Search of human proteins with 13027606

Search of human proteins with 13027606

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|13027606 mitochondrial ribosomal protein L34 [Homo sapiens]
         (92 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|13027606 mitochondrial ribosomal protein L34 [Homo sapiens]        192   5e-50
gi|209693464 ubiquitin related modifier 1 homolog isoform b [Hom...    29   0.72 
gi|169178065 PREDICTED: hypothetical protein [Homo sapiens]            28   1.2  
gi|169179313 PREDICTED: hypothetical protein [Homo sapiens]            28   1.2  
gi|169181069 PREDICTED: hypothetical protein [Homo sapiens]            28   1.2  
gi|4503549 neutrophil elastase preproprotein [Homo sapiens]            28   1.6  
gi|14149696 SEC31 homolog B [Homo sapiens]                             28   1.6  
gi|239749196 PREDICTED: hypothetical protein XP_002346951 [Homo ...    27   2.7  
gi|239743276 PREDICTED: hypothetical protein XP_002342815 [Homo ...    27   2.7  
gi|239508959 PREDICTED: hypothetical protein [Homo sapiens]            27   2.7  
gi|21704281 junctophilin 2 isoform 1 [Homo sapiens]                    27   3.5  
gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo sap...    27   4.6  
gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo sap...    27   4.6  
gi|239752659 PREDICTED: hypothetical protein [Homo sapiens]            26   6.1  
gi|239747203 PREDICTED: hypothetical protein LOC643965 [Homo sap...    26   6.1  
gi|239741003 PREDICTED: hypothetical protein LOC643965 [Homo sap...    26   6.1  
gi|154813204 inhibin beta B subunit preproprotein [Homo sapiens]       26   6.1  
gi|20149528 proline-serine-threonine phosphatase interacting pro...    26   6.1  
gi|122937259 solute carrier family 45, member 4 [Homo sapiens]         26   7.9  

>gi|13027606 mitochondrial ribosomal protein L34 [Homo sapiens]
          Length = 92

 Score =  192 bits (488), Expect = 5e-50
 Identities = 92/92 (100%), Positives = 92/92 (100%)

Query: 1  MAVLAGSLLGPTSRSAALLGGRWLQPRAWLGFPDAWGLPTPQQARGKARGNEYQPSNIKR 60
          MAVLAGSLLGPTSRSAALLGGRWLQPRAWLGFPDAWGLPTPQQARGKARGNEYQPSNIKR
Sbjct: 1  MAVLAGSLLGPTSRSAALLGGRWLQPRAWLGFPDAWGLPTPQQARGKARGNEYQPSNIKR 60

Query: 61 KNKHGWVRRLSTPAGVQVILRRMLKGRKSLSH 92
          KNKHGWVRRLSTPAGVQVILRRMLKGRKSLSH
Sbjct: 61 KNKHGWVRRLSTPAGVQVILRRMLKGRKSLSH 92


>gi|209693464 ubiquitin related modifier 1 homolog isoform b [Homo
           sapiens]
          Length = 146

 Score = 29.3 bits (64), Expect = 0.72
 Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 3/50 (6%)

Query: 6   GSLLGPTSRSAALLGGRWLQPRA---WLGFPDAWGLPTPQQARGKARGNE 52
           G +  P    AA +G RW  P+A   WLG P     PT +       G E
Sbjct: 84  GDIPPPAPALAASVGKRWASPQAHIEWLGNPPPHSSPTLRLLESPTPGEE 133


>gi|169178065 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 150

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 16/50 (32%), Positives = 23/50 (46%)

Query: 3   VLAGSLLGPTSRSAALLGGRWLQPRAWLGFPDAWGLPTPQQARGKARGNE 52
           +L  ++LG T +   L  G+  Q R W+     W    PQQ R K  G +
Sbjct: 75  LLGHNILGTTKKPFHLSFGKEEQLRLWVAHVTIWKPAGPQQTRCKLLGGK 124


>gi|169179313 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 150

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 16/50 (32%), Positives = 23/50 (46%)

Query: 3   VLAGSLLGPTSRSAALLGGRWLQPRAWLGFPDAWGLPTPQQARGKARGNE 52
           +L  ++LG T +   L  G+  Q R W+     W    PQQ R K  G +
Sbjct: 75  LLGHNILGTTKKPFHLSFGKEEQLRLWVAHVTIWKPAGPQQTRCKLLGGK 124


>gi|169181069 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 150

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 16/50 (32%), Positives = 23/50 (46%)

Query: 3   VLAGSLLGPTSRSAALLGGRWLQPRAWLGFPDAWGLPTPQQARGKARGNE 52
           +L  ++LG T +   L  G+  Q R W+     W    PQQ R K  G +
Sbjct: 75  LLGHNILGTTKKPFHLSFGKEEQLRLWVAHVTIWKPAGPQQTRCKLLGGK 124


>gi|4503549 neutrophil elastase preproprotein [Homo sapiens]
          Length = 267

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 12/27 (44%), Positives = 18/27 (66%)

Query: 3  VLAGSLLGPTSRSAALLGGRWLQPRAW 29
          VL   LLG T+ ++ ++GGR  +P AW
Sbjct: 15 VLPALLLGGTALASEIVGGRRARPHAW 41


>gi|14149696 SEC31 homolog B [Homo sapiens]
          Length = 1179

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 13/29 (44%), Positives = 16/29 (55%)

Query: 11  PTSRSAALLGGRWLQPRAWLGFPDAWGLP 39
           P S    LLGG+ +Q    +GFP  W LP
Sbjct: 883 PASSQPQLLGGQRVQVPNPVGFPGTWPLP 911


>gi|239749196 PREDICTED: hypothetical protein XP_002346951 [Homo
           sapiens]
          Length = 528

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 14/33 (42%), Positives = 17/33 (51%)

Query: 26  PRAWLGFPDAWGLPTPQQARGKARGNEYQPSNI 58
           PR+    PDA G PTP +ARG        P+ I
Sbjct: 281 PRSPASGPDARGAPTPGRARGGGASWSATPTTI 313


>gi|239743276 PREDICTED: hypothetical protein XP_002342815 [Homo
           sapiens]
          Length = 528

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 14/33 (42%), Positives = 17/33 (51%)

Query: 26  PRAWLGFPDAWGLPTPQQARGKARGNEYQPSNI 58
           PR+    PDA G PTP +ARG        P+ I
Sbjct: 281 PRSPASGPDARGAPTPGRARGGGASWSATPTTI 313


>gi|239508959 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 528

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 14/33 (42%), Positives = 17/33 (51%)

Query: 26  PRAWLGFPDAWGLPTPQQARGKARGNEYQPSNI 58
           PR+    PDA G PTP +ARG        P+ I
Sbjct: 281 PRSPASGPDARGAPTPGRARGGGASWSATPTTI 313


>gi|21704281 junctophilin 2 isoform 1 [Homo sapiens]
          Length = 696

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 26/90 (28%), Positives = 34/90 (37%), Gaps = 22/90 (24%)

Query: 21  GRWLQPRAWL-GFPDAWGLPTPQQARGK------------------ARGNEYQPSNIKRK 61
           GRWL    W  GF   +G+     +  K                  A G  YQ       
Sbjct: 78  GRWLYKGEWTHGFKGRYGIRQSSSSGAKYEGTWNNGLQDGYGTETYADGGTYQ-GQFTNG 136

Query: 62  NKHGWVRRLSTPAGVQVILRRMLKGRKSLS 91
            +HG+  R S P G+ V++R  L  R SLS
Sbjct: 137 MRHGYGVRQSVPYGMAVVVRSPL--RTSLS 164


>gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo sapiens]
          Length = 2462

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 3/31 (9%)

Query: 24   LQPRAWLGFPDAWGLPTPQQA---RGKARGN 51
            L PR   G P++ G+PT Q+A   RG A G+
Sbjct: 1163 LSPRGQAGPPESLGVPTAQEASVLRGTALGS 1193


>gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo sapiens]
          Length = 2524

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 3/31 (9%)

Query: 24   LQPRAWLGFPDAWGLPTPQQA---RGKARGN 51
            L PR   G P++ G+PT Q+A   RG A G+
Sbjct: 1179 LSPRGQAGPPESLGVPTAQEASVLRGTALGS 1209


>gi|239752659 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 186

 Score = 26.2 bits (56), Expect = 6.1
 Identities = 12/24 (50%), Positives = 14/24 (58%)

Query: 20 GGRWLQPRAWLGFPDAWGLPTPQQ 43
          GG  +Q RA +  PDAW  P  QQ
Sbjct: 30 GGSPVQRRAAMPVPDAWVCPVAQQ 53


>gi|239747203 PREDICTED: hypothetical protein LOC643965 [Homo
          sapiens]
          Length = 451

 Score = 26.2 bits (56), Expect = 6.1
 Identities = 12/24 (50%), Positives = 14/24 (58%)

Query: 20 GGRWLQPRAWLGFPDAWGLPTPQQ 43
          GG  +Q RA +  PDAW  P  QQ
Sbjct: 67 GGSPVQRRAAMPVPDAWVCPVAQQ 90


>gi|239741003 PREDICTED: hypothetical protein LOC643965 [Homo
          sapiens]
          Length = 487

 Score = 26.2 bits (56), Expect = 6.1
 Identities = 12/24 (50%), Positives = 14/24 (58%)

Query: 20 GGRWLQPRAWLGFPDAWGLPTPQQ 43
          GG  +Q RA +  PDAW  P  QQ
Sbjct: 67 GGSPVQRRAAMPVPDAWVCPVAQQ 90


>gi|154813204 inhibin beta B subunit preproprotein [Homo sapiens]
          Length = 407

 Score = 26.2 bits (56), Expect = 6.1
 Identities = 10/13 (76%), Positives = 11/13 (84%), Gaps = 1/13 (7%)

Query: 29 WLGFPDAWGLPTP 41
          WLG P+AWG PTP
Sbjct: 21 WLG-PEAWGSPTP 32


>gi|20149528 proline-serine-threonine phosphatase interacting
          protein 1 [Homo sapiens]
          Length = 416

 Score = 26.2 bits (56), Expect = 6.1
 Identities = 10/23 (43%), Positives = 15/23 (65%)

Query: 66 WVRRLSTPAGVQVILRRMLKGRK 88
          W R  +   G +V+L+R+L GRK
Sbjct: 12 WCRDFTAHTGYEVLLQRLLDGRK 34


>gi|122937259 solute carrier family 45, member 4 [Homo sapiens]
          Length = 798

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 37  GLPTPQQARGKARGNEYQPSNIKRKNKHG 65
           GL +P    G+A GN  +P+ +K   K G
Sbjct: 678 GLSSPLAGEGRAGGNSEKPTVLKLTRKEG 706


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.135    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,093,704
Number of Sequences: 37866
Number of extensions: 188926
Number of successful extensions: 441
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 425
Number of HSP's gapped (non-prelim): 21
length of query: 92
length of database: 18,247,518
effective HSP length: 63
effective length of query: 29
effective length of database: 15,861,960
effective search space: 459996840
effective search space used: 459996840
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.