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Search of human proteins with 4503507
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4503507 eukaryotic translation initiation factor 2, subunit
3 gamma, 52kDa [Homo sapiens]
(472 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4503507 eukaryotic translation initiation factor 2, subunit 3... 934 0.0
gi|34147630 Tu translation elongation factor, mitochondrial prec... 93 5e-19
gi|54607086 eukaryotic elongation factor, selenocysteine-tRNA-sp... 92 1e-18
gi|194018522 G1 to S phase transition 1 isoform 3 [Homo sapiens] 51 2e-06
gi|194097354 G1 to S phase transition 1 isoform 2 [Homo sapiens] 51 2e-06
gi|194018520 G1 to S phase transition 1 isoform 1 [Homo sapiens] 51 2e-06
gi|46094014 peptide chain release factor 3 [Homo sapiens] 51 3e-06
gi|239757543 PREDICTED: similar to eukaryotic translation elonga... 46 6e-05
gi|4503475 eukaryotic translation elongation factor 1 alpha 2 [H... 46 6e-05
gi|4503471 eukaryotic translation elongation factor 1 alpha 1 [H... 45 1e-04
gi|157426893 GUF1 GTPase homolog [Homo sapiens] 45 1e-04
gi|223555963 Hsp70 subfamily B suppressor 1-like protein isoform... 41 0.003
gi|5729864 Hsp70 subfamily B suppressor 1-like protein isoform 1... 41 0.003
gi|53729339 mitochondrial translational initiation factor 2 prec... 36 0.087
gi|53729337 mitochondrial translational initiation factor 2 prec... 36 0.087
gi|82546879 GTP binding protein 1 [Homo sapiens] 32 0.96
gi|84043963 eukaryotic translation initiation factor 5B [Homo sa... 31 2.1
gi|13375901 PRKR interacting protein 1 (IL11 inducible) [Homo sa... 31 2.8
gi|56550057 CCR4-NOT transcription complex, subunit 4 isoform a ... 30 3.6
gi|56550059 CCR4-NOT transcription complex, subunit 4 isoform b ... 30 3.6
gi|155030218 PDS5, regulator of cohesion maintenance, homolog A ... 30 4.7
gi|155030216 PDS5, regulator of cohesion maintenance, homolog A ... 30 4.7
>gi|4503507 eukaryotic translation initiation factor 2, subunit 3
gamma, 52kDa [Homo sapiens]
Length = 472
Score = 934 bits (2414), Expect = 0.0
Identities = 472/472 (100%), Positives = 472/472 (100%)
Query: 1 MAGGEAGVTLGQPHLSRQDLTTLDVTKLTPLSHEVISRQATINIGTIGHVAHGKSTVVKA 60
MAGGEAGVTLGQPHLSRQDLTTLDVTKLTPLSHEVISRQATINIGTIGHVAHGKSTVVKA
Sbjct: 1 MAGGEAGVTLGQPHLSRQDLTTLDVTKLTPLSHEVISRQATINIGTIGHVAHGKSTVVKA 60
Query: 61 ISGVHTVRFKNELERNITIKLGYANAKIYKLDDPSCPRPECYRSCGSSTPDEFPTDIPGT 120
ISGVHTVRFKNELERNITIKLGYANAKIYKLDDPSCPRPECYRSCGSSTPDEFPTDIPGT
Sbjct: 61 ISGVHTVRFKNELERNITIKLGYANAKIYKLDDPSCPRPECYRSCGSSTPDEFPTDIPGT 120
Query: 121 KGNFKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAIEIM 180
KGNFKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAIEIM
Sbjct: 121 KGNFKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAIEIM 180
Query: 181 KLKHILILQNKIDLVKESQAKEQYEQILAFVQGTVAEGAPIIPISAQLKYNIEVVCEYIV 240
KLKHILILQNKIDLVKESQAKEQYEQILAFVQGTVAEGAPIIPISAQLKYNIEVVCEYIV
Sbjct: 181 KLKHILILQNKIDLVKESQAKEQYEQILAFVQGTVAEGAPIIPISAQLKYNIEVVCEYIV 240
Query: 241 KKIPVPPRDFTSEPRLIVIRSFDVNKPGCEVDDLKGGVAGGSILKGVLKVGQEIEVRPGI 300
KKIPVPPRDFTSEPRLIVIRSFDVNKPGCEVDDLKGGVAGGSILKGVLKVGQEIEVRPGI
Sbjct: 241 KKIPVPPRDFTSEPRLIVIRSFDVNKPGCEVDDLKGGVAGGSILKGVLKVGQEIEVRPGI 300
Query: 301 VSKDSEGKLMCKPIFSKIVSLFAEHNDLQYAAPGGLIGVGTKIDPTLCRADRMVGQVLGA 360
VSKDSEGKLMCKPIFSKIVSLFAEHNDLQYAAPGGLIGVGTKIDPTLCRADRMVGQVLGA
Sbjct: 301 VSKDSEGKLMCKPIFSKIVSLFAEHNDLQYAAPGGLIGVGTKIDPTLCRADRMVGQVLGA 360
Query: 361 VGALPEIFTELEISYFLLRRLLGVRTEGDKKAAKVQKLSKNEVLMVNIGSLSTGGRVSAV 420
VGALPEIFTELEISYFLLRRLLGVRTEGDKKAAKVQKLSKNEVLMVNIGSLSTGGRVSAV
Sbjct: 361 VGALPEIFTELEISYFLLRRLLGVRTEGDKKAAKVQKLSKNEVLMVNIGSLSTGGRVSAV 420
Query: 421 KADLGKIVLTNPVCTEVGEKIALSRRVEKHWRLIGWGQIRRGVTIKPTVDDD 472
KADLGKIVLTNPVCTEVGEKIALSRRVEKHWRLIGWGQIRRGVTIKPTVDDD
Sbjct: 421 KADLGKIVLTNPVCTEVGEKIALSRRVEKHWRLIGWGQIRRGVTIKPTVDDD 472
>gi|34147630 Tu translation elongation factor, mitochondrial
precursor [Homo sapiens]
Length = 455
Score = 93.2 bits (230), Expect = 5e-19
Identities = 77/268 (28%), Positives = 124/268 (46%), Gaps = 46/268 (17%)
Query: 42 INIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKLDDPSCPRPEC 101
+N+GTIGHV HGK+T+ AI+ I + G A K Y+ D + P
Sbjct: 61 VNVGTIGHVDHGKTTLTAAIT-------------KILAEGGGAKFKKYEEID-NAPEERA 106
Query: 102 YRSCGSSTPDEFPTDIPGTKGNFKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAG 161
++ E+ T RH + DCPGH + M+ G A +D +L++A
Sbjct: 107 RGITINAAHVEYST----------AARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAA 156
Query: 162 NESCPQPQTSEHLAAIEIMKLKHILILQNKIDLVKESQAKEQYE---QILAFVQGTVAEG 218
N+ P PQT EHL + ++H+++ NK D V++S+ E E + L G E
Sbjct: 157 NDG-PMPQTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEE 215
Query: 219 APIIPISAQLKY----------NIEVVCEYIVKKIPVPPRDFTSEPRLIVIRSFDVNKPG 268
P+I SA +++ + + + IPVP RD +P L+ + + + PG
Sbjct: 216 TPVIVGSALCALEGRDPELGLKSVQKLLDAVDTYIPVPARDL-EKPFLLPVEAV-YSVPG 273
Query: 269 CEVDDLKGGVAGGSILKGVLKVGQEIEV 296
+G V G++ +G+LK G E E+
Sbjct: 274 ------RGTVVTGTLERGILKKGDECEL 295
>gi|54607086 eukaryotic elongation factor,
selenocysteine-tRNA-specific [Homo sapiens]
Length = 596
Score = 92.0 bits (227), Expect = 1e-18
Identities = 88/329 (26%), Positives = 151/329 (45%), Gaps = 54/329 (16%)
Query: 38 RQATINIGTIGHVAHGKSTVVKAISGV-HTVRFKNE---LERNITIKLGYANAKIYKLDD 93
R+ +N+G +GH+ GK+ + +A+S T F + ER IT+ LG++ +
Sbjct: 4 RRVNVNVGVLGHIDSGKTALARALSTTASTAAFDKQPQSRERGITLDLGFSCFSV----- 58
Query: 94 PSCPRPECYRSCGSSTPDEFPTDIPGTKGNFKLVRHVSFVDCPGHDILMATMLNGAAVMD 153
P P RS S P EF + + V+ VDCPGH L+ T++ GA ++D
Sbjct: 59 ---PLPARLRS---SLP-EFQAAPEAEPEPGEPLLQVTLVDCPGHASLIRTIIGGAQIID 111
Query: 154 AALLLIAGNESCPQPQTSEHLAAIEIMKLKHILILQNKIDLVKESQAKEQYEQILAFVQG 213
+L+I + Q Q++E L +I K +++L NKIDL+ E + + +++ +Q
Sbjct: 112 LMMLVIDVTKGM-QTQSAECLVIGQIACQKLVVVL-NKIDLLPEGKRQAAIDKMTKKMQK 169
Query: 214 TVA----EGAPIIPISA----------QLKYNIEVVCEYIVKKIPVPPRDFTSEPRLIVI 259
T+ GAPIIP++A + I + E + +I +P RD + + V
Sbjct: 170 TLENTKFRGAPIIPVAAKPGGPEAPETEAPQGIPELIELLTSQISIPTRDPSGPFLMSVD 229
Query: 260 RSFDVNKPGCEVDDLKGGVAGGSILKGVLKVGQEIEVRPGIVSKDSEGKLMCKPIFSKIV 319
F + +G V G+IL G + +G +E+ P + + K+
Sbjct: 230 HCFSIKG--------QGTVMTGTILSGSISLGDSVEI-PAL------------KVVKKVK 268
Query: 320 SLFAEHNDLQYAAPGGLIGV-GTKIDPTL 347
S+ H + A G +G+ T+ DP L
Sbjct: 269 SMQMFHMPITSAMQGDRLGICVTQFDPKL 297
>gi|194018522 G1 to S phase transition 1 isoform 3 [Homo sapiens]
Length = 499
Score = 51.2 bits (121), Expect = 2e-06
Identities = 46/175 (26%), Positives = 76/175 (43%), Gaps = 23/175 (13%)
Query: 42 INIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKLDDPSCPRPEC 101
+N+ IGHV GKST+ I + + K LE+ Y+ + R
Sbjct: 75 VNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEK-------------YEREAKEKNRETW 121
Query: 102 YRSCGSSTP----DEFPTDIPGTKGNFKLVRHVSFVDCPGHDILMATMLNGAAVMDAALL 157
Y S T D+ T G +H + +D PGH + M+ GA+ D A+L
Sbjct: 122 YLSWALDTNQEERDKGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVL 181
Query: 158 LIAGNESCPQP------QTSEHLAAIEIMKLKHILILQNKIDLVKESQAKEQYEQ 206
+I+ + + QT EH + +KH+++L NK+D + + E+YE+
Sbjct: 182 VISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNERYEE 236
>gi|194097354 G1 to S phase transition 1 isoform 2 [Homo sapiens]
Length = 636
Score = 51.2 bits (121), Expect = 2e-06
Identities = 46/175 (26%), Positives = 76/175 (43%), Gaps = 23/175 (13%)
Query: 42 INIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKLDDPSCPRPEC 101
+N+ IGHV GKST+ I + + K LE+ Y+ + R
Sbjct: 212 VNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEK-------------YEREAKEKNRETW 258
Query: 102 YRSCGSSTP----DEFPTDIPGTKGNFKLVRHVSFVDCPGHDILMATMLNGAAVMDAALL 157
Y S T D+ T G +H + +D PGH + M+ GA+ D A+L
Sbjct: 259 YLSWALDTNQEERDKGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVL 318
Query: 158 LIAGNESCPQP------QTSEHLAAIEIMKLKHILILQNKIDLVKESQAKEQYEQ 206
+I+ + + QT EH + +KH+++L NK+D + + E+YE+
Sbjct: 319 VISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNERYEE 373
>gi|194018520 G1 to S phase transition 1 isoform 1 [Homo sapiens]
Length = 637
Score = 51.2 bits (121), Expect = 2e-06
Identities = 46/175 (26%), Positives = 76/175 (43%), Gaps = 23/175 (13%)
Query: 42 INIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKLDDPSCPRPEC 101
+N+ IGHV GKST+ I + + K LE+ Y+ + R
Sbjct: 213 VNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEK-------------YEREAKEKNRETW 259
Query: 102 YRSCGSSTP----DEFPTDIPGTKGNFKLVRHVSFVDCPGHDILMATMLNGAAVMDAALL 157
Y S T D+ T G +H + +D PGH + M+ GA+ D A+L
Sbjct: 260 YLSWALDTNQEERDKGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVL 319
Query: 158 LIAGNESCPQP------QTSEHLAAIEIMKLKHILILQNKIDLVKESQAKEQYEQ 206
+I+ + + QT EH + +KH+++L NK+D + + E+YE+
Sbjct: 320 VISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNERYEE 374
>gi|46094014 peptide chain release factor 3 [Homo sapiens]
Length = 628
Score = 50.8 bits (120), Expect = 3e-06
Identities = 46/175 (26%), Positives = 77/175 (44%), Gaps = 23/175 (13%)
Query: 42 INIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKLDDPSCPRPEC 101
+N+ IGHV GKST+ I + + K LE+ Y+ + R
Sbjct: 204 VNVVFIGHVDAGKSTIGGQIMFLTGMVDKRTLEK-------------YEREAKEKNRETW 250
Query: 102 YRSCGSSTPDE---FPTDIPGTKGNFKLVR-HVSFVDCPGHDILMATMLNGAAVMDAALL 157
Y S T E + + F+ R H + +D PGH + M+ GA+ D A+L
Sbjct: 251 YLSWALDTNQEERDKGKTVEVGRAYFETERKHFTILDAPGHKSFVPNMIGGASQADLAVL 310
Query: 158 LIAGNESCPQP------QTSEHLAAIEIMKLKHILILQNKIDLVKESQAKEQYEQ 206
+I+ + + QT EH + +KH+++L NK+D + + E+YE+
Sbjct: 311 VISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSIERYEE 365
>gi|239757543 PREDICTED: similar to eukaryotic translation
elongation factor 1 alpha 2 [Homo sapiens]
Length = 444
Score = 46.2 bits (108), Expect = 6e-05
Identities = 25/109 (22%), Positives = 53/109 (48%), Gaps = 12/109 (11%)
Query: 129 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMKL 182
+++ +D PGH + M+ G + D A+L++A QT EH + +
Sbjct: 86 YITIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLGV 145
Query: 183 KHILILQNKIDLVKESQAKEQYEQILAFVQGTVAE------GAPIIPIS 225
K +++ NK+D + + ++++Y++I+ V + + P +PIS
Sbjct: 146 KQLIVGVNKMDSTEPAYSEKRYDEIVKEVSAYIKKIGYNPATVPFVPIS 194
>gi|4503475 eukaryotic translation elongation factor 1 alpha 2 [Homo
sapiens]
Length = 463
Score = 46.2 bits (108), Expect = 6e-05
Identities = 25/109 (22%), Positives = 53/109 (48%), Gaps = 12/109 (11%)
Query: 129 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMKL 182
+++ +D PGH + M+ G + D A+L++A QT EH + +
Sbjct: 86 YITIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLGV 145
Query: 183 KHILILQNKIDLVKESQAKEQYEQILAFVQGTVAE------GAPIIPIS 225
K +++ NK+D + + ++++Y++I+ V + + P +PIS
Sbjct: 146 KQLIVGVNKMDSTEPAYSEKRYDEIVKEVSAYIKKIGYNPATVPFVPIS 194
>gi|4503471 eukaryotic translation elongation factor 1 alpha 1 [Homo
sapiens]
Length = 462
Score = 45.1 bits (105), Expect = 1e-04
Identities = 55/248 (22%), Positives = 95/248 (38%), Gaps = 54/248 (21%)
Query: 129 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMKL 182
+V+ +D PGH + M+ G + D A+L++A QT EH + +
Sbjct: 86 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLGV 145
Query: 183 KHILILQNKIDLVKESQAKEQYEQI-----------------LAFVQGTVAEGAPIIPIS 225
K +++ NK+D + ++++YE+I +AFV + G ++ S
Sbjct: 146 KQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGYNPDTVAFVPISGWNGDNMLEPS 205
Query: 226 AQLKY-----------NIEVVCEYIVKKIPVPPRDFTSEPRLIVIRSFDVNKPGCEVDDL 274
A + + N +PP T +P + ++ DV K G
Sbjct: 206 ANMPWFKGWKVTRKDGNASGTTLLEALDCILPPTRPTDKPLRLPLQ--DVYKIGG----- 258
Query: 275 KGGVAGGSILKGVLKVGQEIEVRPGIVSKDSEGKLMCKPIFSKIVSLFAEHNDLQYAAPG 334
G V G + GVLK G + P V+ +++ S+ H L A PG
Sbjct: 259 IGTVPVGRVETGVLKPGMVVTFAPVNVT-------------TEVKSVEMHHEALSEALPG 305
Query: 335 GLIGVGTK 342
+G K
Sbjct: 306 DNVGFNVK 313
>gi|157426893 GUF1 GTPase homolog [Homo sapiens]
Length = 669
Score = 45.1 bits (105), Expect = 1e-04
Identities = 55/254 (21%), Positives = 97/254 (38%), Gaps = 39/254 (15%)
Query: 43 NIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKLDDPSCPRPECY 102
N + HV HGKST+ + + K + + + KL +
Sbjct: 70 NFSIVAHVDHGKSTLADRLLELTGTIDKTKNNKQVLDKL------------------QVE 111
Query: 103 RSCGSSTPDEFPTDIPGTKGNFKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGN 162
R G + + + +G L+ + +D PGH + + LL++ N
Sbjct: 112 RERGITVKAQTASLFYNCEGKQYLL---NLIDTPGHVDFSYEVSRSLSACQGVLLVVDAN 168
Query: 163 ESCPQPQTSEHLAAIEIMKLKHILILQNKIDL--VKESQAKEQYEQILAFVQGTVAEGAP 220
E + A E ++ + NKIDL + + Q E++
Sbjct: 169 EGIQAQTVANFFLAFEAQL--SVIPVINKIDLKNADPERVENQIEKVFDIPSDEC----- 221
Query: 221 IIPISAQLKYNIEVVCEYIVKKIPVPPRDFTSEPRLIVIRSFDVNKPGCEVDDLKGGVAG 280
I ISA+L N+E V + I+++IP PP+ P ++ FD D +G +A
Sbjct: 222 -IKISAKLGTNVESVLQAIIERIP-PPKVHRKNPLRALV--FD-----STFDQYRGVIAN 272
Query: 281 GSILKGVLKVGQEI 294
++ GV+ G +I
Sbjct: 273 VALFDGVVSKGDKI 286
>gi|223555963 Hsp70 subfamily B suppressor 1-like protein isoform 2
[Homo sapiens]
Length = 642
Score = 40.8 bits (94), Expect = 0.003
Identities = 47/178 (26%), Positives = 79/178 (44%), Gaps = 29/178 (16%)
Query: 42 INIGTIGHVAHGKSTVVKA---ISGVHTVRFKNELERNITIKLGYAN-AKIYKLDDPSCP 97
+N+ IGHV GKST++ + G R ++ E+ + K G A+ A + LD+
Sbjct: 219 LNLVVIGHVDAGKSTLMGHMLYLLGNINKRTMHKYEQE-SKKAGKASFAYAWVLDETGEE 277
Query: 98 RPECYRSCGSSTPDEFPTDIPGTKGNFKLVRHVSFVDCPGHDILMATMLNGAAVMDAALL 157
R T E T + ++ +D PGH + M+ GAA D A+L
Sbjct: 278 RERGVTMDVGMTKFETTTKV------------ITLMDAPGHKDFIPNMITGAAQADVAVL 325
Query: 158 LI--------AGNESCPQPQTSEHLAAIEIMKLKHILILQNKIDLVKESQAKEQYEQI 207
++ AG E+ QT EH + + + + + NK+D V Q E++++I
Sbjct: 326 VVDASRGEFEAGFET--GGQTREHGLLVRSLGVTQLAVAVNKMDQVNWQQ--ERFQEI 379
>gi|5729864 Hsp70 subfamily B suppressor 1-like protein isoform 1
[Homo sapiens]
Length = 684
Score = 40.8 bits (94), Expect = 0.003
Identities = 47/178 (26%), Positives = 79/178 (44%), Gaps = 29/178 (16%)
Query: 42 INIGTIGHVAHGKSTVVKA---ISGVHTVRFKNELERNITIKLGYAN-AKIYKLDDPSCP 97
+N+ IGHV GKST++ + G R ++ E+ + K G A+ A + LD+
Sbjct: 261 LNLVVIGHVDAGKSTLMGHMLYLLGNINKRTMHKYEQE-SKKAGKASFAYAWVLDETGEE 319
Query: 98 RPECYRSCGSSTPDEFPTDIPGTKGNFKLVRHVSFVDCPGHDILMATMLNGAAVMDAALL 157
R T E T + ++ +D PGH + M+ GAA D A+L
Sbjct: 320 RERGVTMDVGMTKFETTTKV------------ITLMDAPGHKDFIPNMITGAAQADVAVL 367
Query: 158 LI--------AGNESCPQPQTSEHLAAIEIMKLKHILILQNKIDLVKESQAKEQYEQI 207
++ AG E+ QT EH + + + + + NK+D V Q E++++I
Sbjct: 368 VVDASRGEFEAGFET--GGQTREHGLLVRSLGVTQLAVAVNKMDQVNWQQ--ERFQEI 421
>gi|53729339 mitochondrial translational initiation factor 2
precursor [Homo sapiens]
Length = 727
Score = 35.8 bits (81), Expect = 0.087
Identities = 29/113 (25%), Positives = 55/113 (48%), Gaps = 5/113 (4%)
Query: 130 VSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAIEIMKLKHILILQ 189
++F+D PGH A GA V D +L++A ++ QT E + + ++ I++
Sbjct: 230 ITFLDTPGHAAFSAMRARGAQVTDIVVLVVAADDGV-MKQTVESIQHAKDAQVP-IILAV 287
Query: 190 NKIDLVKESQAKEQYEQILAFVQGTVAEGAPI--IPISAQLKYNIEVVCEYIV 240
NK D E+ ++ +++LA+ G + +P+SA N+ + E V
Sbjct: 288 NKCDKA-EADPEKVKKELLAYDVVCEDYGGDVQAVPVSALTGDNLMALAEATV 339
>gi|53729337 mitochondrial translational initiation factor 2
precursor [Homo sapiens]
Length = 727
Score = 35.8 bits (81), Expect = 0.087
Identities = 29/113 (25%), Positives = 55/113 (48%), Gaps = 5/113 (4%)
Query: 130 VSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAIEIMKLKHILILQ 189
++F+D PGH A GA V D +L++A ++ QT E + + ++ I++
Sbjct: 230 ITFLDTPGHAAFSAMRARGAQVTDIVVLVVAADDGV-MKQTVESIQHAKDAQVP-IILAV 287
Query: 190 NKIDLVKESQAKEQYEQILAFVQGTVAEGAPI--IPISAQLKYNIEVVCEYIV 240
NK D E+ ++ +++LA+ G + +P+SA N+ + E V
Sbjct: 288 NKCDKA-EADPEKVKKELLAYDVVCEDYGGDVQAVPVSALTGDNLMALAEATV 339
>gi|82546879 GTP binding protein 1 [Homo sapiens]
Length = 669
Score = 32.3 bits (72), Expect = 0.96
Identities = 42/206 (20%), Positives = 82/206 (39%), Gaps = 30/206 (14%)
Query: 42 INIGTIGHVAHGKSTVV-----------KAISGVHTVRFKNELERNITIKLGYANAKIYK 90
+ + +G+V GKST++ + + R K+E+E T +G I
Sbjct: 161 VRVAVVGNVDAGKSTLLGVLTHGELDNGRGFARQKLFRHKHEIESGRTSSVGN---DILG 217
Query: 91 LDDPSCPRPECYRSCGSSTPDEFPTDIPGTKGNFKLVRHVSFVDCPGHDILMATMLNGAA 150
D + PD + TK K + ++F+D GH+ + T + G
Sbjct: 218 FDSEGNV---------VNKPDSHGGSLEWTKICEKSTKVITFIDLAGHEKYLKTTVFGMT 268
Query: 151 --VMDAALLLIAGNESCPQPQTSEHLAAIEIMKLKHILILQNKIDLVKESQAKEQYEQIL 208
+ D +L++ N T EHL + + + ++ KID+ + +E + +
Sbjct: 269 GHLPDFCMLMVGSNAGI-VGMTKEHLGLALALNVP-VFVVVTKIDMCPANILQETLKLLQ 326
Query: 209 AFVQGTVAEGAPIIPISAQLKYNIEV 234
++ + G IP+ Q K ++ V
Sbjct: 327 RLLK---SPGCRKIPVLVQSKDDVIV 349
>gi|84043963 eukaryotic translation initiation factor 5B [Homo
sapiens]
Length = 1220
Score = 31.2 bits (69), Expect = 2.1
Identities = 34/150 (22%), Positives = 63/150 (42%), Gaps = 24/150 (16%)
Query: 44 IGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKLDDPSCPRPECYR 103
I +GHV GK+ ++ + H ++ IT ++G N + +++ +
Sbjct: 634 ICVLGHVDTGKTKILDKLRHTHV---QDGEAGGITQQIGATNVPLEAINE---------Q 681
Query: 104 SCGSSTPDEFPTDIPGTKGNFKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNE 163
+ D IPG + +D PGH+ G+++ D A+L++
Sbjct: 682 TKMIKNFDRENVRIPG----------MLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMH 731
Query: 164 SCPQPQTSEHLAAIEIMKLKHILILQNKID 193
+PQT E + ++ K I+ L NKID
Sbjct: 732 GL-EPQTIESINLLKSKKCPFIVAL-NKID 759
>gi|13375901 PRKR interacting protein 1 (IL11 inducible) [Homo
sapiens]
Length = 184
Score = 30.8 bits (68), Expect = 2.8
Identities = 34/140 (24%), Positives = 57/140 (40%), Gaps = 11/140 (7%)
Query: 87 KIYKLDDPSCPRPECYRSCGSSTPDEFPTDIPGT-----KGNFKLVRHVSFVDCPGHDIL 141
++ K D + P PE P EF D+ G+ G F + RH+ + D +
Sbjct: 37 RLMKNPDKAVPIPEKMSEWAPRPPPEFVRDVMGSSAGAGSGEFHVYRHLRRREYQRQDYM 96
Query: 142 MATMLNGAAVMDAAL-LLIAGNESCPQPQTSEHLAAIEIMKLKHILILQNKIDLVKE--- 197
A + +DA + N+ + QT++ + +K K +L + K++ K+
Sbjct: 97 DA--MAEKQKLDAEFQKRLEKNKIAAEEQTAKRRKKRQKLKEKKLLAKKMKLEQKKQEGP 154
Query: 198 SQAKEQYEQILAFVQGTVAE 217
Q KEQ A GT E
Sbjct: 155 GQPKEQGSSSSAEASGTEEE 174
>gi|56550057 CCR4-NOT transcription complex, subunit 4 isoform a
[Homo sapiens]
Length = 639
Score = 30.4 bits (67), Expect = 3.6
Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Query: 33 HEVISRQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELE---RNITIKLGYANAKIY 89
H+V+ +T G+ G A T +++ + ++ N + R + LG Y
Sbjct: 139 HKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKASLGTTKYCSY 198
Query: 90 KLDDPSCPRPEC 101
L + CP+P+C
Sbjct: 199 FLKNMQCPKPDC 210
>gi|56550059 CCR4-NOT transcription complex, subunit 4 isoform b
[Homo sapiens]
Length = 572
Score = 30.4 bits (67), Expect = 3.6
Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Query: 33 HEVISRQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELE---RNITIKLGYANAKIY 89
H+V+ +T G+ G A T +++ + ++ N + R + LG Y
Sbjct: 139 HKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKASLGTTKYCSY 198
Query: 90 KLDDPSCPRPEC 101
L + CP+P+C
Sbjct: 199 FLKNMQCPKPDC 210
>gi|155030218 PDS5, regulator of cohesion maintenance, homolog A
isoform 2 [Homo sapiens]
Length = 1297
Score = 30.0 bits (66), Expect = 4.7
Identities = 28/106 (26%), Positives = 51/106 (48%), Gaps = 10/106 (9%)
Query: 329 QYAAPGGLIGVGTKIDPTLCRADRMVGQVLGAVGA-----LPEIFTELEISYFLLRRLLG 383
Q+A+P + V I L DR G+ G + + PE+ +++ L+R LLG
Sbjct: 750 QFASPMKSV-VANFIVKDLLMNDRSTGEKNGKLWSPDEEVSPEVLAKVQAIKLLVRWLLG 808
Query: 384 VRTEGDKKAAKVQKLSKNEVLMVNIGSLSTGGRVSAVKADLGKIVL 429
++ K A +L ++V+ G L+ R+S K+D+ ++ L
Sbjct: 809 MKNNQSKSANSTLRLL--SAMLVSEGDLTEQKRIS--KSDMSRLRL 850
>gi|155030216 PDS5, regulator of cohesion maintenance, homolog A
isoform 1 [Homo sapiens]
Length = 1337
Score = 30.0 bits (66), Expect = 4.7
Identities = 28/106 (26%), Positives = 51/106 (48%), Gaps = 10/106 (9%)
Query: 329 QYAAPGGLIGVGTKIDPTLCRADRMVGQVLGAVGA-----LPEIFTELEISYFLLRRLLG 383
Q+A+P + V I L DR G+ G + + PE+ +++ L+R LLG
Sbjct: 790 QFASPMKSV-VANFIVKDLLMNDRSTGEKNGKLWSPDEEVSPEVLAKVQAIKLLVRWLLG 848
Query: 384 VRTEGDKKAAKVQKLSKNEVLMVNIGSLSTGGRVSAVKADLGKIVL 429
++ K A +L ++V+ G L+ R+S K+D+ ++ L
Sbjct: 849 MKNNQSKSANSTLRLL--SAMLVSEGDLTEQKRIS--KSDMSRLRL 890
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.137 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,555,113
Number of Sequences: 37866
Number of extensions: 772953
Number of successful extensions: 1708
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1665
Number of HSP's gapped (non-prelim): 33
length of query: 472
length of database: 18,247,518
effective HSP length: 106
effective length of query: 366
effective length of database: 14,233,722
effective search space: 5209542252
effective search space used: 5209542252
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.