Guide to the Human Genome
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Name: GABRA1 Sequence: fasta or formatted (456aa) NCBI GI: 189083726
Description:

gamma-aminobutyric acid (GABA) A receptor, alpha 1 precursor

Referenced in:

GABA and Glycine

Other entries for this name:
alt mRNA [456aa] gamma-aminobutyric acid (GABA) A receptor, alpha 1 precursor
alt mRNA [456aa] gamma-aminobutyric acid (GABA) A receptor, alpha 1 precursor
alt mRNA [456aa] gamma-aminobutyric acid (GABA) A receptor, alpha 1 precursor
alt mRNA [456aa] gamma-aminobutyric acid (GABA) A receptor, alpha 1 precursor
alt mRNA [456aa] gamma-aminobutyric acid (GABA) A receptor, alpha 1 precursor
alt mRNA [456aa] gamma-aminobutyric acid (GABA) A receptor, alpha 1 precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.4         29           1
 C cysteine            1.1          5           1
 D aspartate           5.0         23           1
 E glutamate           4.6         21           1
 F phenylalanine       5.0         23           2
 G glycine             4.8         22           1
 H histidine           1.8          8           1
 I isoleucine          4.4         20           1
 K lysine              6.6         30           2
 L leucine             9.6         44           3
 M methionine          2.9         13           1
 N asparagine          3.7         17           2
 P proline             6.4         29           2
 Q glutamine           2.2         10           1
 R arginine            5.7         26           1
 S serine              6.4         29           2
 T threonine           9.6         44           2
 V valine              7.7         35           3
 W tryptophan          2.0          9           1
 Y tyrosine            4.2         19           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   gamma-aminobutyric acid (GABA) A receptor, alpha 1 ... 
GABRA1                1.000   gamma-aminobutyric acid (GABA) A receptor, alpha 1 ...
GABRA1                1.000   gamma-aminobutyric acid (GABA) A receptor, alpha 1 ...
GABRA1                1.000   gamma-aminobutyric acid (GABA) A receptor, alpha 1 ...
GABRA1                1.000   gamma-aminobutyric acid (GABA) A receptor, alpha 1 ...
GABRA1                1.000   gamma-aminobutyric acid (GABA) A receptor, alpha 1 ...
GABRA1                1.000   gamma-aminobutyric acid (GABA) A receptor, alpha 1 p...
GABRA2                0.735   gamma-aminobutyric acid A receptor, alpha 2 
GABRA2                0.735   gamma-aminobutyric acid A receptor, alpha 2 precurs...
GABRA5                0.683   gamma-aminobutyric acid (GABA) A receptor, alpha 5 pr...
GABRA3                0.679   gamma-aminobutyric acid A receptor, alpha 3 precursor...
GABRA6                0.529   gamma-aminobutyric acid A receptor, alpha 6 precurs...
GABRA4                0.511   gamma-aminobutyric acid A receptor, alpha 4 precurso...
GABRG2                0.390   gamma-aminobutyric acid A receptor, gamma 2 isoform ...
GABRG2                0.385   gamma-aminobutyric acid A receptor, gamma 2 isoform ...
GABRG1                0.378   gamma-aminobutyric acid A receptor, gamma 1 precurso...
GABRG2                0.367   gamma-aminobutyric acid A receptor, gamma 2 isoform...
GABRG3                0.355   gamma-aminobutyric acid (GABA) A receptor, gamma 3 ...
GABRE                 0.302   gamma-aminobutyric acid (GABA) A receptor, epsilon p...
GLRA2                 0.277   glycine receptor, alpha 2 isoform A 
GLRA3                 0.277   glycine receptor, alpha 3 isoform b 
GLRA2                 0.277   glycine receptor, alpha 2 isoform A 
GLRA2                 0.277   glycine receptor, alpha 2 isoform B 
GABRB2                0.277   gamma-aminobutyric acid (GABA) A receptor, beta 2 iso...
GLRA1                 0.272   glycine receptor, alpha 1 isoform 1 precursor [Homo...
GLRA1                 0.270   glycine receptor, alpha 1 isoform 2 precursor [Homo...
GLRA3                 0.269   glycine receptor, alpha 3 isoform a 
GABRB1                0.268   gamma-aminobutyric acid (GABA) A receptor, beta 1 p...
GABRB3                0.265   gamma-aminobutyric acid (GABA) A receptor, beta 3 is...
GABRB3                0.265   gamma-aminobutyric acid (GABA) A receptor, beta 3 iso...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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