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Search of human proteins with 4505243
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4505243 myelin protein zero [Homo sapiens]
(258 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4505243 myelin protein zero [Homo sapiens] 524 e-149
gi|4506357 myelin protein zero-like 1 isoform a [Homo sapiens] 133 1e-31
gi|46358426 myelin protein zero-like 1 isoform b [Homo sapiens] 124 6e-29
gi|38093645 myelin protein zero-like 3 [Homo sapiens] 104 7e-23
gi|21536337 myelin protein zero-like 2 precursor [Homo sapiens] 102 4e-22
gi|5032247 myelin protein zero-like 2 precursor [Homo sapiens] 102 4e-22
gi|4759066 sodium channel, voltage-gated, type II, beta [Homo sa... 66 3e-11
gi|32699028 V-set and immunoglobulin domain containing 1 [Homo s... 64 1e-10
gi|9055238 voltage-gated sodium channel beta-3 subunit precursor... 62 6e-10
gi|93587332 voltage-gated sodium channel beta-3 subunit precurso... 62 6e-10
gi|28372555 sodium channel, voltage-gated, type IV, beta isoform... 61 1e-09
gi|42560233 poliovirus receptor-related 1 isoform 3 [Homo sapiens] 53 3e-07
gi|42560231 poliovirus receptor-related 1 isoform 2 [Homo sapiens] 53 3e-07
gi|42560237 poliovirus receptor-related 1 isoform 1 [Homo sapiens] 53 3e-07
gi|215272334 sodium channel, voltage-gated, type IV, beta isofor... 49 3e-06
gi|148664224 adhesion molecule, interacts with CXADR antigen 1 i... 49 3e-06
gi|148664207 adhesion molecule, interacts with CXADR antigen 1 i... 49 3e-06
gi|4506805 sodium channel, voltage-gated, type I, beta isoform a... 47 2e-05
gi|62865876 immunoglobulin superfamily, member 11 isoform b [Hom... 46 3e-05
gi|148664211 immunoglobulin superfamily, member 4D isoform 2 [Ho... 45 8e-05
gi|4503173 coxsackie virus and adenovirus receptor precursor [Ho... 43 3e-04
gi|62865874 immunoglobulin superfamily, member 11 isoform a [Hom... 42 4e-04
gi|21361429 V-set and immunoglobulin domain containing 2 [Homo s... 42 5e-04
gi|5360210 poliovirus receptor related 2 isoform alpha precursor... 42 7e-04
gi|112789532 poliovirus receptor related 2 isoform delta precurs... 42 7e-04
gi|15826840 PTK7 protein tyrosine kinase 7 isoform a precursor [... 42 7e-04
gi|22902128 PTK7 protein tyrosine kinase 7 isoform c precursor [... 42 7e-04
gi|22902126 PTK7 protein tyrosine kinase 7 isoform b precursor [... 42 7e-04
gi|5921461 butyrophilin, subfamily 2, member A1 isoform 1 precur... 41 0.001
gi|17975772 butyrophilin, subfamily 2, member A1 isoform 2 precu... 41 0.001
>gi|4505243 myelin protein zero [Homo sapiens]
Length = 258
Score = 524 bits (1350), Expect = e-149
Identities = 258/258 (100%), Positives = 258/258 (100%)
Query: 1 MLRAPAPAPAMAPGAPSSSPSPILAVLLFSSLVLSPAQAIVVYTDREVHGAVGSRVTLHC 60
MLRAPAPAPAMAPGAPSSSPSPILAVLLFSSLVLSPAQAIVVYTDREVHGAVGSRVTLHC
Sbjct: 1 MLRAPAPAPAMAPGAPSSSPSPILAVLLFSSLVLSPAQAIVVYTDREVHGAVGSRVTLHC 60
Query: 61 SFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPRWKDG 120
SFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPRWKDG
Sbjct: 61 SFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPRWKDG 120
Query: 121 SIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVFEKVPTRYGVVLGAVIGGVLGVVL 180
SIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVFEKVPTRYGVVLGAVIGGVLGVVL
Sbjct: 121 SIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVFEKVPTRYGVVLGAVIGGVLGVVL 180
Query: 181 LLLLLFYVVRYCWLRRQAALQRRLSAMEKGKLHKPGKDASKRGRQTPVLYAMLDHSRSTK 240
LLLLLFYVVRYCWLRRQAALQRRLSAMEKGKLHKPGKDASKRGRQTPVLYAMLDHSRSTK
Sbjct: 181 LLLLLFYVVRYCWLRRQAALQRRLSAMEKGKLHKPGKDASKRGRQTPVLYAMLDHSRSTK 240
Query: 241 AVSEKKAKGLGESRKDKK 258
AVSEKKAKGLGESRKDKK
Sbjct: 241 AVSEKKAKGLGESRKDKK 258
>gi|4506357 myelin protein zero-like 1 isoform a [Homo sapiens]
Length = 269
Score = 133 bits (335), Expect = 1e-31
Identities = 85/232 (36%), Positives = 119/232 (51%), Gaps = 25/232 (10%)
Query: 23 ILAVLLFSSLVLSPAQAIVVYTDREVHGAVGSRVTLHCSFWSSEWVSDDISFTWRYQPEG 82
+LA L L+ + A+ VYT +E+ A G++ L C F S+ S +W +QPEG
Sbjct: 23 VLAAAL--GLLTAGVSALEVYTPKEIFVANGTQGKLTCKFKSTSTTGGLTSVSWSFQPEG 80
Query: 83 GRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPRWKDGSIVIHNLDYSDNGTFTCDVKNP 142
+S FHY++GQ Y+ FK+RI W GD KD SI I N+ + NGT+ CDVKNP
Sbjct: 81 ADTTVSFFHYSQGQVYLGNYPPFKDRISWAGDLDKKDASINIENMQFIHNGTYICDVKNP 140
Query: 143 PDIVGKTSQVTLYVFEK--VPT-RYGVVLGAVIGGVLGVVLLLLLLFYVVRYCWLRRQAA 199
PDIV + + LYV EK +P VV+G V VLG+ LL+ ++ V L R+
Sbjct: 141 PDIVVQPGHIRLYVVEKENLPVFPVWVVVGIVTAVVLGLTLLISMILAV-----LYRRKN 195
Query: 200 LQRRLSAMEKGKLHKPGKDASKR---------------GRQTPVLYAMLDHS 236
+R + + P K A ++ Q PV+YA LDHS
Sbjct: 196 SKRDYTGCSTSESLSPVKQAPRKSPSDTEGLVKSLPSGSHQGPVIYAQLDHS 247
>gi|46358426 myelin protein zero-like 1 isoform b [Homo sapiens]
Length = 209
Score = 124 bits (312), Expect = 6e-29
Identities = 70/170 (41%), Positives = 98/170 (57%), Gaps = 5/170 (2%)
Query: 23 ILAVLLFSSLVLSPAQAIVVYTDREVHGAVGSRVTLHCSFWSSEWVSDDISFTWRYQPEG 82
+LA L L+ + A+ VYT +E+ A G++ L C F S+ S +W +QPEG
Sbjct: 23 VLAAAL--GLLTAGVSALEVYTPKEIFVANGTQGKLTCKFKSTSTTGGLTSVSWSFQPEG 80
Query: 83 GRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPRWKDGSIVIHNLDYSDNGTFTCDVKNP 142
+S FHY++GQ Y+ FK+RI W GD KD SI I N+ + NGT+ CDVKNP
Sbjct: 81 ADTTVSFFHYSQGQVYLGNYPPFKDRISWAGDLDKKDASINIENMQFIHNGTYICDVKNP 140
Query: 143 PDIVGKTSQVTLYVFEK--VPT-RYGVVLGAVIGGVLGVVLLLLLLFYVV 189
PDIV + + LYV EK +P VV+G V VLG+ LL+ ++ V+
Sbjct: 141 PDIVVQPGHIRLYVVEKENLPVFPVWVVVGIVTAVVLGLTLLISMILAVL 190
>gi|38093645 myelin protein zero-like 3 [Homo sapiens]
Length = 235
Score = 104 bits (260), Expect = 7e-23
Identities = 63/175 (36%), Positives = 91/175 (52%), Gaps = 13/175 (7%)
Query: 12 APGAPSSSPSPILAVLLFSSLVLSPAQAIVVYTDREVHGAVGSRVTLHCSFWSSEWVSDD 71
A G+ + P+L VL F + + ++ + D V G VG ++ L C+F S+ V+D
Sbjct: 6 AAGSRGCALFPLLGVLFFQGVYI--VFSLEIRADAHVRGYVGEKIKLKCTFKSTSDVTDK 63
Query: 72 ISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPRWKDGSIVIHNLDYSD 131
++ W Y+P +SIFHY Q Y GTF++RI WVG+ D SI I N D
Sbjct: 64 LTIDWTYRPPSSSHTVSIFHYQSFQ-YPTTAGTFRDRISWVGNVYKGDASISISNPTIKD 122
Query: 132 NGTFTCDVKNPPDIVGKTSQVTLYVFEKVPTRYGVVLGAVIGGVLGVVLLLLLLF 186
NGTF+C VKNPPD+ L V E+ +G +L + V LL +L+F
Sbjct: 123 NGTFSCAVKNPPDVHHNIPMTELTVTER---GFGTMLSS-------VALLSILVF 167
>gi|21536337 myelin protein zero-like 2 precursor [Homo sapiens]
Length = 215
Score = 102 bits (253), Expect = 4e-22
Identities = 56/181 (30%), Positives = 92/181 (50%), Gaps = 1/181 (0%)
Query: 18 SSPSPILAVLLFSSLVLSPAQAIVVYTDREVHGAVGSRVTLHCSFWSSEWVSDDISFTWR 77
SS +L +L L P A+ +YT R + G+ L C+F S V D ++ TW
Sbjct: 5 SSTRAVLLLLGIQLTALWPIAAVEIYTSRVLEAVNGTDARLKCTFSSFAPVGDALTVTWN 64
Query: 78 YQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPRWKDGSIVIHNLDYSDNGTFTC 137
++P G +F+Y P+ G FK+R+ W G+P D SI++ L + DNGT+TC
Sbjct: 65 FRPLDGGPEQFVFYYHI-DPFQPMSGRFKDRVSWDGNPERYDASILLWKLQFDDNGTYTC 123
Query: 138 DVKNPPDIVGKTSQVTLYVFEKVPTRYGVVLGAVIGGVLGVVLLLLLLFYVVRYCWLRRQ 197
VKNPPD+ G ++ L V V L IG ++++++++ + ++ +R
Sbjct: 124 QVKNPPDVDGVIGEIRLSVVHTVRFSEIHFLALAIGSACALMIIIVIVVVLFQHYRKKRW 183
Query: 198 A 198
A
Sbjct: 184 A 184
>gi|5032247 myelin protein zero-like 2 precursor [Homo sapiens]
Length = 215
Score = 102 bits (253), Expect = 4e-22
Identities = 56/181 (30%), Positives = 92/181 (50%), Gaps = 1/181 (0%)
Query: 18 SSPSPILAVLLFSSLVLSPAQAIVVYTDREVHGAVGSRVTLHCSFWSSEWVSDDISFTWR 77
SS +L +L L P A+ +YT R + G+ L C+F S V D ++ TW
Sbjct: 5 SSTRAVLLLLGIQLTALWPIAAVEIYTSRVLEAVNGTDARLKCTFSSFAPVGDALTVTWN 64
Query: 78 YQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPRWKDGSIVIHNLDYSDNGTFTC 137
++P G +F+Y P+ G FK+R+ W G+P D SI++ L + DNGT+TC
Sbjct: 65 FRPLDGGPEQFVFYYHI-DPFQPMSGRFKDRVSWDGNPERYDASILLWKLQFDDNGTYTC 123
Query: 138 DVKNPPDIVGKTSQVTLYVFEKVPTRYGVVLGAVIGGVLGVVLLLLLLFYVVRYCWLRRQ 197
VKNPPD+ G ++ L V V L IG ++++++++ + ++ +R
Sbjct: 124 QVKNPPDVDGVIGEIRLSVVHTVRFSEIHFLALAIGSACALMIIIVIVVVLFQHYRKKRW 183
Query: 198 A 198
A
Sbjct: 184 A 184
>gi|4759066 sodium channel, voltage-gated, type II, beta [Homo
sapiens]
Length = 215
Score = 65.9 bits (159), Expect = 3e-11
Identities = 55/194 (28%), Positives = 93/194 (47%), Gaps = 9/194 (4%)
Query: 28 LFSSLVLSPAQAIVVYTDREVHGAVGSRVTLHCSFWSSEWVSD-DISFTWRYQPEGGRDA 86
LF SLV P +++ V ++ GS L C+F S V+ S W YQ E +
Sbjct: 19 LFFSLV-PPGRSMEVTVPATLNVLNGSDARLPCTFNSCYTVNHKQFSLNWTYQ-ECNNCS 76
Query: 87 ISIFHYAKGQPYIDEVGTFKERIQWVGDPRWKDGSIVIHNLDYSDNGTFTCDVKNPPDIV 146
+F + + ++ F++R+++ G+P D S+++ N+ D G + C + NPPD
Sbjct: 77 EEMFLQFRMKIINLKLERFQDRVEFSGNPSKYDVSVMLRNVQPEDEGIYNCYIMNPPDRH 136
Query: 147 GKTSQVTLYVFEKVP----TRYGVVLGAVIGGVLGVVLLLLLLFYVVRYCWLRRQAALQR 202
++ L V + P + V++GA +GG L VV+L+L++ VR + Q
Sbjct: 137 RGHGKIHLQVLMEEPPERDSTVAVIVGASVGGFLAVVILVLMVVKCVRR--KKEQKLSTD 194
Query: 203 RLSAMEKGKLHKPG 216
L E+GK G
Sbjct: 195 DLKTEEEGKTDGEG 208
>gi|32699028 V-set and immunoglobulin domain containing 1 [Homo
sapiens]
Length = 387
Score = 63.9 bits (154), Expect = 1e-10
Identities = 40/126 (31%), Positives = 63/126 (50%), Gaps = 4/126 (3%)
Query: 27 LLFSSLVLSPAQAIVVYTDREVHGAVGSRVTLHCSFWSSEWVSDDISFTWRYQPEGGRDA 86
L+ S L + V D V+ VGS VTL C + ++ + +S W + + +
Sbjct: 10 LILSCLAGQVSVVQVTIPDGFVNVTVGSNVTLICIYTTTVASREQLSIQWSFFHKKEMEP 69
Query: 87 ISIFHYAKGQPYIDEVGTFKERIQWVGDPRWKDGSIVIHNLDYSDNGTFTCDVKNPPDIV 146
ISI+ GQ +G FK+RI DP + SI I ++ +D+G + CDV NPPD +
Sbjct: 70 ISIYFSQGGQAVA--IGQFKDRITGSNDPG--NASITISHMQPADSGIYICDVNNPPDFL 125
Query: 147 GKTSQV 152
G+ +
Sbjct: 126 GQNQGI 131
>gi|9055238 voltage-gated sodium channel beta-3 subunit precursor
[Homo sapiens]
Length = 215
Score = 61.6 bits (148), Expect = 6e-10
Identities = 46/161 (28%), Positives = 75/161 (46%), Gaps = 11/161 (6%)
Query: 40 IVVYTDREVHGAVGSRVTLHC-SFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPY 98
+ V E G+ + L C S E V W Y+PEGG+D + I+ Y G
Sbjct: 25 VCVEVPSETEAVQGNPMKLRCISCMKREEVEATTVVEWFYRPEGGKDFL-IYEYRNGHQE 83
Query: 99 IDEVGTFKERIQWVGDPRWKDGSIVIHNLDYSDNGTFTCDVKNPPD------IVGKTSQV 152
++ F+ R+QW G +D SI + N+ +D+G +TC+V + V T +
Sbjct: 84 VES--PFQGRLQWNGSKDLQDVSITVLNVTLNDSGLYTCNVSREFEFEAHRPFVKTTRLI 141
Query: 153 TLYVFEKVPTRYGVVLGAVIGGVLGVVLLLLLLFYVVRYCW 193
L V E+ + V+ ++ +L V L L LL ++ YC+
Sbjct: 142 PLRVTEEAGEDFTSVVSEIMMYILLVFLTLWLLIEMI-YCY 181
>gi|93587332 voltage-gated sodium channel beta-3 subunit precursor
[Homo sapiens]
Length = 215
Score = 61.6 bits (148), Expect = 6e-10
Identities = 46/161 (28%), Positives = 75/161 (46%), Gaps = 11/161 (6%)
Query: 40 IVVYTDREVHGAVGSRVTLHC-SFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPY 98
+ V E G+ + L C S E V W Y+PEGG+D + I+ Y G
Sbjct: 25 VCVEVPSETEAVQGNPMKLRCISCMKREEVEATTVVEWFYRPEGGKDFL-IYEYRNGHQE 83
Query: 99 IDEVGTFKERIQWVGDPRWKDGSIVIHNLDYSDNGTFTCDVKNPPD------IVGKTSQV 152
++ F+ R+QW G +D SI + N+ +D+G +TC+V + V T +
Sbjct: 84 VES--PFQGRLQWNGSKDLQDVSITVLNVTLNDSGLYTCNVSREFEFEAHRPFVKTTRLI 141
Query: 153 TLYVFEKVPTRYGVVLGAVIGGVLGVVLLLLLLFYVVRYCW 193
L V E+ + V+ ++ +L V L L LL ++ YC+
Sbjct: 142 PLRVTEEAGEDFTSVVSEIMMYILLVFLTLWLLIEMI-YCY 181
>gi|28372555 sodium channel, voltage-gated, type IV, beta isoform 1
precursor [Homo sapiens]
Length = 228
Score = 60.8 bits (146), Expect = 1e-09
Identities = 57/193 (29%), Positives = 92/193 (47%), Gaps = 31/193 (16%)
Query: 13 PGAPSSSPSPI------LAVLLFSSLVLSPAQAIVVYTDREVHGAVGSRVTLHCSFWSSE 66
PGA +P L L + LS ++ TD ++ G+ + L C+F SS
Sbjct: 2 PGAGDGGKAPARWLGTGLLGLFLLPVTLSLEVSVGKATD--IYAVNGTEILLPCTF-SSC 58
Query: 67 WVSDDISFTWRYQPEGGRDAISIF-----HYAKGQPYIDEVGTFKE--RIQWVGDPRWKD 119
+ +D+ F W Y DA I K P + T K+ RI VG + K
Sbjct: 59 FGFEDLHFRWTYNSS---DAFKILIEGTVKNEKSDPKV----TLKDDDRITLVGSTKEKM 111
Query: 120 G--SIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYV-----FEKVPTRYGVVLGAVI 172
SIV+ +L++SD G +TC VKNP + T+++ E+V +++ AV+
Sbjct: 112 NNISIVLRDLEFSDTGKYTCHVKNPKE-NNLQHHATIFLQVVDRLEEVDNTVTLIILAVV 170
Query: 173 GGVLGVVLLLLLL 185
GGV+G+++L+LL+
Sbjct: 171 GGVIGLLILILLI 183
>gi|42560233 poliovirus receptor-related 1 isoform 3 [Homo sapiens]
Length = 352
Score = 52.8 bits (125), Expect = 3e-07
Identities = 33/124 (26%), Positives = 63/124 (50%), Gaps = 6/124 (4%)
Query: 41 VVYTDREVHGAVGSRVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYID 100
VV + ++G +G+ V LHCSF + TW+ G + ++I++ + G +
Sbjct: 32 VVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMG---VS 88
Query: 101 EVGTFKERIQWVGDPRWKDGSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVFEKV 160
+ ++ER++++ P + DG+I + L+ D G + C+ P + SQ+ L V K
Sbjct: 89 VLAPYRERVEFL-RPSFTDGTIRLSRLELEDEGVYICEFATFP-TGNRESQLNLTVMAK- 145
Query: 161 PTRY 164
PT +
Sbjct: 146 PTNW 149
>gi|42560231 poliovirus receptor-related 1 isoform 2 [Homo sapiens]
Length = 458
Score = 52.8 bits (125), Expect = 3e-07
Identities = 33/124 (26%), Positives = 63/124 (50%), Gaps = 6/124 (4%)
Query: 41 VVYTDREVHGAVGSRVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYID 100
VV + ++G +G+ V LHCSF + TW+ G + ++I++ + G +
Sbjct: 32 VVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMG---VS 88
Query: 101 EVGTFKERIQWVGDPRWKDGSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVFEKV 160
+ ++ER++++ P + DG+I + L+ D G + C+ P + SQ+ L V K
Sbjct: 89 VLAPYRERVEFL-RPSFTDGTIRLSRLELEDEGVYICEFATFP-TGNRESQLNLTVMAK- 145
Query: 161 PTRY 164
PT +
Sbjct: 146 PTNW 149
Score = 29.6 bits (65), Expect = 2.7
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 127 LDYSDNGTFTCDVKNPPDIVGKTSQVTLYVFEKVPTRYGVVLGA-VIGGVLGVVLLLLLL 185
++YS GT+ C+ NP I ++ QV + + EK + G+ A ++ G + V L+L+ +
Sbjct: 306 INYSLAGTYICEATNP--IGTRSGQVEVNITEKPRPQRGLGSAARLLAGTVAVFLILVAV 363
Query: 186 FYV 188
V
Sbjct: 364 LTV 366
>gi|42560237 poliovirus receptor-related 1 isoform 1 [Homo sapiens]
Length = 517
Score = 52.8 bits (125), Expect = 3e-07
Identities = 33/124 (26%), Positives = 63/124 (50%), Gaps = 6/124 (4%)
Query: 41 VVYTDREVHGAVGSRVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYID 100
VV + ++G +G+ V LHCSF + TW+ G + ++I++ + G +
Sbjct: 32 VVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMG---VS 88
Query: 101 EVGTFKERIQWVGDPRWKDGSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVFEKV 160
+ ++ER++++ P + DG+I + L+ D G + C+ P + SQ+ L V K
Sbjct: 89 VLAPYRERVEFL-RPSFTDGTIRLSRLELEDEGVYICEFATFP-TGNRESQLNLTVMAK- 145
Query: 161 PTRY 164
PT +
Sbjct: 146 PTNW 149
Score = 41.2 bits (95), Expect = 0.001
Identities = 40/140 (28%), Positives = 62/140 (44%), Gaps = 14/140 (10%)
Query: 127 LDYSDNGTFTCDVKNPPDIVGKTSQVTLYVFEKVPT------RYGVVLGAVIGGVLGVVL 180
++YS GT+ C+ NP +V + F P+ R G V A+IGGV G +L
Sbjct: 306 INYSLAGTYICEATNPIGTRSGQVEVNITEFPYTPSPPEHGRRAGPVPTAIIGGVAGSIL 365
Query: 181 LLLLLFYVVRYCWLRRQAALQRRLSAMEKGKLHKPGKDASKRG--RQTPVLYAMLDHSRS 238
L+L++ + RR+ + S K H G SK G + P + L +
Sbjct: 366 LVLIVVGGIVVALRRRRHTFKGDYST----KKHVYGNGYSKAGIPQHHPPMAQNLQYPDD 421
Query: 239 TKAVSEKKAKGLGESRKDKK 258
+ EKKA LG S +++
Sbjct: 422 SD--DEKKAGPLGGSSYEEE 439
>gi|215272334 sodium channel, voltage-gated, type IV, beta isoform 3
[Homo sapiens]
Length = 118
Score = 49.3 bits (116), Expect = 3e-06
Identities = 25/70 (35%), Positives = 45/70 (64%), Gaps = 6/70 (8%)
Query: 121 SIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYV-----FEKVPTRYGVVLGAVIGGV 175
SIV+ +L++SD G +TC VKNP + T+++ E+V +++ AV+GGV
Sbjct: 5 SIVLRDLEFSDTGKYTCHVKNPKE-NNLQHHATIFLQVVDRLEEVDNTVTLIILAVVGGV 63
Query: 176 LGVVLLLLLL 185
+G+++L+LL+
Sbjct: 64 IGLLILILLI 73
>gi|148664224 adhesion molecule, interacts with CXADR antigen 1
isoform 2 [Homo sapiens]
Length = 384
Score = 49.3 bits (116), Expect = 3e-06
Identities = 43/160 (26%), Positives = 70/160 (43%), Gaps = 18/160 (11%)
Query: 46 REVHGAVGSRVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAK---GQPYIDEV 102
+E+ VG + + C F S+E V W + ++ I +Y K Y
Sbjct: 131 KELMVHVGGLIQMGCVFQSTE-VKHVTKVEWIFSGRRAKEEIVFRYYHKLRMSVEYSQSW 189
Query: 103 GTFKERIQWVGDPRWKDGSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVFEKVPT 162
G F+ R+ VGD DGSI++ + SD G +TC + + KT + L+V + P
Sbjct: 190 GHFQNRVNLVGDIFRNDGSIMLQGVRESDGGNYTCSIHLGNLVFKKT--IVLHVSPEEPR 247
Query: 163 RY-------GVVLGA-----VIGGVLGVVLLLLLLFYVVR 190
+VLG ++G V +LLL +L +V+
Sbjct: 248 TLVTPAALRPLVLGGNQLVIIVGIVCATILLLPVLILIVK 287
Score = 47.4 bits (111), Expect = 1e-05
Identities = 36/146 (24%), Positives = 67/146 (45%), Gaps = 11/146 (7%)
Query: 52 VGSRVTLHCSFWSSEWVSDDISFT--WRYQP-EGGRDAISIFHYAKGQPYIDEVGTFKER 108
VG + C F S+E D F W P E +D +++Y+ +G F+ R
Sbjct: 24 VGDSALMGCVFQSTE---DKCIFKIDWTLSPGEHAKDEYVLYYYSNLSV---PIGRFQNR 77
Query: 109 IQWVGDPRWKDGSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVFEKVPTRYGVVL 168
+ +GD DGS+++ ++ +D GT+ C+++ + V L+V + P V +
Sbjct: 78 VHLMGDILCNDGSLLLQDVQEADQGTYICEIRLKGESQVFKKAVVLHVLPEEPKELMVHV 137
Query: 169 GAVIGGVLGVVLLLLLLFYVVRYCWL 194
G +I +G V + +V + W+
Sbjct: 138 GGLI--QMGCVFQSTEVKHVTKVEWI 161
>gi|148664207 adhesion molecule, interacts with CXADR antigen 1
isoform 1 [Homo sapiens]
Length = 394
Score = 49.3 bits (116), Expect = 3e-06
Identities = 43/160 (26%), Positives = 70/160 (43%), Gaps = 18/160 (11%)
Query: 46 REVHGAVGSRVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAK---GQPYIDEV 102
+E+ VG + + C F S+E V W + ++ I +Y K Y
Sbjct: 141 KELMVHVGGLIQMGCVFQSTE-VKHVTKVEWIFSGRRAKEEIVFRYYHKLRMSVEYSQSW 199
Query: 103 GTFKERIQWVGDPRWKDGSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVFEKVPT 162
G F+ R+ VGD DGSI++ + SD G +TC + + KT + L+V + P
Sbjct: 200 GHFQNRVNLVGDIFRNDGSIMLQGVRESDGGNYTCSIHLGNLVFKKT--IVLHVSPEEPR 257
Query: 163 RY-------GVVLGA-----VIGGVLGVVLLLLLLFYVVR 190
+VLG ++G V +LLL +L +V+
Sbjct: 258 TLVTPAALRPLVLGGNQLVIIVGIVCATILLLPVLILIVK 297
Score = 48.5 bits (114), Expect = 6e-06
Identities = 46/175 (26%), Positives = 80/175 (45%), Gaps = 15/175 (8%)
Query: 23 ILAVLLFSSLVLSPAQAIVVYTDREVHGAVGSRVTLHCSFWSSEWVSDDISFT--WRYQP 80
+L VLL SL L+ V + VH VG + C F S+E D F W P
Sbjct: 9 LLPVLLDYSLGLNDLN--VSPPELTVH--VGDSALMGCVFQSTE---DKCIFKIDWTLSP 61
Query: 81 -EGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPRWKDGSIVIHNLDYSDNGTFTCDV 139
E +D +++Y+ +G F+ R+ +GD DGS+++ ++ +D GT+ C++
Sbjct: 62 GEHAKDEYVLYYYSNLSV---PIGRFQNRVHLMGDILCNDGSLLLQDVQEADQGTYICEI 118
Query: 140 KNPPDIVGKTSQVTLYVFEKVPTRYGVVLGAVIGGVLGVVLLLLLLFYVVRYCWL 194
+ + V L+V + P V +G +I +G V + +V + W+
Sbjct: 119 RLKGESQVFKKAVVLHVLPEEPKELMVHVGGLI--QMGCVFQSTEVKHVTKVEWI 171
>gi|4506805 sodium channel, voltage-gated, type I, beta isoform a
[Homo sapiens]
Length = 218
Score = 47.0 bits (110), Expect = 2e-05
Identities = 43/188 (22%), Positives = 80/188 (42%), Gaps = 11/188 (5%)
Query: 24 LAVLLFSSLVLSPAQAIVVYTDREVHGAVGSRVTLHCSFWSSEWVSDDISFT-WRYQPEG 82
L L+ + ++S A V D E G + C ++ +FT W ++ +G
Sbjct: 4 LLALVVGAALVSSACGGCVEVDSETEAVYGMTFKILCISCKRRSETNAETFTEWTFRQKG 63
Query: 83 GRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPRWK---DGSIVIHNLDYSDNGTFTCDV 139
+ + I Y ++E F+ R+ W G K D SI I N+ Y+ +G + C V
Sbjct: 64 TEEFVKILRYENEVLQLEEDERFEGRVVWNGSRGTKDLQDLSIFITNVTYNHSGDYECHV 123
Query: 140 ------KNPPDIVGKTSQVTLYVFEKVPTRYGVVLGAVIGGVLGVVLLLLLLFYVVRYCW 193
+N ++ + V +K ++ ++ VL VVL + L+ ++ YC+
Sbjct: 124 YRLLFFENYEHNTSVVKKIHIEVVDKANRDMASIVSEIMMYVLIVVLTIWLVAEMI-YCY 182
Query: 194 LRRQAALQ 201
+ AA +
Sbjct: 183 KKIAAATE 190
>gi|62865876 immunoglobulin superfamily, member 11 isoform b [Homo
sapiens]
Length = 431
Score = 46.2 bits (108), Expect = 3e-05
Identities = 43/138 (31%), Positives = 60/138 (43%), Gaps = 4/138 (2%)
Query: 17 SSSPSPILAVLLFSSLVLSPAQAIVVYTDREVHGAVGSRVTLHCSFWSSEWVSDDISFTW 76
+S SP LA LL SL A V + + A G L C+F +S + + ++ W
Sbjct: 2 TSQRSP-LAPLLLLSLHGVAASLEVSESPGSIQVARGQPAVLPCTFTTSAALIN-LNVIW 59
Query: 77 RYQP-EGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPRWKDGSIVIHNLDYSDNGTF 135
P + Y GQ + D F R+ + G + SI I+N SD GT+
Sbjct: 60 MVTPLSNANQPEQVILYQGGQMF-DGAPRFHGRVGFTGTMPATNVSIFINNTQLSDTGTY 118
Query: 136 TCDVKNPPDIVGKTSQVT 153
C V N PDI G+ VT
Sbjct: 119 QCLVNNLPDIGGRNIGVT 136
>gi|148664211 immunoglobulin superfamily, member 4D isoform 2 [Homo
sapiens]
Length = 414
Score = 44.7 bits (104), Expect = 8e-05
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 7/73 (9%)
Query: 121 SIVIHNLDYSDNGTFTCDVKNPPDIVGKT-SQVTLYVFEKVPTRYGVVLG---AVIGGVL 176
++ I+NL+ +DNGT+ C+ N IVGK S LYV++ G + AVIGGV+
Sbjct: 297 NLFINNLNKTDNGTYRCEASN---IVGKAHSDYMLYVYDSRAGEEGSIRAVDHAVIGGVV 353
Query: 177 GVVLLLLLLFYVV 189
VV+ +L ++
Sbjct: 354 AVVVFAMLCLLII 366
>gi|4503173 coxsackie virus and adenovirus receptor precursor [Homo
sapiens]
Length = 365
Score = 42.7 bits (99), Expect = 3e-04
Identities = 34/127 (26%), Positives = 52/127 (40%), Gaps = 3/127 (2%)
Query: 33 VLSPAQAIVVYTDRE-VHGAVGSRVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAIS-IF 90
V+ A+++ + T E + A G L C F S + W P + I
Sbjct: 13 VVDFARSLSITTPEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVII 72
Query: 91 HYAKGQPYIDEVGTFKERIQWVG-DPRWKDGSIVIHNLDYSDNGTFTCDVKNPPDIVGKT 149
Y+ + Y D K R+ + D + D SI + NL SD GT+ C VK P + K
Sbjct: 73 LYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKK 132
Query: 150 SQVTLYV 156
+ + V
Sbjct: 133 IHLVVLV 139
>gi|62865874 immunoglobulin superfamily, member 11 isoform a [Homo
sapiens]
Length = 430
Score = 42.4 bits (98), Expect = 4e-04
Identities = 32/104 (30%), Positives = 46/104 (44%), Gaps = 3/104 (2%)
Query: 51 AVGSRVTLHCSFWSSEWVSDDISFTWRYQP-EGGRDAISIFHYAKGQPYIDEVGTFKERI 109
A G L C+F +S + + ++ W P + Y GQ + D F R+
Sbjct: 34 ARGQPAVLPCTFTTSAALIN-LNVIWMVTPLSNANQPEQVILYQGGQMF-DGAPRFHGRV 91
Query: 110 QWVGDPRWKDGSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVT 153
+ G + SI I+N SD GT+ C V N PDI G+ VT
Sbjct: 92 GFTGTMPATNVSIFINNTQLSDTGTYQCLVNNLPDIGGRNIGVT 135
>gi|21361429 V-set and immunoglobulin domain containing 2 [Homo
sapiens]
Length = 327
Score = 42.0 bits (97), Expect = 5e-04
Identities = 32/128 (25%), Positives = 54/128 (42%), Gaps = 7/128 (5%)
Query: 20 PSPILAVLLFSSLVLSPAQAIVVYTDREVHGAVGSRVTLHCSFWSSEWVSDDISFTWRYQ 79
P P L L L LS V + +G L C++ +S V D + W +
Sbjct: 5 PGPFLCGALLGFLCLSGLAVEVKVPTEPLSTPLGKTAELTCTYSTS--VGDSFALEWSFV 62
Query: 80 PEGG--RDAISIFHYAKGQPYIDEVGTFKERIQWVGDPRWKD-GSIVIHNLDYSDNGTFT 136
G ++ I ++ G Y G+ +R+ + +P ++ + ++ SD GT+
Sbjct: 63 QPGKPISESHPILYFTNGHLY--PTGSKSKRVSLLQNPPTVGVATLKLTDVHPSDTGTYL 120
Query: 137 CDVKNPPD 144
C V NPPD
Sbjct: 121 CQVNNPPD 128
Score = 40.4 bits (93), Expect = 0.002
Identities = 28/73 (38%), Positives = 45/73 (61%), Gaps = 7/73 (9%)
Query: 120 GSIVIHNLDYSDNGTFTCDVKNPPDIVGKTS-QVTLYVFEKVPTRYGVVLGAVIGGVLGV 178
G +++ NL + +GT+ C N +G S ++TL V E P++ G V GA+IG +LGV
Sbjct: 200 GQLILTNLSLTSSGTYRCVATNQ---MGSASCELTLSVTE--PSQ-GRVAGALIGVLLGV 253
Query: 179 VLLLLLLFYVVRY 191
+LL + F +VR+
Sbjct: 254 LLLSVAAFCLVRF 266
>gi|5360210 poliovirus receptor related 2 isoform alpha precursor
[Homo sapiens]
Length = 479
Score = 41.6 bits (96), Expect = 7e-04
Identities = 40/153 (26%), Positives = 59/153 (38%), Gaps = 17/153 (11%)
Query: 1 MLRAPAPAPAMAPGAPSSSPSPILAVLLFSSLVLSPAQAIVVYTDREVHGAVGSRVTLHC 60
M RA A P+ +P P+P+L LL L+ + AQ + V EV G +G V L C
Sbjct: 1 MARAAALLPSRSP------PTPLLWPLLLLLLLETGAQDVRVQVLPEVRGQLGGTVELPC 54
Query: 61 SFWSSEWVSDDISFTW-RYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVG------ 113
TW R ++ FH G P ER+ +V
Sbjct: 55 HLLPPVPGLYISLVTWQRPDAPANHQNVAAFHPKMG-PSFPSPKPGSERLSFVSAKQSTG 113
Query: 114 ---DPRWKDGSIVIHNLDYSDNGTFTCDVKNPP 143
+ +D ++ +H L D G +TC+ P
Sbjct: 114 QDTEAELQDATLALHGLTVEDEGNYTCEFATFP 146
Score = 32.0 bits (71), Expect = 0.55
Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 5/64 (7%)
Query: 122 IVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVFE---KVPTRYGVVLGAVIGGVLGV 178
+VIH +D N TF C V N +G+ QV ++V E P G ++ +GG L V
Sbjct: 314 LVIHAVDSLFNTTFVCTVTNAVG-MGRAEQV-IFVRETPRASPRDVGPLVWGAVGGTLLV 371
Query: 179 VLLL 182
+LLL
Sbjct: 372 LLLL 375
>gi|112789532 poliovirus receptor related 2 isoform delta precursor
[Homo sapiens]
Length = 538
Score = 41.6 bits (96), Expect = 7e-04
Identities = 40/153 (26%), Positives = 59/153 (38%), Gaps = 17/153 (11%)
Query: 1 MLRAPAPAPAMAPGAPSSSPSPILAVLLFSSLVLSPAQAIVVYTDREVHGAVGSRVTLHC 60
M RA A P+ +P P+P+L LL L+ + AQ + V EV G +G V L C
Sbjct: 1 MARAAALLPSRSP------PTPLLWPLLLLLLLETGAQDVRVQVLPEVRGQLGGTVELPC 54
Query: 61 SFWSSEWVSDDISFTW-RYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVG------ 113
TW R ++ FH G P ER+ +V
Sbjct: 55 HLLPPVPGLYISLVTWQRPDAPANHQNVAAFHPKMG-PSFPSPKPGSERLSFVSAKQSTG 113
Query: 114 ---DPRWKDGSIVIHNLDYSDNGTFTCDVKNPP 143
+ +D ++ +H L D G +TC+ P
Sbjct: 114 QDTEAELQDATLALHGLTVEDEGNYTCEFATFP 146
Score = 35.4 bits (80), Expect = 0.050
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
Query: 122 IVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVFEKVPTRYGVVLGAVIGGVLGVVLL 181
+VIH +D N TF C V N +G+ QV ++V E T G +IGG++ ++
Sbjct: 314 LVIHAVDSLFNTTFVCTVTNAVG-MGRAEQV-IFVRETPNTAGAGATGGIIGGIIAAIIA 371
Query: 182 LLLLFYVVRYCWLRRQAALQRRLSAMEKGKLHKP 215
+ + C R+Q Q A E L P
Sbjct: 372 TAVAATGILIC--RQQRKEQTLQGAEEDEDLEGP 403
>gi|15826840 PTK7 protein tyrosine kinase 7 isoform a precursor
[Homo sapiens]
Length = 1070
Score = 41.6 bits (96), Expect = 7e-04
Identities = 40/151 (26%), Positives = 69/151 (45%), Gaps = 32/151 (21%)
Query: 72 ISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPR-------------WK 118
+ T++ +PE R + H A Q + G K IQW G R ++
Sbjct: 590 VFITFKVEPE--RTTVYQGHTALLQ--CEAQGDPKPLIQWKGKDRILDPTKLGPRMHIFQ 645
Query: 119 DGSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVFEK----------VPTRYGVV- 167
+GS+VIH++ D+G +TC N +I K ++ LYV +K P Y ++
Sbjct: 646 NGSLVIHDVAPEDSGRYTCIAGNSCNI--KHTEAPLYVVDKPVPEESEGPGSPPPYKMIQ 703
Query: 168 -LGAVIGGVLGVVLLLL-LLFYVVRYCWLRR 196
+G +G + ++ +L L+FY + C +R
Sbjct: 704 TIGLSVGAAVAYIIAVLGLMFYCKKRCKAKR 734
>gi|22902128 PTK7 protein tyrosine kinase 7 isoform c precursor
[Homo sapiens]
Length = 940
Score = 41.6 bits (96), Expect = 7e-04
Identities = 40/151 (26%), Positives = 69/151 (45%), Gaps = 32/151 (21%)
Query: 72 ISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPR-------------WK 118
+ T++ +PE R + H A Q + G K IQW G R ++
Sbjct: 460 VFITFKVEPE--RTTVYQGHTALLQ--CEAQGDPKPLIQWKGKDRILDPTKLGPRMHIFQ 515
Query: 119 DGSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVFEK----------VPTRYGVV- 167
+GS+VIH++ D+G +TC N +I K ++ LYV +K P Y ++
Sbjct: 516 NGSLVIHDVAPEDSGRYTCIAGNSCNI--KHTEAPLYVVDKPVPEESEGPGSPPPYKMIQ 573
Query: 168 -LGAVIGGVLGVVLLLL-LLFYVVRYCWLRR 196
+G +G + ++ +L L+FY + C +R
Sbjct: 574 TIGLSVGAAVAYIIAVLGLMFYCKKRCKAKR 604
>gi|22902126 PTK7 protein tyrosine kinase 7 isoform b precursor
[Homo sapiens]
Length = 1030
Score = 41.6 bits (96), Expect = 7e-04
Identities = 40/151 (26%), Positives = 69/151 (45%), Gaps = 32/151 (21%)
Query: 72 ISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPR-------------WK 118
+ T++ +PE R + H A Q + G K IQW G R ++
Sbjct: 550 VFITFKVEPE--RTTVYQGHTALLQ--CEAQGDPKPLIQWKGKDRILDPTKLGPRMHIFQ 605
Query: 119 DGSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVFEK----------VPTRYGVV- 167
+GS+VIH++ D+G +TC N +I K ++ LYV +K P Y ++
Sbjct: 606 NGSLVIHDVAPEDSGRYTCIAGNSCNI--KHTEAPLYVVDKPVPEESEGPGSPPPYKMIQ 663
Query: 168 -LGAVIGGVLGVVLLLL-LLFYVVRYCWLRR 196
+G +G + ++ +L L+FY + C +R
Sbjct: 664 TIGLSVGAAVAYIIAVLGLMFYCKKRCKAKR 694
>gi|5921461 butyrophilin, subfamily 2, member A1 isoform 1 precursor
[Homo sapiens]
Length = 527
Score = 41.2 bits (95), Expect = 0.001
Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 14/125 (11%)
Query: 18 SSPSPILAVLLFSSLVLSPAQAIVVYTDREVHGAVGSRVTLHCSFWSSEWVSDDISFTW- 76
S P+ +L +LL S L AQ IVV + VG TL C S E ++D+ W
Sbjct: 10 SRPASLL-LLLLSLCALVSAQFIVVGPTDPILATVGENTTLRCHL-SPEKNAEDMEVRWF 67
Query: 77 --RYQPEGGRDAISIFHYAKGQPYIDE-VGTFKERIQWVG-DPRWKDGSIVIHNLDYSDN 132
++ P ++F Y G+ +E + ++ R +V D ++VIHN+ +N
Sbjct: 68 RSQFSP-------AVFVYKGGRERTEEQMEEYRGRTTFVSKDISRGSVALVIHNITAQEN 120
Query: 133 GTFTC 137
GT+ C
Sbjct: 121 GTYRC 125
>gi|17975772 butyrophilin, subfamily 2, member A1 isoform 2
precursor [Homo sapiens]
Length = 334
Score = 41.2 bits (95), Expect = 0.001
Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 14/125 (11%)
Query: 18 SSPSPILAVLLFSSLVLSPAQAIVVYTDREVHGAVGSRVTLHCSFWSSEWVSDDISFTW- 76
S P+ +L +LL S L AQ IVV + VG TL C S E ++D+ W
Sbjct: 10 SRPASLL-LLLLSLCALVSAQFIVVGPTDPILATVGENTTLRCHL-SPEKNAEDMEVRWF 67
Query: 77 --RYQPEGGRDAISIFHYAKGQPYIDE-VGTFKERIQWVG-DPRWKDGSIVIHNLDYSDN 132
++ P ++F Y G+ +E + ++ R +V D ++VIHN+ +N
Sbjct: 68 RSQFSP-------AVFVYKGGRERTEEQMEEYRGRTTFVSKDISRGSVALVIHNITAQEN 120
Query: 133 GTFTC 137
GT+ C
Sbjct: 121 GTYRC 125
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.136 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,822,715
Number of Sequences: 37866
Number of extensions: 523765
Number of successful extensions: 3992
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 125
Number of HSP's that attempted gapping in prelim test: 3619
Number of HSP's gapped (non-prelim): 466
length of query: 258
length of database: 18,247,518
effective HSP length: 100
effective length of query: 158
effective length of database: 14,460,918
effective search space: 2284825044
effective search space used: 2284825044
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.