Guide to the Human Genome
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Name: LOC100129596 Sequence: fasta or formatted (150aa) NCBI GI: 169172659
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {150aa} PREDICTED: hypothetical protein
alt mRNA {150aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7         10           2
 C cysteine            5.3          8           1
 D aspartate           2.7          4           1
 E glutamate           1.3          2           1
 F phenylalanine       1.3          2           1
 G glycine            17.3         26           2
 H histidine           2.0          3           1
 I isoleucine          0.7          1           1
 K lysine              2.0          3           1
 L leucine            12.7         19           2
 M methionine          1.3          2           1
 N asparagine          2.0          3           1
 P proline            12.0         18           2
 Q glutamine           8.7         13           1
 R arginine            7.3         11           1
 S serine              6.7         10           1
 T threonine           2.7          4           1
 V valine              4.7          7           1
 W tryptophan          2.7          4           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100129596          1.000   PREDICTED: hypothetical protein 
LOC100129596          1.000   PREDICTED: hypothetical protein 
KPRP                  0.026   keratinocyte proline-rich protein 
LOC100288797          0.017   PREDICTED: hypothetical protein XP_002344208 isofor...
LOC100128942          0.013   PREDICTED: hypothetical protein 
LOC100292721          0.013   PREDICTED: hypothetical protein 
LOC100128942          0.013   PREDICTED: hypothetical protein 
ANKRD33B              0.013   PREDICTED: ankyrin repeat domain 33B 
LOC100128942          0.013   PREDICTED: hypothetical protein 
IMMT                  0.013   inner membrane protein, mitochondrial isoform 3 [Ho...
IMMT                  0.013   inner membrane protein, mitochondrial isoform 2 [Ho...
IMMT                  0.013   inner membrane protein, mitochondrial isoform 1 [Ho...
MEX3D                 0.013   ring finger and KH domain containing 1 
ADAMTS13              0.013   ADAM metallopeptidase with thrombospondin type 1 mot...
ADAMTS13              0.013   ADAM metallopeptidase with thrombospondin type 1 mot...
LINGO4                0.013   leucine rich repeat and Ig domain containing 4 [Homo...
WTIP                  0.013   Wilms tumor 1 interacting protein 
LOC100291571          0.010   PREDICTED: hypothetical protein XP_002345427 isofor...
LOC100292262          0.010   PREDICTED: hypothetical protein 
LOC100292514          0.010   PREDICTED: hypothetical protein 
LOC100291033          0.010   PREDICTED: hypothetical protein XP_002348044 isofor...
LOC100290395          0.010   PREDICTED: hypothetical protein XP_002346998 
LOC100290880          0.010   PREDICTED: hypothetical protein XP_002346484 
LOC100288000          0.010   PREDICTED: hypothetical protein XP_002342324 
SEMA4C                0.010   semaphorin 4C 
IRS2                  0.010   insulin receptor substrate 2 
NEU4                  0.010   sialidase 4 
C11orf87              0.010   hypothetical protein LOC399947 
PRB4                  0.010   proline-rich protein BstNI subfamily 4 precursor [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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