = 32.0 bits (71), Expect = 1.2
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 8/84 (9%)
Query: 381 LGLGDF----IFYSVLVGKASATASGDWNTTIACFVAILIGLCLTLLLLAIFKKALPAL- 435
LGLGD IF ++L+ + F A + GL LT+ ++ IFK A PAL
Sbjct: 261 LGLGDVVIPGIFIALLLRFDISLKKNTHTYFYTSFAAYIFGLGLTIFIMHIFKHAQPALL 320
Query: 436 ---PISITFGLVFYFATDYLVQPF 456
P I F ++ A + + F
Sbjct: 321 YLVPACIGFPVLVALAKGEVTEMF 344
>gi|118582255 ATP-binding cassette, sub-family C, member 8 [Homo
sapiens]
Length = 1581
Score = 31.6 bits (70), Expect = 1.6
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 8 LSYFQNAQMSEDNHLSNTVRSQNDNRERQEHNDRRSLGHPEPLSNGRPQGNSRQVVEQDE 67
L FQ ++ H + Q+ E++ +R++ P+ LS +SR + QDE
Sbjct: 913 LKDFQRSECQLFEHWKTLMNRQDQELEKETVTERKATEPPQGLSRAM---SSRDGLLQDE 969
Query: 68 EEDEE 72
EE+EE
Sbjct: 970 EEEEE 974
>gi|40789233 coenzyme Q9 homolog [Homo sapiens]
Length = 318
Score = 30.8 bits (68), Expect = 2.7
Identities = 17/66 (25%), Positives = 33/66 (50%)
Query: 23 SNTVRSQNDNRERQEHNDRRSLGHPEPLSNGRPQGNSRQVVEQDEEEDEELTLKYGAKHV 82
S+ + Q N Q+H++ + P+P S+ P + Q E++E+ + E L++
Sbjct: 47 SDEQKQQPPNSFSQQHSETQGAEKPDPESSHSPPRYTDQGGEEEEDYESEEQLQHRILTA 106
Query: 83 IMLFVP 88
+ FVP
Sbjct: 107 ALEFVP 112
>gi|4502805 chromogranin A precursor [Homo sapiens]
Length = 457
Score = 30.8 bits (68), Expect = 2.7
Identities = 14/58 (24%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 18 EDNHLSNTVRSQNDNRERQEHNDR----RSLGHPEPLSNGRPQGNSRQVVEQDEEEDE 71
E+ + + + D++E ++ + R PEP+ + +GN++ E++EEE+E
Sbjct: 122 EEPSSKDVMEKREDSKEAEKSGEATDGARPQALPEPMQESKAEGNNQAPGEEEEEEEE 179
>gi|189409130 zinc finger E-box binding homeobox 1 isoform a [Homo
sapiens]
Length = 1108
Score = 30.8 bits (68), Expect = 2.7
Identities = 16/60 (26%), Positives = 28/60 (46%)
Query: 14 AQMSEDNHLSNTVRSQNDNRERQEHNDRRSLGHPEPLSNGRPQGNSRQVVEQDEEEDEEL 73
+Q D S T D+ + +E D+ E +PQG+ + E++E E+EE+
Sbjct: 1002 SQGDSDERESLTREEDEDSEKEEEEEDKEMEELQEEKECEKPQGDEEEEEEEEEVEEEEV 1061
>gi|189409128 zinc finger E-box binding homeobox 1 isoform b [Homo
sapiens]
Length = 1124
Score = 30.8 bits (68), Expect = 2.7
Identities = 16/60 (26%), Positives = 28/60 (46%)
Query: 14 AQMSEDNHLSNTVRSQNDNRERQEHNDRRSLGHPEPLSNGRPQGNSRQVVEQDEEEDEEL 73
+Q D S T D+ + +E D+ E +PQG+ + E++E E+EE+
Sbjct: 1018 SQGDSDERESLTREEDEDSEKEEEEEDKEMEELQEEKECEKPQGDEEEEEEEEEVEEEEV 1077
>gi|197313748 SET domain containing 2 [Homo sapiens]
Length = 2564
Score = 30.8 bits (68), Expect = 2.7
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 2 TELPAPLSYFQNAQMSEDNHLSNTVRSQNDNRERQEHNDRRS--LGHPEPLSNGRPQGNS 59
TE +S+ Q+++ DN L Q+D + H D +S LGHP + + S
Sbjct: 1137 TEKNPEISFTQSSRKQIDNRLPELSHPQSDGVDSTSHTDVKSDPLGHPNSEETVKAKIPS 1196
Query: 60 RQVVE 64
RQ E
Sbjct: 1197 RQQEE 1201
>gi|150421684 ATPase, class VI, type 11A isoform a [Homo sapiens]
Length = 1134
Score = 30.8 bits (68), Expect = 2.7
Identities = 34/159 (21%), Positives = 61/159 (38%), Gaps = 39/159 (24%)
Query: 139 MISVIVVMTILLVVLYKYRCYKVIHAWLIISSLLLLFFFSFIYLGEVFKTYNVAVDYITV 198
++ ++V T+ L + + I+ ++I SLL FS ++ G
Sbjct: 1007 LVFTVMVFTVTLKLALDTHYWTWINHFVIWGSLLFYVVFSLLWGG--------------- 1051
Query: 199 ALLIWNFGVVGMISIHWKGPLRLQQAYLIMISALMALVFIKYLPEWTAWLILAVISVYDL 258
+IW F L Q+ Y VFI+ L AWL + ++ L
Sbjct: 1052 --VIWPF-------------LNYQRMYY---------VFIQMLSSGPAWLAIVLLVTISL 1087
Query: 259 VAVLCPKGPLRMLVETAQERNETLFPALIYSSTMVWLVN 297
+ + K R L TA ER +T L + +++++
Sbjct: 1088 LPDVLKKVLCRQLWPTATERVQTKSQCLSVEQSTIFMLS 1126
>gi|21314755 signal peptide peptidase-like 2A [Homo sapiens]
Length = 520
Score = 30.8 bits (68), Expect = 2.7
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 381 LGLGDFIFYSVLVG---KASATASGDWNTTIACFVAILIGLCLTLLLLAIFKKALPAL 435
LG GD I +L+ + + ++ VA IG+ LT ++L + KK PAL
Sbjct: 408 LGFGDIIVPGLLIAYCRRFDVQTGSSYIYYVSSTVAYAIGMILTFVVLVLMKKGQPAL 465
>gi|18034692 CDW92 antigen [Homo sapiens]
Length = 657
Score = 30.8 bits (68), Expect = 2.7
Identities = 38/235 (16%), Positives = 93/235 (39%), Gaps = 12/235 (5%)
Query: 51 SNGRPQGNSRQVVEQDEEEDEELTLKYGAKHVIMLFVPVTLCMVVVVATIKSVSFYTRKD 110
+ G P N + VE + Y +I + + C + VA ++TR
Sbjct: 361 TTGSPVQNEQGFVEFKISGPLQYMWWYHVVGLIWISEFILACQQMTVAGAVVTYYFTRDK 420
Query: 111 GQLIYTPFTEDTETVGQRALHSILNAAIMISVIVVMTILLVVLY------KYRCYKVIHA 164
L +TP + + L ++ + +I+++ + ++L+ ++ + C + +
Sbjct: 421 RNLPFTPILASVNRLIRYHLGTVAKGSFIITLVKIPRMILMYIHSQLKGKENACARCVLK 480
Query: 165 WLIISSLLLLFFFSFIYLGEVFKTYNVAVDYITVA-----LLIWNFGVVGMISIHWKGPL 219
I L +++ T + ++ T A +L+ N V I+ L
Sbjct: 481 SCICCLWCLEKCLNYLNQNAYTATAINSTNFCTSAKDAFVILVENALRVATINTVGDFML 540
Query: 220 RLQQAYLIMISALMALVFIKYLPEWTAWLI-LAVISVYDLVAVLCPKGPLRMLVE 273
L + ++ + L ++ + Y ++T W++ L ++ ++ + C M+V+
Sbjct: 541 FLGKVLIVCSTGLAGIMLLNYQQDYTVWVLPLIIVCLFAFLVAHCFLSIYEMVVD 595
>gi|148228819 G protein-coupled receptor 89A isoform 1 [Homo
sapiens]
Length = 455
Score = 30.0 bits (66), Expect = 4.7
Identities = 18/85 (21%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 128 RALHSILNAAIMISVIVVMTILLVVLYKYRCYKVIHAWLIISSLLLLFFFSFIY--LGEV 185
R H +N +++ ++V M + + +++H ++ S LL F + + LG+
Sbjct: 71 RYFHWKMNLCVILLILVFMVPFYIGYFIVSNIRLLHKQRLLFSCLLWLTFMYFFWKLGDP 130
Query: 186 FKTYNVAVDYITVALLIWNFGVVGM 210
F + +++ LI GV+G+
Sbjct: 131 FPILSPKHGILSIEQLISRVGVIGV 155
>gi|7706704 G protein-coupled receptor 89B [Homo sapiens]
Length = 455
Score = 30.0 bits (66), Expect = 4.7
Identities = 18/85 (21%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 128 RALHSILNAAIMISVIVVMTILLVVLYKYRCYKVIHAWLIISSLLLLFFFSFIY--LGEV 185
R H +N +++ ++V M + + +++H ++ S LL F + + LG+
Sbjct: 71 RYFHWKMNLCVILLILVFMVPFYIGYFIVSNIRLLHKQRLLFSCLLWLTFMYFFWKLGDP 130
Query: 186 FKTYNVAVDYITVALLIWNFGVVGM 210
F + +++ LI GV+G+
Sbjct: 131 FPILSPKHGILSIEQLISRVGVIGV 155
>gi|94721321 coiled-coil domain containing 11 [Homo sapiens]
Length = 514
Score = 30.0 bits (66), Expect = 4.7
Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
Query: 304 EAQRRVSKNSKYNAESTERESQDTVAENDDGGFSEEWEAQRDSHLGPHRS--TPESRAAV 361
E + R+ + +K E E+E QD VAE D F E E R L H+ E +A +
Sbjct: 125 EKKDRMREKTKLLKEKNEKERQDFVAEKLDQQFRERCEELRVELLSIHQKKVCEERKAQI 184
Query: 362 ---QELSSSILAGE 372
+ELS L E
Sbjct: 185 AFNEELSRQKLVEE 198
>gi|156416026 zinc finger protein 219 [Homo sapiens]
Length = 722
Score = 30.0 bits (66), Expect = 4.7
Identities = 22/67 (32%), Positives = 27/67 (40%)
Query: 5 PAPLSYFQNAQMSEDNHLSNTVRSQNDNRERQEHNDRRSLGHPEPLSNGRPQGNSRQVVE 64
PAP + S +LS N E E RS G PLS+ P R E
Sbjct: 365 PAPTPAERREPPSLLGYLSLRAGEGRPNGEGAEPGPGRSFGGFRPLSSALPARARRHRAE 424
Query: 65 QDEEEDE 71
+ EEE+E
Sbjct: 425 EPEEEEE 431
>gi|156415998 zinc finger protein 219 [Homo sapiens]
Length = 722
Score = 30.0 bits (66), Expect = 4.7
Identities = 22/67 (32%), Positives = 27/67 (40%)
Query: 5 PAPLSYFQNAQMSEDNHLSNTVRSQNDNRERQEHNDRRSLGHPEPLSNGRPQGNSRQVVE 64
PAP + S +LS N E E RS G PLS+ P R E
Sbjct: 365 PAPTPAERREPPSLLGYLSLRAGEGRPNGEGAEPGPGRSFGGFRPLSSALPARARRHRAE 424
Query: 65 QDEEEDE 71
+ EEE+E
Sbjct: 425 EPEEEEE 431
>gi|52218862 olfactory receptor, family 13, subfamily J, member 1
[Homo sapiens]
Length = 312
Score = 30.0 bits (66), Expect = 4.7
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 116 TPFTEDTETVGQRALHSILNAAIMISVIVVMTILLVVLYKYRCYKVIHAWLIISSLLLLF 175
T +ED G L + A I +S ++++ +L V RC K L +++LLF
Sbjct: 192 TSVSEDFLLAGSILLLPVPLAFICLSYLLILATILRVPSAARCCKAFSTCLAHLAVVLLF 251
Query: 176 FFS--FIYLGEVFKTYNVAVDYITV 198
+ + F+YL K +++ + TV
Sbjct: 252 YGTIIFMYLKPKSKEAHISDEVFTV 276
>gi|156415996 zinc finger protein 219 [Homo sapiens]
Length = 722
Score = 30.0 bits (66), Expect = 4.7
Identities = 22/67 (32%), Positives = 27/67 (40%)
Query: 5 PAPLSYFQNAQMSEDNHLSNTVRSQNDNRERQEHNDRRSLGHPEPLSNGRPQGNSRQVVE 64
PAP + S +LS N E E RS G PLS+ P R E
Sbjct: 365 PAPTPAERREPPSLLGYLSLRAGEGRPNGEGAEPGPGRSFGGFRPLSSALPARARRHRAE 424
Query: 65 QDEEEDE 71
+ EEE+E
Sbjct: 425 EPEEEEE 431
>gi|57977305 G protein-coupled receptor 151 [Homo sapiens]
Length = 419
Score = 30.0 bits (66), Expect = 4.7
Identities = 29/110 (26%), Positives = 53/110 (48%), Gaps = 16/110 (14%)
Query: 227 IMISALMALVFIKYLPEWTAWLILAVISVYDLVAV--LCPKGPLRMLVETAQERNETLFP 284
+M+ ++ + + +LPEW AWL V+ L A P+G + + ++ L
Sbjct: 250 VMLLSIAIISALLWLPEWVAWL-----WVWHLKAAGPAPPQGFIAL--------SQVLMF 296
Query: 285 ALIYSSTMVWLVNMAEGDPEAQRRVSKNSKYNAESTERESQDTVAENDDG 334
++ ++ +++LV M+E E + V K T ESQ+T A N +G
Sbjct: 297 SISSANPLIFLV-MSEEFREGLKGVWKWMITKKPPTVSESQETPAGNSEG 345
>gi|41281808 harmonin isoform b3 [Homo sapiens]
Length = 899
Score = 29.6 bits (65), Expect = 6.1
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 4/91 (4%)
Query: 23 SNTVRSQNDNRERQEHNDRRSLGHPEPLSNGRPQGNSRQVVEQDEEEDEELTLKYGAKHV 82
SN + + ERQ R+ + N R + Q+VE++E+ ++ +G+K
Sbjct: 327 SNKILQEQQEMERQR---RKEIAQKAAEENERYRKEMEQIVEEEEKFKKQWEEDWGSKEQ 383
Query: 83 IMLFVPVTL-CMVVVVATIKSVSFYTRKDGQ 112
++L +T V + KS ++ R DG+
Sbjct: 384 LLLPKTITAEVHPVPLRKPKSFGWFYRYDGK 414
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.136 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,576,321
Number of Sequences: 37866
Number of extensions: 697225
Number of successful extensions: 3276
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 3220
Number of HSP's gapped (non-prelim): 67
length of query: 467
length of database: 18,247,518
effective HSP length: 106
effective length of query: 361
effective length of database: 14,233,722
effective search space: 5138373642
effective search space used: 5138373642
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.