Guide to the Human Genome
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Name: LOC646864 Sequence: fasta or formatted (560aa) NCBI GI: 169214277
Description:

PREDICTED: similar to hCG36734

Not currently referenced in the text

Other entries for this name:
alt mRNA {560aa} PREDICTED: similar to hCG36734
alt mRNA {560aa} PREDICTED: similar to hCG36734
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.6         20           1
 C cysteine            6.6         37           2
 D aspartate           2.3         13           1
 E glutamate           8.0         45           2
 F phenylalanine       5.2         29           2
 G glycine             7.0         39           2
 H histidine           5.9         33           1
 I isoleucine          3.9         22           2
 K lysine             14.5         81           1
 L leucine             5.5         31           1
 M methionine          1.2          7           1
 N asparagine          5.9         33           2
 P proline             3.6         20           2
 Q glutamine           3.0         17           2
 R arginine            3.4         19           1
 S serine              6.6         37           3
 T threonine           5.9         33           3
 V valine              3.4         19           2
 W tryptophan          0.5          3           1
 Y tyrosine            3.9         22           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG36734 
LOC646864             1.000   PREDICTED: similar to hCG36734 
LOC646864             1.000   PREDICTED: similar to hCG36734 
ZNF92                 0.680   zinc finger protein 92 isoform 2 
ZNF85                 0.680   zinc finger protein 85 
ZNF98                 0.667   zinc finger protein 98 
LOC730110             0.666   PREDICTED: Zinc finger protein ENSP00000351689 [Hom...
LOC730110             0.666   PREDICTED: Zinc finger protein ENSP00000351689 [Hom...
LOC730110             0.666   PREDICTED: Zinc finger protein ENSP00000351689 [Hom...
ZNF708                0.658   zinc finger protein 708 
ZNF273                0.657   zinc finger protein 273 
ZNF430                0.656   zinc finger protein 430 
ZNF680                0.653   zinc finger protein 680 isoform 1 
ZNF431                0.650   zinc finger protein 431 
ZNF257                0.644   zinc finger protein 257 
ZNF737                0.642   zinc finger protein 737 
ZNF737                0.642   PREDICTED: zinc finger protein 737 
ZNF737                0.642   PREDICTED: zinc finger protein 737 
ZNF737                0.642   PREDICTED: zinc finger protein 737 
ZNF66                 0.638   PREDICTED: zinc finger protein 66 
ZNF66                 0.638   PREDICTED: zinc finger protein 66 
ZNF66                 0.638   PREDICTED: zinc finger protein 66 
ZNF100                0.635   zinc finger protein 100 
ZNF493                0.635   zinc finger protein 493 isoform 3 
ZNF254                0.633   zinc finger protein 254 
ZNF429                0.633   zinc finger protein 429 
ZNF93                 0.632   zinc finger protein 93 
ZNF675                0.631   zinc finger protein 675 
ZNF492                0.629   zinc finger protein 492 
ZNF726                0.628   PREDICTED: zinc finger protein 726 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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