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Search of human proteins with 4505615
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4505615 paired box gene 6 isoform a [Homo sapiens]
(422 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|189083681 paired box gene 6 isoform a [Homo sapiens] 861 0.0
gi|4505615 paired box gene 6 isoform a [Homo sapiens] 861 0.0
gi|4580424 paired box gene 6 isoform b [Homo sapiens] 852 0.0
gi|7524359 paired box 7 isoform 2 [Homo sapiens] 262 5e-70
gi|188219638 paired box 3 isoform PAX3i [Homo sapiens] 259 2e-69
gi|4505619 paired box 7 isoform 1 [Homo sapiens] 257 2e-68
gi|207029223 paired box 7 isoform 3 [Homo sapiens] 257 2e-68
gi|31563344 paired box 3 isoform PAX3e [Homo sapiens] 255 6e-68
gi|31563342 paired box 3 isoform PAX3d [Homo sapiens] 255 6e-68
gi|31563340 paired box 3 isoform PAX3 [Homo sapiens] 255 6e-68
gi|31563348 paired box 3 isoform PAX3g [Homo sapiens] 254 1e-67
gi|31563346 paired box 3 isoform PAX3h [Homo sapiens] 254 1e-67
gi|170784824 paired box 4 [Homo sapiens] 244 8e-65
gi|34878709 paired box protein 2 isoform c [Homo sapiens] 239 3e-63
gi|34878716 paired box protein 2 isoform d [Homo sapiens] 235 5e-62
gi|34878701 paired box protein 2 isoform b [Homo sapiens] 235 5e-62
gi|34878699 paired box protein 2 isoform a [Homo sapiens] 229 3e-60
gi|34878703 paired box protein 2 isoform e [Homo sapiens] 229 3e-60
gi|5803117 paired box 8 isoform PAX8A [Homo sapiens] 227 2e-59
gi|9951920 paired box 5 [Homo sapiens] 225 7e-59
gi|7524365 paired box 8 isoform PAX8D [Homo sapiens] 222 4e-58
gi|7669542 paired box 8 isoform PAX8E [Homo sapiens] 222 4e-58
gi|7524363 paired box 8 isoform PAX8C [Homo sapiens] 222 4e-58
gi|7524361 paired box 8 isoform PAX8B [Homo sapiens] 222 4e-58
gi|197276661 paired box 1 [Homo sapiens] 182 4e-46
gi|7242167 paired box 9 [Homo sapiens] 181 8e-46
gi|7524356 paired box 3 isoform PAX3b [Homo sapiens] 173 2e-43
gi|6654638 paired box 3 isoform PAX3a [Homo sapiens] 173 2e-43
gi|126116581 retina and anterior neural fold homeobox [Homo sapi... 109 4e-24
gi|12707577 paired mesoderm homeobox 1 isoform pmx-1b [Homo sapi... 108 9e-24
>gi|189083681 paired box gene 6 isoform a [Homo sapiens]
Length = 422
Score = 861 bits (2225), Expect = 0.0
Identities = 422/422 (100%), Positives = 422/422 (100%)
Query: 1 MQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRY 60
MQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRY
Sbjct: 1 MQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRY 60
Query: 61 YETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIPSV 120
YETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIPSV
Sbjct: 61 YETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIPSV 120
Query: 121 SSINRVLRNLASEKQQMGADGMYDKLRMLNGQTGSWGTRPGWYPGTSVPGQPTQDGCQQQ 180
SSINRVLRNLASEKQQMGADGMYDKLRMLNGQTGSWGTRPGWYPGTSVPGQPTQDGCQQQ
Sbjct: 121 SSINRVLRNLASEKQQMGADGMYDKLRMLNGQTGSWGTRPGWYPGTSVPGQPTQDGCQQQ 180
Query: 181 EGGGENTNSISSNGEDSDEAQMRLQLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVFAR 240
EGGGENTNSISSNGEDSDEAQMRLQLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVFAR
Sbjct: 181 EGGGENTNSISSNGEDSDEAQMRLQLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVFAR 240
Query: 241 ERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQASNTPSHIPISSSFSTSVYQPIP 300
ERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQASNTPSHIPISSSFSTSVYQPIP
Sbjct: 241 ERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQASNTPSHIPISSSFSTSVYQPIP 300
Query: 301 QPTTPVSSFTSGSMLGRTDTALTNTYSALPPMPSFTMANNLPMQPPVPSQTSSYSCMLPT 360
QPTTPVSSFTSGSMLGRTDTALTNTYSALPPMPSFTMANNLPMQPPVPSQTSSYSCMLPT
Sbjct: 301 QPTTPVSSFTSGSMLGRTDTALTNTYSALPPMPSFTMANNLPMQPPVPSQTSSYSCMLPT 360
Query: 361 SPSVNGRSYDTYTPPHMQTHMNSQPMGTSGTTSTGLISPGVSVPVQVPGSEPDMSQYWPR 420
SPSVNGRSYDTYTPPHMQTHMNSQPMGTSGTTSTGLISPGVSVPVQVPGSEPDMSQYWPR
Sbjct: 361 SPSVNGRSYDTYTPPHMQTHMNSQPMGTSGTTSTGLISPGVSVPVQVPGSEPDMSQYWPR 420
Query: 421 LQ 422
LQ
Sbjct: 421 LQ 422
>gi|4505615 paired box gene 6 isoform a [Homo sapiens]
Length = 422
Score = 861 bits (2225), Expect = 0.0
Identities = 422/422 (100%), Positives = 422/422 (100%)
Query: 1 MQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRY 60
MQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRY
Sbjct: 1 MQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRY 60
Query: 61 YETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIPSV 120
YETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIPSV
Sbjct: 61 YETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIPSV 120
Query: 121 SSINRVLRNLASEKQQMGADGMYDKLRMLNGQTGSWGTRPGWYPGTSVPGQPTQDGCQQQ 180
SSINRVLRNLASEKQQMGADGMYDKLRMLNGQTGSWGTRPGWYPGTSVPGQPTQDGCQQQ
Sbjct: 121 SSINRVLRNLASEKQQMGADGMYDKLRMLNGQTGSWGTRPGWYPGTSVPGQPTQDGCQQQ 180
Query: 181 EGGGENTNSISSNGEDSDEAQMRLQLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVFAR 240
EGGGENTNSISSNGEDSDEAQMRLQLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVFAR
Sbjct: 181 EGGGENTNSISSNGEDSDEAQMRLQLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVFAR 240
Query: 241 ERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQASNTPSHIPISSSFSTSVYQPIP 300
ERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQASNTPSHIPISSSFSTSVYQPIP
Sbjct: 241 ERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQASNTPSHIPISSSFSTSVYQPIP 300
Query: 301 QPTTPVSSFTSGSMLGRTDTALTNTYSALPPMPSFTMANNLPMQPPVPSQTSSYSCMLPT 360
QPTTPVSSFTSGSMLGRTDTALTNTYSALPPMPSFTMANNLPMQPPVPSQTSSYSCMLPT
Sbjct: 301 QPTTPVSSFTSGSMLGRTDTALTNTYSALPPMPSFTMANNLPMQPPVPSQTSSYSCMLPT 360
Query: 361 SPSVNGRSYDTYTPPHMQTHMNSQPMGTSGTTSTGLISPGVSVPVQVPGSEPDMSQYWPR 420
SPSVNGRSYDTYTPPHMQTHMNSQPMGTSGTTSTGLISPGVSVPVQVPGSEPDMSQYWPR
Sbjct: 361 SPSVNGRSYDTYTPPHMQTHMNSQPMGTSGTTSTGLISPGVSVPVQVPGSEPDMSQYWPR 420
Query: 421 LQ 422
LQ
Sbjct: 421 LQ 422
>gi|4580424 paired box gene 6 isoform b [Homo sapiens]
Length = 436
Score = 852 bits (2200), Expect = 0.0
Identities = 422/436 (96%), Positives = 422/436 (96%), Gaps = 14/436 (3%)
Query: 1 MQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQ------------- 47
MQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQ
Sbjct: 1 MQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQTHADAKVQVLDNQ 60
Query: 48 -VSNGCVSKILGRYYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRL 106
VSNGCVSKILGRYYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRL
Sbjct: 61 NVSNGCVSKILGRYYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRL 120
Query: 107 LSEGVCTNDNIPSVSSINRVLRNLASEKQQMGADGMYDKLRMLNGQTGSWGTRPGWYPGT 166
LSEGVCTNDNIPSVSSINRVLRNLASEKQQMGADGMYDKLRMLNGQTGSWGTRPGWYPGT
Sbjct: 121 LSEGVCTNDNIPSVSSINRVLRNLASEKQQMGADGMYDKLRMLNGQTGSWGTRPGWYPGT 180
Query: 167 SVPGQPTQDGCQQQEGGGENTNSISSNGEDSDEAQMRLQLKRKLQRNRTSFTQEQIEALE 226
SVPGQPTQDGCQQQEGGGENTNSISSNGEDSDEAQMRLQLKRKLQRNRTSFTQEQIEALE
Sbjct: 181 SVPGQPTQDGCQQQEGGGENTNSISSNGEDSDEAQMRLQLKRKLQRNRTSFTQEQIEALE 240
Query: 227 KEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQASNTPSHIP 286
KEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQASNTPSHIP
Sbjct: 241 KEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQASNTPSHIP 300
Query: 287 ISSSFSTSVYQPIPQPTTPVSSFTSGSMLGRTDTALTNTYSALPPMPSFTMANNLPMQPP 346
ISSSFSTSVYQPIPQPTTPVSSFTSGSMLGRTDTALTNTYSALPPMPSFTMANNLPMQPP
Sbjct: 301 ISSSFSTSVYQPIPQPTTPVSSFTSGSMLGRTDTALTNTYSALPPMPSFTMANNLPMQPP 360
Query: 347 VPSQTSSYSCMLPTSPSVNGRSYDTYTPPHMQTHMNSQPMGTSGTTSTGLISPGVSVPVQ 406
VPSQTSSYSCMLPTSPSVNGRSYDTYTPPHMQTHMNSQPMGTSGTTSTGLISPGVSVPVQ
Sbjct: 361 VPSQTSSYSCMLPTSPSVNGRSYDTYTPPHMQTHMNSQPMGTSGTTSTGLISPGVSVPVQ 420
Query: 407 VPGSEPDMSQYWPRLQ 422
VPGSEPDMSQYWPRLQ
Sbjct: 421 VPGSEPDMSQYWPRLQ 436
>gi|7524359 paired box 7 isoform 2 [Homo sapiens]
Length = 518
Score = 262 bits (669), Expect = 5e-70
Identities = 179/449 (39%), Positives = 230/449 (51%), Gaps = 81/449 (18%)
Query: 8 VNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRYYETGSIR 67
VNQLGGVF+NGRPLP+ R KIVE+AH G RPC ISR L+VS+GCVSKIL RY ETGSIR
Sbjct: 38 VNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIR 97
Query: 68 PRAIGGSKPR-VATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIPSVSSINRV 126
P AIGGSKPR VATP+V KI +YKRE P +F+WEIRDRLL +G C +PSVSSI+RV
Sbjct: 98 PGAIGGSKPRQVATPDVEKKIEEYKRENPGMFSWEIRDRLLKDGHCDRSTVPSVSSISRV 157
Query: 127 LRNLASEKQQMGADGMYDKLRMLNGQTGSWGTRPGWYPGTSVPGQPTQDGCQQQEGGGEN 186
LR +K++ +D ++E GE
Sbjct: 158 LRIKFGKKEE-------------------------------------EDEADKKEDDGEK 180
Query: 187 TNSISSNG----------EDSD-EAQMRLQLKRKLQRNRTSFTQEQIEALEKEFERTHYP 235
S +G E SD E++ L LKRK +R+RT+FT EQ+E LEK FERTHYP
Sbjct: 181 KAKHSIDGILGDKGNRLDEGSDVESEPDLPLKRKQRRSRTTFTAEQLEELEKAFERTHYP 240
Query: 236 DVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQASNTPSHIPISSSFSTSV 295
D++ RE LA + L EAR+QVWFSNRRA+WR++ P P + +
Sbjct: 241 DIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNHLLPGGFPPTGMPTLPP 300
Query: 296 YQPIPQPTTPVSSFT--SGSMLGRTD---------------TALTNTYSALPPMPSFTMA 338
YQ +P T P ++ + GS + R A +T SA SF+
Sbjct: 301 YQ-LPDSTYPTTTISQDGGSTVHRPQPLPPSTMHQGGLAAAAAAADTSSAYGARHSFSSY 359
Query: 339 NNLPMQPPVPSQTSS--YSCMLPTSPSVNGRSYDTYTPPHMQTHMNSQPM--GTSGTTST 394
++ M P PS + + + P S+ G + PP Q + P+ G TS
Sbjct: 360 SDSFMNPAAPSNHMNPVSNGLSPQVMSILGN--PSAVPPQPQADFSISPLHGGLDSATSI 417
Query: 395 GL--------ISPGVSVPVQVPGSEPDMS 415
I PG S+P P S
Sbjct: 418 SASCSQRADSIKPGDSLPTSQAYCPPTYS 446
>gi|188219638 paired box 3 isoform PAX3i [Homo sapiens]
Length = 483
Score = 259 bits (663), Expect = 2e-69
Identities = 166/409 (40%), Positives = 227/409 (55%), Gaps = 52/409 (12%)
Query: 8 VNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRYYETGSIR 67
VNQLGGVF+NGRPLP+ R KIVE+AH G RPC ISR L+VS+GCVSKIL RY ETGSIR
Sbjct: 38 VNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIR 97
Query: 68 PRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIPSVSSINRVL 127
P AIGGSKP+V TP+V KI +YKRE P +F+WEIRD+LL + VC + +PSVSSI+R+L
Sbjct: 98 PGAIGGSKPKVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRIL 157
Query: 128 RNLASEKQQMGADGMYDKLRMLNGQTGSWGTRPGWYPGTSVPGQPTQDGCQQQEGGGENT 187
R+ + ++ AD L + + + S+ G ++ Q
Sbjct: 158 RSKFGKGEEEEAD--------LERKEAEESEKKAKH---SIDGILSERASAPQ------- 199
Query: 188 NSISSNGEDSDEAQMRLQLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKI 247
S G D D ++ L LKRK +R+RT+FT EQ+E LE+ FERTHYPD++ RE LA +
Sbjct: 200 ---SDEGSDID-SEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRA 255
Query: 248 DLPEARIQVWFSNRRAKWRREEKLR-----NQRRQASNTPSHIPISSSF--STSVYQP-- 298
L EAR+QVWFSNRRA+WR++ N P+ +P ++ S + YQP
Sbjct: 256 KLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMPTLPTYQLSETSYQPTS 315
Query: 299 IPQPTTPVSSFTSGSMLGRTDTALTNTYSALPPMPSFTMANNLPMQPPVPSQTSSYSCML 358
IPQ + SS + P PS + +P P SS + L
Sbjct: 316 IPQAVSDPSS---------------TVHRPQPLPPSTVHQSTIPSNP-----DSSSAYCL 355
Query: 359 PTSPSVNGRSYDTYTPPHMQTHMNSQPMGTSGTTST-GLISPGVSVPVQ 406
P++ D++ PP ++ + +G + GL++ VP Q
Sbjct: 356 PSTRHGFSSYTDSFVPPSGPSNPMNPTIGNGLSPQVMGLLTNHGGVPHQ 404
>gi|4505619 paired box 7 isoform 1 [Homo sapiens]
Length = 520
Score = 257 bits (656), Expect = 2e-68
Identities = 179/451 (39%), Positives = 230/451 (50%), Gaps = 83/451 (18%)
Query: 8 VNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRYYETGSIR 67
VNQLGGVF+NGRPLP+ R KIVE+AH G RPC ISR L+VS+GCVSKIL RY ETGSIR
Sbjct: 38 VNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIR 97
Query: 68 PRAIGGSKPR-VATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIPS--VSSIN 124
P AIGGSKPR VATP+V KI +YKRE P +F+WEIRDRLL +G C +PS VSSI+
Sbjct: 98 PGAIGGSKPRQVATPDVEKKIEEYKRENPGMFSWEIRDRLLKDGHCDRSTVPSGLVSSIS 157
Query: 125 RVLRNLASEKQQMGADGMYDKLRMLNGQTGSWGTRPGWYPGTSVPGQPTQDGCQQQEGGG 184
RVLR +K++ +D ++E G
Sbjct: 158 RVLRIKFGKKEE-------------------------------------EDEADKKEDDG 180
Query: 185 ENTNSISSNG----------EDSD-EAQMRLQLKRKLQRNRTSFTQEQIEALEKEFERTH 233
E S +G E SD E++ L LKRK +R+RT+FT EQ+E LEK FERTH
Sbjct: 181 EKKAKHSIDGILGDKGNRLDEGSDVESEPDLPLKRKQRRSRTTFTAEQLEELEKAFERTH 240
Query: 234 YPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQASNTPSHIPISSSFST 293
YPD++ RE LA + L EAR+QVWFSNRRA+WR++ P P + +
Sbjct: 241 YPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNHLLPGGFPPTGMPTL 300
Query: 294 SVYQPIPQPTTPVSSFT--SGSMLGRTD---------------TALTNTYSALPPMPSFT 336
YQ +P T P ++ + GS + R A +T SA SF+
Sbjct: 301 PPYQ-LPDSTYPTTTISQDGGSTVHRPQPLPPSTMHQGGLAAAAAAADTSSAYGARHSFS 359
Query: 337 MANNLPMQPPVPSQTSS--YSCMLPTSPSVNGRSYDTYTPPHMQTHMNSQPM--GTSGTT 392
++ M P PS + + + P S+ G + PP Q + P+ G T
Sbjct: 360 SYSDSFMNPAAPSNHMNPVSNGLSPQVMSILGN--PSAVPPQPQADFSISPLHGGLDSAT 417
Query: 393 STGL--------ISPGVSVPVQVPGSEPDMS 415
S I PG S+P P S
Sbjct: 418 SISASCSQRADSIKPGDSLPTSQAYCPPTYS 448
>gi|207029223 paired box 7 isoform 3 [Homo sapiens]
Length = 505
Score = 257 bits (656), Expect = 2e-68
Identities = 179/451 (39%), Positives = 230/451 (50%), Gaps = 83/451 (18%)
Query: 8 VNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRYYETGSIR 67
VNQLGGVF+NGRPLP+ R KIVE+AH G RPC ISR L+VS+GCVSKIL RY ETGSIR
Sbjct: 38 VNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIR 97
Query: 68 PRAIGGSKPR-VATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIPS--VSSIN 124
P AIGGSKPR VATP+V KI +YKRE P +F+WEIRDRLL +G C +PS VSSI+
Sbjct: 98 PGAIGGSKPRQVATPDVEKKIEEYKRENPGMFSWEIRDRLLKDGHCDRSTVPSGLVSSIS 157
Query: 125 RVLRNLASEKQQMGADGMYDKLRMLNGQTGSWGTRPGWYPGTSVPGQPTQDGCQQQEGGG 184
RVLR +K++ +D ++E G
Sbjct: 158 RVLRIKFGKKEE-------------------------------------EDEADKKEDDG 180
Query: 185 ENTNSISSNG----------EDSD-EAQMRLQLKRKLQRNRTSFTQEQIEALEKEFERTH 233
E S +G E SD E++ L LKRK +R+RT+FT EQ+E LEK FERTH
Sbjct: 181 EKKAKHSIDGILGDKGNRLDEGSDVESEPDLPLKRKQRRSRTTFTAEQLEELEKAFERTH 240
Query: 234 YPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQASNTPSHIPISSSFST 293
YPD++ RE LA + L EAR+QVWFSNRRA+WR++ P P + +
Sbjct: 241 YPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNHLLPGGFPPTGMPTL 300
Query: 294 SVYQPIPQPTTPVSSFT--SGSMLGRTD---------------TALTNTYSALPPMPSFT 336
YQ +P T P ++ + GS + R A +T SA SF+
Sbjct: 301 PPYQ-LPDSTYPTTTISQDGGSTVHRPQPLPPSTMHQGGLAAAAAAADTSSAYGARHSFS 359
Query: 337 MANNLPMQPPVPSQTSS--YSCMLPTSPSVNGRSYDTYTPPHMQTHMNSQPM--GTSGTT 392
++ M P PS + + + P S+ G + PP Q + P+ G T
Sbjct: 360 SYSDSFMNPAAPSNHMNPVSNGLSPQVMSILGN--PSAVPPQPQADFSISPLHGGLDSAT 417
Query: 393 STGL--------ISPGVSVPVQVPGSEPDMS 415
S I PG S+P P S
Sbjct: 418 SISASCSQRADSIKPGDSLPTSQAYCPPTYS 448
>gi|31563344 paired box 3 isoform PAX3e [Homo sapiens]
Length = 505
Score = 255 bits (651), Expect = 6e-68
Identities = 166/410 (40%), Positives = 227/410 (55%), Gaps = 53/410 (12%)
Query: 8 VNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRYYETGSIR 67
VNQLGGVF+NGRPLP+ R KIVE+AH G RPC ISR L+VS+GCVSKIL RY ETGSIR
Sbjct: 38 VNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIR 97
Query: 68 PRAIGGSKPR-VATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIPSVSSINRV 126
P AIGGSKP+ V TP+V KI +YKRE P +F+WEIRD+LL + VC + +PSVSSI+R+
Sbjct: 98 PGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRI 157
Query: 127 LRNLASEKQQMGADGMYDKLRMLNGQTGSWGTRPGWYPGTSVPGQPTQDGCQQQEGGGEN 186
LR+ + ++ AD L + + + S+ G ++ Q
Sbjct: 158 LRSKFGKGEEEEAD--------LERKEAEESEKKAKH---SIDGILSERASAPQ------ 200
Query: 187 TNSISSNGEDSDEAQMRLQLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAK 246
S G D D ++ L LKRK +R+RT+FT EQ+E LE+ FERTHYPD++ RE LA +
Sbjct: 201 ----SDEGSDID-SEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQR 255
Query: 247 IDLPEARIQVWFSNRRAKWRREEKLR-----NQRRQASNTPSHIPISSSF--STSVYQP- 298
L EAR+QVWFSNRRA+WR++ N P+ +P ++ S + YQP
Sbjct: 256 AKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMPTLPTYQLSETSYQPT 315
Query: 299 -IPQPTTPVSSFTSGSMLGRTDTALTNTYSALPPMPSFTMANNLPMQPPVPSQTSSYSCM 357
IPQ + SS + P PS + +P P SS +
Sbjct: 316 SIPQAVSDPSS---------------TVHRPQPLPPSTVHQSTIPSNP-----DSSSAYC 355
Query: 358 LPTSPSVNGRSYDTYTPPHMQTHMNSQPMGTSGTTST-GLISPGVSVPVQ 406
LP++ D++ PP ++ + +G + GL++ VP Q
Sbjct: 356 LPSTRHGFSSYTDSFVPPSGPSNPMNPTIGNGLSPQVMGLLTNHGGVPHQ 405
>gi|31563342 paired box 3 isoform PAX3d [Homo sapiens]
Length = 484
Score = 255 bits (651), Expect = 6e-68
Identities = 166/410 (40%), Positives = 227/410 (55%), Gaps = 53/410 (12%)
Query: 8 VNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRYYETGSIR 67
VNQLGGVF+NGRPLP+ R KIVE+AH G RPC ISR L+VS+GCVSKIL RY ETGSIR
Sbjct: 38 VNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIR 97
Query: 68 PRAIGGSKPR-VATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIPSVSSINRV 126
P AIGGSKP+ V TP+V KI +YKRE P +F+WEIRD+LL + VC + +PSVSSI+R+
Sbjct: 98 PGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRI 157
Query: 127 LRNLASEKQQMGADGMYDKLRMLNGQTGSWGTRPGWYPGTSVPGQPTQDGCQQQEGGGEN 186
LR+ + ++ AD L + + + S+ G ++ Q
Sbjct: 158 LRSKFGKGEEEEAD--------LERKEAEESEKKAKH---SIDGILSERASAPQ------ 200
Query: 187 TNSISSNGEDSDEAQMRLQLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAK 246
S G D D ++ L LKRK +R+RT+FT EQ+E LE+ FERTHYPD++ RE LA +
Sbjct: 201 ----SDEGSDID-SEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQR 255
Query: 247 IDLPEARIQVWFSNRRAKWRREEKLR-----NQRRQASNTPSHIPISSSF--STSVYQP- 298
L EAR+QVWFSNRRA+WR++ N P+ +P ++ S + YQP
Sbjct: 256 AKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMPTLPTYQLSETSYQPT 315
Query: 299 -IPQPTTPVSSFTSGSMLGRTDTALTNTYSALPPMPSFTMANNLPMQPPVPSQTSSYSCM 357
IPQ + SS + P PS + +P P SS +
Sbjct: 316 SIPQAVSDPSS---------------TVHRPQPLPPSTVHQSTIPSNP-----DSSSAYC 355
Query: 358 LPTSPSVNGRSYDTYTPPHMQTHMNSQPMGTSGTTST-GLISPGVSVPVQ 406
LP++ D++ PP ++ + +G + GL++ VP Q
Sbjct: 356 LPSTRHGFSSYTDSFVPPSGPSNPMNPTIGNGLSPQVMGLLTNHGGVPHQ 405
>gi|31563340 paired box 3 isoform PAX3 [Homo sapiens]
Length = 479
Score = 255 bits (651), Expect = 6e-68
Identities = 166/410 (40%), Positives = 227/410 (55%), Gaps = 53/410 (12%)
Query: 8 VNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRYYETGSIR 67
VNQLGGVF+NGRPLP+ R KIVE+AH G RPC ISR L+VS+GCVSKIL RY ETGSIR
Sbjct: 38 VNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIR 97
Query: 68 PRAIGGSKPR-VATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIPSVSSINRV 126
P AIGGSKP+ V TP+V KI +YKRE P +F+WEIRD+LL + VC + +PSVSSI+R+
Sbjct: 98 PGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRI 157
Query: 127 LRNLASEKQQMGADGMYDKLRMLNGQTGSWGTRPGWYPGTSVPGQPTQDGCQQQEGGGEN 186
LR+ + ++ AD L + + + S+ G ++ Q
Sbjct: 158 LRSKFGKGEEEEAD--------LERKEAEESEKKAKH---SIDGILSERASAPQ------ 200
Query: 187 TNSISSNGEDSDEAQMRLQLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAK 246
S G D D ++ L LKRK +R+RT+FT EQ+E LE+ FERTHYPD++ RE LA +
Sbjct: 201 ----SDEGSDID-SEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQR 255
Query: 247 IDLPEARIQVWFSNRRAKWRREEKLR-----NQRRQASNTPSHIPISSSF--STSVYQP- 298
L EAR+QVWFSNRRA+WR++ N P+ +P ++ S + YQP
Sbjct: 256 AKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMPTLPTYQLSETSYQPT 315
Query: 299 -IPQPTTPVSSFTSGSMLGRTDTALTNTYSALPPMPSFTMANNLPMQPPVPSQTSSYSCM 357
IPQ + SS + P PS + +P P SS +
Sbjct: 316 SIPQAVSDPSS---------------TVHRPQPLPPSTVHQSTIPSNP-----DSSSAYC 355
Query: 358 LPTSPSVNGRSYDTYTPPHMQTHMNSQPMGTSGTTST-GLISPGVSVPVQ 406
LP++ D++ PP ++ + +G + GL++ VP Q
Sbjct: 356 LPSTRHGFSSYTDSFVPPSGPSNPMNPTIGNGLSPQVMGLLTNHGGVPHQ 405
>gi|31563348 paired box 3 isoform PAX3g [Homo sapiens]
Length = 403
Score = 254 bits (649), Expect = 1e-67
Identities = 160/378 (42%), Positives = 214/378 (56%), Gaps = 52/378 (13%)
Query: 8 VNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRYYETGSIR 67
VNQLGGVF+NGRPLP+ R KIVE+AH G RPC ISR L+VS+GCVSKIL RY ETGSIR
Sbjct: 38 VNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIR 97
Query: 68 PRAIGGSKPR-VATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIPSVSSINRV 126
P AIGGSKP+ V TP+V KI +YKRE P +F+WEIRD+LL + VC + +PSVSSI+R+
Sbjct: 98 PGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRI 157
Query: 127 LRNLASEKQQMGADGMYDKLRMLNGQTGSWGTRPGWYPGTSVPGQPTQDGCQQQEGGGEN 186
LR+ + ++ AD L + + + S+ G ++ Q
Sbjct: 158 LRSKFGKGEEEEAD--------LERKEAEESEKKAKH---SIDGILSERASAPQ------ 200
Query: 187 TNSISSNGEDSDEAQMRLQLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAK 246
S G D D ++ L LKRK +R+RT+FT EQ+E LE+ FERTHYPD++ RE LA +
Sbjct: 201 ----SDEGSDID-SEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQR 255
Query: 247 IDLPEARIQVWFSNRRAKWRREEKLR-----NQRRQASNTPSHIPISSSF--STSVYQP- 298
L EAR+QVWFSNRRA+WR++ N P+ +P ++ S + YQP
Sbjct: 256 AKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMPTLPTYQLSETSYQPT 315
Query: 299 -IPQPTTPVSSFTSGSMLGRTDTALTNTYSALPPMPSFTMANNLPMQPPVPSQTSSYSCM 357
IPQ + SS + P PS + +P P SS +
Sbjct: 316 SIPQAVSDPSS---------------TVHRPQPLPPSTVHQSTIPSNP-----DSSSAYC 355
Query: 358 LPTSPSVNGRSYDTYTPP 375
LP++ D++ PP
Sbjct: 356 LPSTRHGFSSYTDSFVPP 373
>gi|31563346 paired box 3 isoform PAX3h [Homo sapiens]
Length = 407
Score = 254 bits (649), Expect = 1e-67
Identities = 160/378 (42%), Positives = 214/378 (56%), Gaps = 52/378 (13%)
Query: 8 VNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRYYETGSIR 67
VNQLGGVF+NGRPLP+ R KIVE+AH G RPC ISR L+VS+GCVSKIL RY ETGSIR
Sbjct: 38 VNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIR 97
Query: 68 PRAIGGSKPR-VATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIPSVSSINRV 126
P AIGGSKP+ V TP+V KI +YKRE P +F+WEIRD+LL + VC + +PSVSSI+R+
Sbjct: 98 PGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRI 157
Query: 127 LRNLASEKQQMGADGMYDKLRMLNGQTGSWGTRPGWYPGTSVPGQPTQDGCQQQEGGGEN 186
LR+ + ++ AD L + + + S+ G ++ Q
Sbjct: 158 LRSKFGKGEEEEAD--------LERKEAEESEKKAKH---SIDGILSERASAPQ------ 200
Query: 187 TNSISSNGEDSDEAQMRLQLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAK 246
S G D D ++ L LKRK +R+RT+FT EQ+E LE+ FERTHYPD++ RE LA +
Sbjct: 201 ----SDEGSDID-SEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQR 255
Query: 247 IDLPEARIQVWFSNRRAKWRREEKLR-----NQRRQASNTPSHIPISSSF--STSVYQP- 298
L EAR+QVWFSNRRA+WR++ N P+ +P ++ S + YQP
Sbjct: 256 AKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMPTLPTYQLSETSYQPT 315
Query: 299 -IPQPTTPVSSFTSGSMLGRTDTALTNTYSALPPMPSFTMANNLPMQPPVPSQTSSYSCM 357
IPQ + SS + P PS + +P P SS +
Sbjct: 316 SIPQAVSDPSS---------------TVHRPQPLPPSTVHQSTIPSNP-----DSSSAYC 355
Query: 358 LPTSPSVNGRSYDTYTPP 375
LP++ D++ PP
Sbjct: 356 LPSTRHGFSSYTDSFVPP 373
>gi|170784824 paired box 4 [Homo sapiens]
Length = 343
Score = 244 bits (624), Expect = 8e-65
Identities = 139/269 (51%), Positives = 166/269 (61%), Gaps = 49/269 (18%)
Query: 8 VNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRYYETGSIR 67
+NQLGG+FVNGRPLP TRQ+IV LA SG RPCDISRIL+VSNGCVSKILGRYY TG +
Sbjct: 1 MNQLGGLFVNGRPLPLDTRQQIVRLAVSGMRPCDISRILKVSNGCVSKILGRYYRTGVLE 60
Query: 68 PRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIPSVSSINRVL 127
P+ IGGSKPR+ATP VV++IAQ K ECP++FAWEI+ +L +EG+CT D PSVSSINRVL
Sbjct: 61 PKGIGGSKPRLATPPVVARIAQLKGECPALFAWEIQRQLCAEGLCTQDKTPSVSSINRVL 120
Query: 128 RNLASEKQQMGADGMYDKL----RMLNGQTGSWGTRPGWYPGTSVPGQPTQDGCQQQEGG 183
R L E Q + + +L +GS T G +PGT
Sbjct: 121 RAL-QEDQGLPCTRLRSPAVLAPAVLTPHSGS-ETPRGTHPGTG---------------- 162
Query: 184 GENTNSISSNGEDSDEAQMRLQLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVFARERL 243
RNRT F+ Q EALEKEF+R YPD AR +L
Sbjct: 163 ---------------------------HRNRTIFSPSQAEALEKEFQRGQYPDSVARGKL 195
Query: 244 AAKIDLPEARIQVWFSNRRAKWRREEKLR 272
A LPE ++VWFSNRRAKWRR+EKL+
Sbjct: 196 ATATSLPEDTVRVWFSNRRAKWRRQEKLK 224
>gi|34878709 paired box protein 2 isoform c [Homo sapiens]
Length = 396
Score = 239 bits (611), Expect = 3e-63
Identities = 165/401 (41%), Positives = 211/401 (52%), Gaps = 42/401 (10%)
Query: 1 MQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRY 60
M H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+VS+GCVSKILGRY
Sbjct: 13 MHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRY 72
Query: 61 YETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIPSV 120
YETGSI+P IGGSKP+VATP+VV KIA+YKR+ P++FAWEIRDRLL+EG+C ND +PSV
Sbjct: 73 YETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSV 132
Query: 121 SSINRVLRNLASEKQQMGADGMYDKLRMLNGQTGSWGTRPGWYPGTSVP--GQPTQDGCQ 178
SSINR++R + DG G+ T PG T VP P
Sbjct: 133 SSINRIIRTKVQQPFHPTPDG-----------AGTGVTAPG---HTIVPSTASPPVSSAS 178
Query: 179 QQEGGGENTNSI----SSNGE----DSD---------EAQMRLQLKRKLQRNRTSFTQEQ 221
G + N I SNGE D D ++Q + RK R T FTQ+Q
Sbjct: 179 NDPVGSYSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSGVDSLRKHLRADT-FTQQQ 237
Query: 222 IEALEKEFERTHYPDVF-ARERLAA----KIDLPEARIQVWFSNRRAKWRREEKLRNQRR 276
+EAL++ FER YPDVF A E + + + LP + +L +
Sbjct: 238 LEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGLDEVKSSLSASTNPELGSNVS 297
Query: 277 QASNTPSHIPISSSFSTSVYQPIPQPTTPVSSFTSGSMLGRTDTALTNTYSALPPMPSFT 336
P + +T P P T S+ + ++ G A S+L P
Sbjct: 298 GTQTYPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAGMVPEAAVGPSSSLMSKPGRK 357
Query: 337 MANNLP-MQPPVPSQTSSYSCMLPTSPSVNGRSYDTYTPPH 376
+A P +QP S ++ + T P+ R D+ TPP+
Sbjct: 358 LAEVPPCVQPTGASSPATRTATPSTRPTT--RLGDSATPPY 396
>gi|34878716 paired box protein 2 isoform d [Homo sapiens]
Length = 408
Score = 235 bits (600), Expect = 5e-62
Identities = 137/257 (53%), Positives = 162/257 (63%), Gaps = 34/257 (13%)
Query: 1 MQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRY 60
M H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+VS+GCVSKILGRY
Sbjct: 13 MHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRY 72
Query: 61 YETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIPSV 120
YETGSI+P IGGSKP+VATP+VV KIA+YKR+ P++FAWEIRDRLL+EG+C ND +PSV
Sbjct: 73 YETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSV 132
Query: 121 SSINRVLRNLASEKQQMGADGMYDKLRMLNGQTGSWGTRPGWYPGTSVP--GQPTQDGCQ 178
SSINR++R + DG G+ T PG T VP P
Sbjct: 133 SSINRIIRTKVQQPFHPTPDG-----------AGTGVTAPG---HTIVPSTASPPVSSAS 178
Query: 179 QQEGGGENTNSI----SSNGE----DSD---------EAQMRLQLKRKLQRNRTSFTQEQ 221
G + N I SNGE D D ++Q + RK R T FTQ+Q
Sbjct: 179 NDPVGSYSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSGVDSLRKHLRADT-FTQQQ 237
Query: 222 IEALEKEFERTHYPDVF 238
+EAL++ FER YPDVF
Sbjct: 238 LEALDRVFERPSYPDVF 254
>gi|34878701 paired box protein 2 isoform b [Homo sapiens]
Length = 393
Score = 235 bits (600), Expect = 5e-62
Identities = 137/257 (53%), Positives = 162/257 (63%), Gaps = 34/257 (13%)
Query: 1 MQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRY 60
M H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+VS+GCVSKILGRY
Sbjct: 13 MHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRY 72
Query: 61 YETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIPSV 120
YETGSI+P IGGSKP+VATP+VV KIA+YKR+ P++FAWEIRDRLL+EG+C ND +PSV
Sbjct: 73 YETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSV 132
Query: 121 SSINRVLRNLASEKQQMGADGMYDKLRMLNGQTGSWGTRPGWYPGTSVP--GQPTQDGCQ 178
SSINR++R + DG G+ T PG T VP P
Sbjct: 133 SSINRIIRTKVQQPFHPTPDG-----------AGTGVTAPG---HTIVPSTASPPVSSAS 178
Query: 179 QQEGGGENTNSI----SSNGE----DSD---------EAQMRLQLKRKLQRNRTSFTQEQ 221
G + N I SNGE D D ++Q + RK R T FTQ+Q
Sbjct: 179 NDPVGSYSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSGVDSLRKHLRADT-FTQQQ 237
Query: 222 IEALEKEFERTHYPDVF 238
+EAL++ FER YPDVF
Sbjct: 238 LEALDRVFERPSYPDVF 254
>gi|34878699 paired box protein 2 isoform a [Homo sapiens]
Length = 416
Score = 229 bits (585), Expect = 3e-60
Identities = 134/277 (48%), Positives = 165/277 (59%), Gaps = 51/277 (18%)
Query: 1 MQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRY 60
M H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+VS+GCVSKILGRY
Sbjct: 13 MHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRY 72
Query: 61 YETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIPSV 120
YETGSI+P IGGSKP+VATP+VV KIA+YKR+ P++FAWEIRDRLL+EG+C ND +PSV
Sbjct: 73 YETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSV 132
Query: 121 SSINRVLRNLASEKQQMGADGMYDKLRMLNGQTGSWGTRPGW--YPGTSVP--------- 169
SSINR++R + DG G+ T PG P T+ P
Sbjct: 133 SSINRIIRTKVQQPFHPTPDG-----------AGTGVTAPGHTIVPSTASPPVSSASNDP 181
Query: 170 ----------GQPTQDGCQQQ-------------EGGGE-----NTNSISSNGEDSDEAQ 201
G P +G +++ GGG +S + ++Q
Sbjct: 182 VGSYSINGILGIPRSNGEKRKRDEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQ 241
Query: 202 MRLQLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVF 238
+ RK R T FTQ+Q+EAL++ FER YPDVF
Sbjct: 242 SGVDSLRKHLRADT-FTQQQLEALDRVFERPSYPDVF 277
>gi|34878703 paired box protein 2 isoform e [Homo sapiens]
Length = 431
Score = 229 bits (585), Expect = 3e-60
Identities = 134/277 (48%), Positives = 165/277 (59%), Gaps = 51/277 (18%)
Query: 1 MQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRY 60
M H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+VS+GCVSKILGRY
Sbjct: 13 MHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRY 72
Query: 61 YETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIPSV 120
YETGSI+P IGGSKP+VATP+VV KIA+YKR+ P++FAWEIRDRLL+EG+C ND +PSV
Sbjct: 73 YETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSV 132
Query: 121 SSINRVLRNLASEKQQMGADGMYDKLRMLNGQTGSWGTRPGW--YPGTSVP--------- 169
SSINR++R + DG G+ T PG P T+ P
Sbjct: 133 SSINRIIRTKVQQPFHPTPDG-----------AGTGVTAPGHTIVPSTASPPVSSASNDP 181
Query: 170 ----------GQPTQDGCQQQ-------------EGGGE-----NTNSISSNGEDSDEAQ 201
G P +G +++ GGG +S + ++Q
Sbjct: 182 VGSYSINGILGIPRSNGEKRKRDEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQ 241
Query: 202 MRLQLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVF 238
+ RK R T FTQ+Q+EAL++ FER YPDVF
Sbjct: 242 SGVDSLRKHLRADT-FTQQQLEALDRVFERPSYPDVF 277
>gi|5803117 paired box 8 isoform PAX8A [Homo sapiens]
Length = 450
Score = 227 bits (578), Expect = 2e-59
Identities = 154/411 (37%), Positives = 206/411 (50%), Gaps = 68/411 (16%)
Query: 1 MQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRY 60
+++ H G+NQLGG FVNGRPLP+ RQ+IV+LAH G RPCDISR L+VS+GCVSKILGRY
Sbjct: 6 IRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRY 65
Query: 61 YETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIPSV 120
YETGSIRP IGGSKP+VATP+VV KI YKR+ P++FAWEIRDRLL+EGVC ND +PSV
Sbjct: 66 YETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSV 125
Query: 121 SSINRVLRNLASEKQQMGADGMYDKLRMLNGQTGSWGTRPGWYPGTSV--PGQPTQDGCQ 178
SSINR++R + + D + G T P ++V P P D
Sbjct: 126 SSINRIIRTKVQQPFNLPMDSCVATKSLSPGHT--------LIPSSAVTPPESPQSDSLG 177
Query: 179 QQEG-----GGENTNSISSNGEDSDEAQMRLQLKRKLQRN------RT-SFTQEQIEALE 226
G S +DSD+ RL + + + RT +F+Q +E LE
Sbjct: 178 STYSINGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHLEPLE 237
Query: 227 KEFERTHYPDVFAR------ERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQASN 280
FER HYP+ +A E+ + L + + +A+
Sbjct: 238 CPFERQHYPEAYASPSHTKGEQGLYPLPLLNSTL-------------------DDGKATL 278
Query: 281 TPSHIPISSSFST-SVYQPIPQPTTPV-----------SSFTSGSMLGRTDTALTNTYSA 328
TPS+ P+ + ST Y + P +P SS T S+ L S
Sbjct: 279 TPSNTPLGRNLSTHQTYPVVADPHSPFAIKQETPEVSSSSSTPSSLSSSAFLDLQQVGSG 338
Query: 329 LPPMPSFTMANNLPMQPPVPSQTSSYSCMLPTSPSVNGRSYDTYTPPHMQT 379
+PP +F A ++ Q + S + PT P PPH+ T
Sbjct: 339 VPPFNAFPHAASVYGQFTGQALLSGREMVGPTLPGY---------PPHIPT 380
>gi|9951920 paired box 5 [Homo sapiens]
Length = 391
Score = 225 bits (573), Expect = 7e-59
Identities = 125/248 (50%), Positives = 158/248 (63%), Gaps = 22/248 (8%)
Query: 2 QNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRYY 61
+ H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+VS+GCVSKILGRYY
Sbjct: 14 RTGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYY 73
Query: 62 ETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIPSVS 121
ETGSI+P IGGSKP+VATP+VV KIA+YKR+ P++FAWEIRDRLL+E VC ND +PSVS
Sbjct: 74 ETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLAERVCDNDTVPSVS 133
Query: 122 SINRVLRN---------LASEKQQMGADGMYDKLRMLNGQTGSWGTRPGWYPGTSVPGQP 172
SINR++R + + + + G ++ ++ + G + P
Sbjct: 134 SINRIIRTKVQQPPNQPVPASSHSIVSTGSVTQVSSVSTDSAGSSYSISGILGITSPSAD 193
Query: 173 TQDGCQQQEGGGEN--TNSISSNGEDSDEAQMRLQLKRKLQRNRTSFTQEQIEALEKEFE 230
T ++ EG E+ N S G D QMR L FTQ+Q+E L++ FE
Sbjct: 194 TNKR-KRDEGIQESPVPNGHSLPGRDFLRKQMRGDL----------FTQQQLEVLDRVFE 242
Query: 231 RTHYPDVF 238
R HY D+F
Sbjct: 243 RQHYSDIF 250
>gi|7524365 paired box 8 isoform PAX8D [Homo sapiens]
Length = 321
Score = 222 bits (566), Expect = 4e-58
Identities = 123/253 (48%), Positives = 156/253 (61%), Gaps = 22/253 (8%)
Query: 1 MQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRY 60
+++ H G+NQLGG FVNGRPLP+ RQ+IV+LAH G RPCDISR L+VS+GCVSKILGRY
Sbjct: 6 IRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRY 65
Query: 61 YETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIPSV 120
YETGSIRP IGGSKP+VATP+VV KI YKR+ P++FAWEIRDRLL+EGVC ND +PSV
Sbjct: 66 YETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSV 125
Query: 121 SSINRVLRNLASEKQQMGADGMYDKLRMLNGQTGSWGTRPGWYPGTSV--PGQPTQDGCQ 178
SSINR++R + + D + G T P ++V P P D
Sbjct: 126 SSINRIIRTKVQQPFNLPMDSCVATKSLSPGHT--------LIPSSAVTPPESPQSDSLG 177
Query: 179 QQEG-----GGENTNSISSNGEDSDEAQMRLQLKRKLQRN------RT-SFTQEQIEALE 226
G S +DSD+ RL + + + RT +F+Q +E LE
Sbjct: 178 STYSINGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHLEPLE 237
Query: 227 KEFERTHYPDVFA 239
FER HYP+ +A
Sbjct: 238 CPFERQHYPEAYA 250
>gi|7669542 paired box 8 isoform PAX8E [Homo sapiens]
Length = 287
Score = 222 bits (566), Expect = 4e-58
Identities = 123/253 (48%), Positives = 156/253 (61%), Gaps = 22/253 (8%)
Query: 1 MQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRY 60
+++ H G+NQLGG FVNGRPLP+ RQ+IV+LAH G RPCDISR L+VS+GCVSKILGRY
Sbjct: 6 IRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRY 65
Query: 61 YETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIPSV 120
YETGSIRP IGGSKP+VATP+VV KI YKR+ P++FAWEIRDRLL+EGVC ND +PSV
Sbjct: 66 YETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSV 125
Query: 121 SSINRVLRNLASEKQQMGADGMYDKLRMLNGQTGSWGTRPGWYPGTSV--PGQPTQDGCQ 178
SSINR++R + + D + G T P ++V P P D
Sbjct: 126 SSINRIIRTKVQQPFNLPMDSCVATKSLSPGHT--------LIPSSAVTPPESPQSDSLG 177
Query: 179 QQEG-----GGENTNSISSNGEDSDEAQMRLQLKRKLQRN------RT-SFTQEQIEALE 226
G S +DSD+ RL + + + RT +F+Q +E LE
Sbjct: 178 STYSINGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHLEPLE 237
Query: 227 KEFERTHYPDVFA 239
FER HYP+ +A
Sbjct: 238 CPFERQHYPEAYA 250
>gi|7524363 paired box 8 isoform PAX8C [Homo sapiens]
Length = 398
Score = 222 bits (566), Expect = 4e-58
Identities = 123/253 (48%), Positives = 156/253 (61%), Gaps = 22/253 (8%)
Query: 1 MQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRY 60
+++ H G+NQLGG FVNGRPLP+ RQ+IV+LAH G RPCDISR L+VS+GCVSKILGRY
Sbjct: 6 IRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRY 65
Query: 61 YETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIPSV 120
YETGSIRP IGGSKP+VATP+VV KI YKR+ P++FAWEIRDRLL+EGVC ND +PSV
Sbjct: 66 YETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSV 125
Query: 121 SSINRVLRNLASEKQQMGADGMYDKLRMLNGQTGSWGTRPGWYPGTSV--PGQPTQDGCQ 178
SSINR++R + + D + G T P ++V P P D
Sbjct: 126 SSINRIIRTKVQQPFNLPMDSCVATKSLSPGHT--------LIPSSAVTPPESPQSDSLG 177
Query: 179 QQEG-----GGENTNSISSNGEDSDEAQMRLQLKRKLQRN------RT-SFTQEQIEALE 226
G S +DSD+ RL + + + RT +F+Q +E LE
Sbjct: 178 STYSINGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHLEPLE 237
Query: 227 KEFERTHYPDVFA 239
FER HYP+ +A
Sbjct: 238 CPFERQHYPEAYA 250
>gi|7524361 paired box 8 isoform PAX8B [Homo sapiens]
Length = 387
Score = 222 bits (566), Expect = 4e-58
Identities = 123/253 (48%), Positives = 156/253 (61%), Gaps = 22/253 (8%)
Query: 1 MQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRY 60
+++ H G+NQLGG FVNGRPLP+ RQ+IV+LAH G RPCDISR L+VS+GCVSKILGRY
Sbjct: 6 IRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRY 65
Query: 61 YETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIPSV 120
YETGSIRP IGGSKP+VATP+VV KI YKR+ P++FAWEIRDRLL+EGVC ND +PSV
Sbjct: 66 YETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSV 125
Query: 121 SSINRVLRNLASEKQQMGADGMYDKLRMLNGQTGSWGTRPGWYPGTSV--PGQPTQDGCQ 178
SSINR++R + + D + G T P ++V P P D
Sbjct: 126 SSINRIIRTKVQQPFNLPMDSCVATKSLSPGHT--------LIPSSAVTPPESPQSDSLG 177
Query: 179 QQEG-----GGENTNSISSNGEDSDEAQMRLQLKRKLQRN------RT-SFTQEQIEALE 226
G S +DSD+ RL + + + RT +F+Q +E LE
Sbjct: 178 STYSINGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHLEPLE 237
Query: 227 KEFERTHYPDVFA 239
FER HYP+ +A
Sbjct: 238 CPFERQHYPEAYA 250
>gi|197276661 paired box 1 [Homo sapiens]
Length = 534
Score = 182 bits (463), Expect = 4e-46
Identities = 92/138 (66%), Positives = 106/138 (76%)
Query: 1 MQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRY 60
M+ ++ VNQLGGVFVNGRPLP++ R +IVELA G RPCDISR L+VS+GCVSKIL RY
Sbjct: 95 MEQTYGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARY 154
Query: 61 YETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIPSV 120
ETGSI P AIGGSKPRV TP VV I YK+ P IFAWEIRDRLL++GVC N+PSV
Sbjct: 155 NETGSILPGAIGGSKPRVTTPNVVKHIRDYKQGDPGIFAWEIRDRLLADGVCDKYNVPSV 214
Query: 121 SSINRVLRNLASEKQQMG 138
SSI+R+LRN Q G
Sbjct: 215 SSISRILRNKIGSLAQPG 232
>gi|7242167 paired box 9 [Homo sapiens]
Length = 341
Score = 181 bits (460), Expect = 8e-46
Identities = 92/138 (66%), Positives = 105/138 (76%)
Query: 1 MQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRY 60
M+ + VNQLGGVFVNGRPLP++ R +IVELA G RPCDISR L+VS+GCVSKIL RY
Sbjct: 1 MEPAFGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARY 60
Query: 61 YETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIPSV 120
ETGSI P AIGGSKPRV TP VV I YK+ P IFAWEIRDRLL++GVC N+PSV
Sbjct: 61 NETGSILPGAIGGSKPRVTTPTVVKHIRTYKQRDPGIFAWEIRDRLLADGVCDKYNVPSV 120
Query: 121 SSINRVLRNLASEKQQMG 138
SSI+R+LRN Q G
Sbjct: 121 SSISRILRNKIGNLAQQG 138
>gi|7524356 paired box 3 isoform PAX3b [Homo sapiens]
Length = 206
Score = 173 bits (439), Expect = 2e-43
Identities = 86/134 (64%), Positives = 106/134 (79%), Gaps = 1/134 (0%)
Query: 8 VNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRYYETGSIR 67
VNQLGGVF+NGRPLP+ R KIVE+AH G RPC ISR L+VS+GCVSKIL RY ETGSIR
Sbjct: 38 VNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIR 97
Query: 68 PRAIGGSKPR-VATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIPSVSSINRV 126
P AIGGSKP+ V TP+V KI +YKRE P +F+WEIRD+LL + VC + +PSVSSI+R+
Sbjct: 98 PGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRI 157
Query: 127 LRNLASEKQQMGAD 140
LR+ + ++ AD
Sbjct: 158 LRSKFGKGEEEEAD 171
>gi|6654638 paired box 3 isoform PAX3a [Homo sapiens]
Length = 215
Score = 173 bits (439), Expect = 2e-43
Identities = 86/134 (64%), Positives = 106/134 (79%), Gaps = 1/134 (0%)
Query: 8 VNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRYYETGSIR 67
VNQLGGVF+NGRPLP+ R KIVE+AH G RPC ISR L+VS+GCVSKIL RY ETGSIR
Sbjct: 38 VNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIR 97
Query: 68 PRAIGGSKPR-VATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIPSVSSINRV 126
P AIGGSKP+ V TP+V KI +YKRE P +F+WEIRD+LL + VC + +PSVSSI+R+
Sbjct: 98 PGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRI 157
Query: 127 LRNLASEKQQMGAD 140
LR+ + ++ AD
Sbjct: 158 LRSKFGKGEEEEAD 171
>gi|126116581 retina and anterior neural fold homeobox [Homo
sapiens]
Length = 346
Score = 109 bits (273), Expect = 4e-24
Identities = 69/164 (42%), Positives = 90/164 (54%), Gaps = 12/164 (7%)
Query: 205 QLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAK 264
Q K+K +RNRT+FT Q+ LE+ FE++HYPDV++RE LA K++LPE R+QVWF NRRAK
Sbjct: 131 QPKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQNRRAK 190
Query: 265 WRREEKLRNQRRQASNTPSHIPISSSFSTSVYQPIPQPTTPVSSFTSGSMLGRTDTALTN 324
WRR+EKL + ++P SFS S P T GS G AL
Sbjct: 191 WRRQEKLEVSSMKLQDSP-----LLSFSRSP----PSATLSPLGAGPGSGGGPAGGALPL 241
Query: 325 TYSALPPMP--SFTMANNLP-MQPPVPSQTSSYSCMLPTSPSVN 365
PP+P T +LP PP S +SY+ P P +N
Sbjct: 242 ESWLGPPLPGGGATALQSLPGFGPPAQSLPASYTPPPPPPPFLN 285
>gi|12707577 paired mesoderm homeobox 1 isoform pmx-1b [Homo
sapiens]
Length = 245
Score = 108 bits (270), Expect = 9e-24
Identities = 66/159 (41%), Positives = 91/159 (57%), Gaps = 14/159 (8%)
Query: 187 TNSISSNGEDSDEAQMRLQLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAK 246
T+ + +D+D+ + KRK +RNRT+F Q++ALE+ FERTHYPD F RE LA +
Sbjct: 71 TSGSDTPQQDNDQLNSEEKKKRKQRRNRTTFNSSQLQALERVFERTHYPDAFVREDLARR 130
Query: 247 IDLPEARIQVWFSNRRAKWRREEKLRNQRRQASNTPSHIPISSSFSTSVYQPI-PQPTTP 305
++L EAR+QVWF NRRAK+RR E+ + AS S+ S T+V QPI P+P
Sbjct: 131 VNLTEARVQVWFQNRRAKFRRNERAMLANKNASLLKSY----SGDVTAVEQPIVPRPAPR 186
Query: 306 VSSFTSGSMLGRTDTALTNTYSALPPMPSFTMANNLPMQ 344
+ + S + YSA+ S T ANN P Q
Sbjct: 187 PTDYLS--------WGTASPYSAMATY-SATCANNSPAQ 216
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.129 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,464,370
Number of Sequences: 37866
Number of extensions: 957231
Number of successful extensions: 4624
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 308
Number of HSP's successfully gapped in prelim test: 225
Number of HSP's that attempted gapping in prelim test: 3602
Number of HSP's gapped (non-prelim): 1062
length of query: 422
length of database: 18,247,518
effective HSP length: 105
effective length of query: 317
effective length of database: 14,271,588
effective search space: 4524093396
effective search space used: 4524093396
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.