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Search of human proteins with 4504947
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4504947 lactalbumin, alpha- precursor [Homo sapiens]
(142 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4504947 lactalbumin, alpha- precursor [Homo sapiens] 298 1e-81
gi|4557894 lysozyme precursor [Homo sapiens] 96 8e-21
gi|73088987 lysozyme-like 2 [Homo sapiens] 92 1e-19
gi|73390143 lysozyme-like 1 [Homo sapiens] 92 1e-19
gi|27777653 sperm acrosome associated 3 [Homo sapiens] 89 9e-19
gi|118498373 sperm acrosome associated 5 [Homo sapiens] 82 2e-16
gi|120952755 sperm acrosome associated 5B [Homo sapiens] 82 2e-16
gi|9966905 lysozyme-like 6 [Homo sapiens] 76 1e-14
gi|21389465 lysozyme-like 4 [Homo sapiens] 61 4e-10
gi|56711286 hypothetical protein LOC340533 [Homo sapiens] 31 0.39
gi|18921093 transient receptor potential cation channel, subfami... 28 3.3
gi|22212943 ubiquitin-conjugating enzyme UBC3B [Homo sapiens] 28 3.3
gi|112789550 poly (ADP-ribose) polymerase family, member 4 [Homo... 27 5.7
gi|13173471 transmembrane protease, serine 3 isoform 1 [Homo sap... 27 7.4
gi|169174331 PREDICTED: hypothetical protein [Homo sapiens] 26 9.7
gi|169172659 PREDICTED: hypothetical protein [Homo sapiens] 26 9.7
gi|169172837 PREDICTED: hypothetical protein [Homo sapiens] 26 9.7
>gi|4504947 lactalbumin, alpha- precursor [Homo sapiens]
Length = 142
Score = 298 bits (762), Expect = 1e-81
Identities = 142/142 (100%), Positives = 142/142 (100%)
Query: 1 MRFFVPLFLVGILFPAILAKQFTKCELSQLLKDIDGYGGIALPELICTMFHTSGYDTQAI 60
MRFFVPLFLVGILFPAILAKQFTKCELSQLLKDIDGYGGIALPELICTMFHTSGYDTQAI
Sbjct: 1 MRFFVPLFLVGILFPAILAKQFTKCELSQLLKDIDGYGGIALPELICTMFHTSGYDTQAI 60
Query: 61 VENNESTEYGLFQISNKLWCKSSQVPQSRNICDISCDKFLDDDITDDIMCAKKILDIKGI 120
VENNESTEYGLFQISNKLWCKSSQVPQSRNICDISCDKFLDDDITDDIMCAKKILDIKGI
Sbjct: 61 VENNESTEYGLFQISNKLWCKSSQVPQSRNICDISCDKFLDDDITDDIMCAKKILDIKGI 120
Query: 121 DYWLAHKALCTEKLEQWLCEKL 142
DYWLAHKALCTEKLEQWLCEKL
Sbjct: 121 DYWLAHKALCTEKLEQWLCEKL 142
>gi|4557894 lysozyme precursor [Homo sapiens]
Length = 148
Score = 96.3 bits (238), Expect = 8e-21
Identities = 52/138 (37%), Positives = 82/138 (59%), Gaps = 6/138 (4%)
Query: 1 MRFFVPLFLVGILFPAILAKQFTKCELSQLLKDI--DGYGGIALPELICTMFHTSGYDTQ 58
M+ + L LV +L + K F +CEL++ LK + DGY GI+L +C SGY+T+
Sbjct: 1 MKALIVLGLV-LLSVTVQGKVFERCELARTLKRLGMDGYRGISLANWMCLAKWESGYNTR 59
Query: 59 AIVEN--NESTEYGLFQISNKLWCKSSQVPQSRNICDISCDKFLDDDITDDIMCAKKIL- 115
A N + ST+YG+FQI+++ WC + P + N C +SC L D+I D + CAK+++
Sbjct: 60 ATNYNAGDRSTDYGIFQINSRYWCNDGKTPGAVNACHLSCSALLQDNIADAVACAKRVVR 119
Query: 116 DIKGIDYWLAHKALCTEK 133
D +GI W+A + C +
Sbjct: 120 DPQGIRAWVAWRNRCQNR 137
>gi|73088987 lysozyme-like 2 [Homo sapiens]
Length = 194
Score = 92.0 bits (227), Expect = 1e-19
Identities = 48/136 (35%), Positives = 83/136 (61%), Gaps = 6/136 (4%)
Query: 7 LFLVGILFPAILAKQFTKCELSQLLK--DIDGYGGIALPELICTMFHTSGYDTQA-IVEN 63
L L+G L +K +T+C+L+++ +D Y G +L IC ++ SGY+T A V +
Sbjct: 53 LTLIGCLVTGAESKIYTRCKLAKIFSRAGLDNYWGFSLGNWICMAYYESGYNTTAQTVLD 112
Query: 64 NESTEYGLFQISNKLWCKSSQVPQSRNICDISCDKFLDDDITDDIMCAKKIL-DIKGIDY 122
+ S +YG+FQI++ WC+ ++ ++ N C ++C + DD+TD I+CAKKI+ + +G++Y
Sbjct: 113 DGSIDYGIFQINSFAWCRRGKLKEN-NHCHVACSALVTDDLTDAIICAKKIVKETQGMNY 171
Query: 123 WLAHKALCTEK-LEQW 137
W K C + L W
Sbjct: 172 WQGWKKHCEGRDLSDW 187
>gi|73390143 lysozyme-like 1 [Homo sapiens]
Length = 194
Score = 92.0 bits (227), Expect = 1e-19
Identities = 47/136 (34%), Positives = 84/136 (61%), Gaps = 6/136 (4%)
Query: 7 LFLVGILFPAILAKQFTKCELSQLLK--DIDGYGGIALPELICTMFHTSGYDTQA-IVEN 63
L L+G L +K +T+C+L+++ +D Y G +L IC ++ SGY+T A V +
Sbjct: 53 LTLIGCLVTGAESKIYTRCKLAKIFSRAGLDNYWGFSLGNWICMAYYESGYNTTAQTVLD 112
Query: 64 NESTEYGLFQISNKLWCKSSQVPQSRNICDISCDKFLDDDITDDIMCAKKIL-DIKGIDY 122
+ S +YG+FQI++ WC+ ++ ++ N C ++C + DD+TD I+CA+KI+ + +G++Y
Sbjct: 113 DGSIDYGIFQINSFAWCRRGKLKEN-NHCHVACSALITDDLTDAIICARKIVKETQGMNY 171
Query: 123 WLAHKALCTEK-LEQW 137
W K C + L +W
Sbjct: 172 WQGWKKHCEGRDLSEW 187
>gi|27777653 sperm acrosome associated 3 [Homo sapiens]
Length = 215
Score = 89.4 bits (220), Expect = 9e-19
Identities = 48/135 (35%), Positives = 82/135 (60%), Gaps = 6/135 (4%)
Query: 9 LVGILFPAILAKQFTKCELSQLLKD--IDGYGGIALPELICTMFHTSGYDTQAI-VENNE 65
L+ L P+ AK + +CEL+++L D +DGY G +L + +C + TSG++ A+ E +
Sbjct: 77 LLSCLLPSSEAKLYGRCELARVLHDFGLDGYRGYSLADWVCLAYFTSGFNAAALDYEADG 136
Query: 66 STEYGLFQISNKLWCKSSQVPQSRNICDISCDKFLDDDITDDIMCAKKIL-DIKGIDYWL 124
ST G+FQI+++ WC S+ P N+C + C L+ ++ D ++CA KI + +G+ YW
Sbjct: 137 STNNGIFQINSRRWC-SNLTPNVPNVCRMYCSDLLNPNLKDTVICAMKITQEPQGLGYWE 195
Query: 125 AHKALCTEK-LEQWL 138
A + C K L +W+
Sbjct: 196 AWRHHCQGKDLTEWV 210
>gi|118498373 sperm acrosome associated 5 [Homo sapiens]
Length = 159
Score = 81.6 bits (200), Expect = 2e-16
Identities = 44/139 (31%), Positives = 80/139 (57%), Gaps = 6/139 (4%)
Query: 5 VPLFLVGILFPAILAKQFTKCELSQLLK--DIDGYGGIALPELICTMFHTSGYDTQAIVE 62
V + L ++ + AK + +CEL+ L+ ++GY G + + +C + SG+DT +
Sbjct: 7 VVVTLATLMVVTVDAKIYERCELAARLERAGLNGYKGYGVGDWLCMAHYESGFDTAFVDH 66
Query: 63 NNE-STEYGLFQISNKLWCKSSQVPQSRNICDISCDKFLDDDITDDIMCAKKILDIK-GI 120
N + S+EYG+FQ+++ WC + P ++N+C + C L+ I DDI CAK+I+ + G+
Sbjct: 67 NPDGSSEYGIFQLNSAWWCDNGITP-TKNLCHMDCHDLLNRHILDDIRCAKQIVSSQNGL 125
Query: 121 DYWLAHKALCT-EKLEQWL 138
W + + C+ L +WL
Sbjct: 126 SAWTSWRLHCSGHDLSEWL 144
>gi|120952755 sperm acrosome associated 5B [Homo sapiens]
Length = 159
Score = 81.6 bits (200), Expect = 2e-16
Identities = 44/139 (31%), Positives = 80/139 (57%), Gaps = 6/139 (4%)
Query: 5 VPLFLVGILFPAILAKQFTKCELSQLLK--DIDGYGGIALPELICTMFHTSGYDTQAIVE 62
V + L ++ + AK + +CEL+ L+ ++GY G + + +C + SG+DT +
Sbjct: 7 VVVTLATLMVVTVDAKIYERCELAARLERAGLNGYKGYGVGDWLCMAHYESGFDTAFVDH 66
Query: 63 NNE-STEYGLFQISNKLWCKSSQVPQSRNICDISCDKFLDDDITDDIMCAKKILDIK-GI 120
N + S+EYG+FQ+++ WC + P ++N+C + C L+ I DDI CAK+I+ + G+
Sbjct: 67 NPDGSSEYGIFQLNSAWWCDNGITP-TKNLCHMDCHDLLNRHILDDIRCAKQIVSSQNGL 125
Query: 121 DYWLAHKALCT-EKLEQWL 138
W + + C+ L +WL
Sbjct: 126 SAWTSWRLHCSGHDLSEWL 144
>gi|9966905 lysozyme-like 6 [Homo sapiens]
Length = 148
Score = 75.9 bits (185), Expect = 1e-14
Identities = 43/137 (31%), Positives = 77/137 (56%), Gaps = 6/137 (4%)
Query: 7 LFLVGILFPAILAKQFTKCELSQLLK--DIDGYGGIALPELICTMFHTSGYDTQAIVENN 64
++LV A ++C+L+Q+L+ D+DG+ G +L + +C F S ++ I EN
Sbjct: 7 IYLVSSFLALNQASLISRCDLAQVLQLEDLDGFEGYSLSDWLCLAFVESKFNISKINENA 66
Query: 65 E-STEYGLFQISNKLWCKSSQVPQSRNICDISCDKFLDDDITDDIMCAKKILD-IKGIDY 122
+ S +YGLFQI++ WC + S N+C + C L+ ++ I CAK+I+ +G++
Sbjct: 67 DGSFDYGLFQINSHYWCNDYK-SYSENLCHVDCQDLLNPNLLAGIHCAKRIVSGARGMNN 125
Query: 123 WLAHKALCTEK-LEQWL 138
W+ + C+ + L WL
Sbjct: 126 WVEWRLHCSGRPLFYWL 142
>gi|21389465 lysozyme-like 4 [Homo sapiens]
Length = 146
Score = 60.8 bits (146), Expect = 4e-10
Identities = 44/145 (30%), Positives = 68/145 (46%), Gaps = 11/145 (7%)
Query: 1 MRFFVPLFLVGILFPAILAKQFTKCELSQLLKD--IDGYGGIALPELICTMFHTSGYDTQ 58
M+ V L L+G L A +C +++ L D +D + G +L +C + S ++
Sbjct: 1 MKASVVLSLLGYLVVPSGAYILGRCTVAKKLHDGGLDYFEGYSLENWVCLAYFESKFNPM 60
Query: 59 AIVENNES--TEYGLFQISNKLWCKSSQVPQSRNICDISCDKFLDDDITDDIMCAKKILD 116
AI EN T +GLFQ+ WC RN C +SC L+ ++ I CAK I+
Sbjct: 61 AIYENTREGYTGFGLFQMRGSDWCGD----HGRNRCHMSCSALLNPNLEKTIKCAKTIVK 116
Query: 117 IK-GIDYWLAHKALC--TEKLEQWL 138
K G+ W C ++ L +WL
Sbjct: 117 GKEGMGAWPTWSRYCQYSDTLARWL 141
>gi|56711286 hypothetical protein LOC340533 [Homo sapiens]
Length = 1516
Score = 30.8 bits (68), Expect = 0.39
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 5/39 (12%)
Query: 88 SRNICDIS---CDKFLDDDITDDIM--CAKKILDIKGID 121
S N C +S C+K DDDITDD + C+ K++ + ID
Sbjct: 1003 SSNYCSLSLKSCEKDGDDDITDDFLAHCSPKLVIQQSID 1041
>gi|18921093 transient receptor potential cation channel, subfamily
M, member 6 [Homo sapiens]
Length = 2022
Score = 27.7 bits (60), Expect = 3.3
Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 14/90 (15%)
Query: 58 QAIVENNESTEYGLFQISNKLWCKSSQVPQSRN------ICDISCDKFLDDDITDDIMCA 111
Q ++E +S + + + +K C S+ +P S+N +C + C + C
Sbjct: 4 QPVLERLQSQKSWIKGVFDKREC-STIIPSSKNPHRCTPVCQV-CQNLIR------CYCG 55
Query: 112 KKILDIKGIDYWLAHKALCTEKLEQWLCEK 141
+ I D GIDY A ++ EQW EK
Sbjct: 56 RLIGDHAGIDYSWTISAAKGKESEQWSVEK 85
>gi|22212943 ubiquitin-conjugating enzyme UBC3B [Homo sapiens]
Length = 238
Score = 27.7 bits (60), Expect = 3.3
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 79 WCKSSQVPQSRNICDISCDKFLDDDITDD 107
+C ++VP + N D+ D DDDI D+
Sbjct: 190 YCIKTKVPSNDNSSDLLYDDLYDDDIDDE 218
>gi|112789550 poly (ADP-ribose) polymerase family, member 4 [Homo
sapiens]
Length = 1724
Score = 26.9 bits (58), Expect = 5.7
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 12/82 (14%)
Query: 41 ALPELICTMFHTSGYDTQAIVENNESTEYG-----LFQISNKLWCKSSQVPQSRNICDIS 95
ALPE +C+ T+ D + E+ S E FQ S+ + S+V Q I
Sbjct: 1482 ALPEALCSQSRTTPVDLCLLEESVGSLEGSRCPVFAFQSSDTESDELSEVLQDSCFLQIK 1541
Query: 96 CDK-------FLDDDITDDIMC 110
CD FL+ D+I+C
Sbjct: 1542 CDTKDDSILCFLEVKEEDEIVC 1563
>gi|13173471 transmembrane protease, serine 3 isoform 1 [Homo
sapiens]
Length = 454
Score = 26.6 bits (57), Expect = 7.4
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 35 DGYGGIALPELICTMFHTSGYDT 57
D YGGI P ++C + T G D+
Sbjct: 374 DVYGGIISPSMLCAGYLTGGVDS 396
>gi|169174331 PREDICTED: hypothetical protein [Homo sapiens]
Length = 150
Score = 26.2 bits (56), Expect = 9.7
Identities = 15/45 (33%), Positives = 21/45 (46%)
Query: 62 ENNESTEYGLFQISNKLWCKSSQVPQSRNICDISCDKFLDDDITD 106
+ N ST GL L C+S VPQ +C + D+ + TD
Sbjct: 51 QGNGSTLTGLLHCPWLLPCRSLCVPQEGPVCRVQRDQGMSPQGTD 95
>gi|169172659 PREDICTED: hypothetical protein [Homo sapiens]
Length = 150
Score = 26.2 bits (56), Expect = 9.7
Identities = 15/45 (33%), Positives = 21/45 (46%)
Query: 62 ENNESTEYGLFQISNKLWCKSSQVPQSRNICDISCDKFLDDDITD 106
+ N ST GL L C+S VPQ +C + D+ + TD
Sbjct: 51 QGNGSTLTGLLHCPWLLPCRSLCVPQEGPVCRVQRDQGMSPQGTD 95
>gi|169172837 PREDICTED: hypothetical protein [Homo sapiens]
Length = 150
Score = 26.2 bits (56), Expect = 9.7
Identities = 15/45 (33%), Positives = 21/45 (46%)
Query: 62 ENNESTEYGLFQISNKLWCKSSQVPQSRNICDISCDKFLDDDITD 106
+ N ST GL L C+S VPQ +C + D+ + TD
Sbjct: 51 QGNGSTLTGLLHCPWLLPCRSLCVPQEGPVCRVQRDQGMSPQGTD 95
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.325 0.141 0.449
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,403,907
Number of Sequences: 37866
Number of extensions: 208537
Number of successful extensions: 504
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 469
Number of HSP's gapped (non-prelim): 17
length of query: 142
length of database: 18,247,518
effective HSP length: 92
effective length of query: 50
effective length of database: 14,763,846
effective search space: 738192300
effective search space used: 738192300
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.