Search of human proteins with 4502669

Search of human proteins with 4502669

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4502669 CD3 antigen, delta subunit isoform A precursor [Homo
sapiens]
         (171 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4502669 CD3 antigen, delta subunit isoform A precursor [Homo ...   347   3e-96
gi|98985801 CD3 antigen, delta subunit isoform B precursor [Homo...   238   2e-63
gi|4557429 CD3G antigen, gamma polypeptide precursor [Homo sapiens]   127   5e-30
gi|38158005 TYRO protein tyrosine kinase binding protein isoform...    42   3e-04
gi|4507755 TYRO protein tyrosine kinase binding protein isoform ...    42   3e-04
gi|19923195 carcinoembryonic antigen-related cell adhesion molec...    33   0.12 
gi|4502671 CD3E antigen, epsilon polypeptide precursor [Homo sap...    32   0.35 
gi|68161541 carcinoembryonic antigen-related cell adhesion molec...    30   0.78 
gi|52485606 formin-like 2 [Homo sapiens]                               29   2.3  
gi|42476108 glycoprotein M6A isoform 2 [Homo sapiens]                  29   2.3  
gi|14149619 glycoprotein M6A isoform 1 [Homo sapiens]                  29   2.3  
gi|7019381 fibronectin leucine rich transmembrane protein 2 [Hom...    29   2.3  
gi|157951718 GSG1-like isoform 1 [Homo sapiens]                        29   2.3  
gi|118572606 hemicentin 1 [Homo sapiens]                               28   3.0  
gi|4758072 cryptochrome 1 (photolyase-like) [Homo sapiens]             28   3.0  
gi|42476105 glycoprotein M6A isoform 3 [Homo sapiens]                  28   3.0  
gi|39930575 shisa homolog 4 [Homo sapiens]                             28   5.0  

>gi|4502669 CD3 antigen, delta subunit isoform A precursor [Homo
           sapiens]
          Length = 171

 Score =  347 bits (890), Expect = 3e-96
 Identities = 171/171 (100%), Positives = 171/171 (100%)

Query: 1   MEHSTFLSGLVLATLLSQVSPFKIPIEELEDRVFVNCNTSITWVEGTVGTLLSDITRLDL 60
           MEHSTFLSGLVLATLLSQVSPFKIPIEELEDRVFVNCNTSITWVEGTVGTLLSDITRLDL
Sbjct: 1   MEHSTFLSGLVLATLLSQVSPFKIPIEELEDRVFVNCNTSITWVEGTVGTLLSDITRLDL 60

Query: 61  GKRILDPRGIYRCNGTDIYKDKESTVQVHYRMCQSCVELDPATVAGIIVTDVIATLLLAL 120
           GKRILDPRGIYRCNGTDIYKDKESTVQVHYRMCQSCVELDPATVAGIIVTDVIATLLLAL
Sbjct: 61  GKRILDPRGIYRCNGTDIYKDKESTVQVHYRMCQSCVELDPATVAGIIVTDVIATLLLAL 120

Query: 121 GVFCFAGHETGRLSGAADTQALLRNDQVYQPLRDRDDAQYSHLGGNWARNK 171
           GVFCFAGHETGRLSGAADTQALLRNDQVYQPLRDRDDAQYSHLGGNWARNK
Sbjct: 121 GVFCFAGHETGRLSGAADTQALLRNDQVYQPLRDRDDAQYSHLGGNWARNK 171


>gi|98985801 CD3 antigen, delta subunit isoform B precursor [Homo
           sapiens]
          Length = 127

 Score =  238 bits (606), Expect = 2e-63
 Identities = 126/171 (73%), Positives = 126/171 (73%), Gaps = 44/171 (25%)

Query: 1   MEHSTFLSGLVLATLLSQVSPFKIPIEELEDRVFVNCNTSITWVEGTVGTLLSDITRLDL 60
           MEHSTFLSGLVLATLLSQVSPFKIPIEELEDRVFVNCNTSITWVEGTVGTLLSDITRLDL
Sbjct: 1   MEHSTFLSGLVLATLLSQVSPFKIPIEELEDRVFVNCNTSITWVEGTVGTLLSDITRLDL 60

Query: 61  GKRILDPRGIYRCNGTDIYKDKESTVQVHYRMCQSCVELDPATVAGIIVTDVIATLLLAL 120
           GKRILDPRGIYRCNGTDIYKDKESTVQVHYR                             
Sbjct: 61  GKRILDPRGIYRCNGTDIYKDKESTVQVHYR----------------------------- 91

Query: 121 GVFCFAGHETGRLSGAADTQALLRNDQVYQPLRDRDDAQYSHLGGNWARNK 171
                           ADTQALLRNDQVYQPLRDRDDAQYSHLGGNWARNK
Sbjct: 92  ---------------TADTQALLRNDQVYQPLRDRDDAQYSHLGGNWARNK 127


>gi|4557429 CD3G antigen, gamma polypeptide precursor [Homo sapiens]
          Length = 182

 Score =  127 bits (319), Expect = 5e-30
 Identities = 71/183 (38%), Positives = 110/183 (60%), Gaps = 17/183 (9%)

Query: 1   MEHSTFLSGLVLATLLSQVSP---------FKIPIEELEDRVFVNCNT---SITWVEG-- 46
           ME    L+ L+LA +L Q +           K+   + +  V + C+    +ITW +   
Sbjct: 1   MEQGKGLAVLILAIILLQGTLAQSIKGNHLVKVYDYQEDGSVLLTCDAEAKNITWFKDGK 60

Query: 47  TVGTLLSDITRLDLGKRILDPRGIYRCNGTDIYKDKESTVQVHYRMCQSCVELDPATVAG 106
            +G L  D  + +LG    DPRG+Y+C G+   ++K   +QV+YRMCQ+C+EL+ AT++G
Sbjct: 61  MIGFLTEDKKKWNLGSNAKDPRGMYQCKGS---QNKSKPLQVYYRMCQNCIELNAATISG 117

Query: 107 IIVTDVIATLLLALGVFCFAGHETGRLSGAADTQALLRNDQVYQPLRDRDDAQYSHLGGN 166
            +  ++++  +LA+GV+  AG +  R S A+D Q LL NDQ+YQPL+DR+D QYSHL GN
Sbjct: 118 FLFAEIVSIFVLAVGVYFIAGQDGVRQSRASDKQTLLPNDQLYQPLKDREDDQYSHLQGN 177

Query: 167 WAR 169
             R
Sbjct: 178 QLR 180


>gi|38158005 TYRO protein tyrosine kinase binding protein isoform 2
           precursor [Homo sapiens]
          Length = 112

 Score = 42.0 bits (97), Expect = 3e-04
 Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 4/81 (4%)

Query: 86  VQVHYRMCQSCVELDPATVAGIIVTDVIATLLLALGVFCFAGHETGRLSGAADT---QAL 142
           VQ   +   SC  + P  +AGI++ D++ T+L+AL V+ F G    R  GAA+    Q +
Sbjct: 25  VQAQAQSDCSCSTVSPGVLAGIVMGDLVLTVLIALAVY-FLGRLVPRGRGAAEATRKQRI 83

Query: 143 LRNDQVYQPLRDRDDAQYSHL 163
              +  YQ L+ +    YS L
Sbjct: 84  TETESPYQELQGQRSDVYSDL 104


>gi|4507755 TYRO protein tyrosine kinase binding protein isoform 1
           precursor [Homo sapiens]
          Length = 113

 Score = 41.6 bits (96), Expect = 3e-04
 Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 5/82 (6%)

Query: 86  VQVHYRMCQSCVELDPATVAGIIVTDVIATLLLALGVFCFAGHETGRLSGAADT----QA 141
           VQ   +   SC  + P  +AGI++ D++ T+L+AL V+ F G    R  GAA+     Q 
Sbjct: 25  VQAQAQSDCSCSTVSPGVLAGIVMGDLVLTVLIALAVY-FLGRLVPRGRGAAEAATRKQR 83

Query: 142 LLRNDQVYQPLRDRDDAQYSHL 163
           +   +  YQ L+ +    YS L
Sbjct: 84  ITETESPYQELQGQRSDVYSDL 105


>gi|19923195 carcinoembryonic antigen-related cell adhesion molecule
           1 isoform 1 precursor [Homo sapiens]
          Length = 526

 Score = 33.1 bits (74), Expect = 0.12
 Identities = 34/137 (24%), Positives = 53/137 (38%), Gaps = 16/137 (11%)

Query: 18  QVSPFKIPIEELEDRVFVNCNT-----SITWVEGTVGTLLSDITRLDLGKRIL------- 65
           Q+   K  +   +D V + C+T     SI W         S+  +L  G   L       
Sbjct: 329 QIKASKTTVTGDKDSVNLTCSTNDTGISIRWFFKNQSLPSSERMKLSQGNTTLSINPVKR 388

Query: 66  DPRGIYRCNGTDIYKDKEST---VQVHYRMCQSCVELDPATVAGIIVTDVIATLLLALGV 122
           +  G Y C   +     +S    + V+Y        L P  +AGI++  V    L+A+ +
Sbjct: 389 EDAGTYWCEVFNPISKNQSDPIMLNVNYNALPQENGLSPGAIAGIVIGVVALVALIAVAL 448

Query: 123 FCFAGH-ETGRLSGAAD 138
            CF    +TGR S   D
Sbjct: 449 ACFLHFGKTGRASDQRD 465


>gi|4502671 CD3E antigen, epsilon polypeptide precursor [Homo
           sapiens]
          Length = 207

 Score = 31.6 bits (70), Expect = 0.35
 Identities = 14/44 (31%), Positives = 27/44 (61%)

Query: 80  KDKESTVQVHYRMCQSCVELDPATVAGIIVTDVIATLLLALGVF 123
           +D    + +  R+C++C+E+D  +VA I++ D+  T  L L V+
Sbjct: 106 EDANFYLYLRARVCENCMEMDVMSVATIVIVDICITGGLLLLVY 149


>gi|68161541 carcinoembryonic antigen-related cell adhesion molecule
           1 isoform 2 precursor [Homo sapiens]
          Length = 464

 Score = 30.4 bits (67), Expect = 0.78
 Identities = 29/123 (23%), Positives = 47/123 (38%), Gaps = 15/123 (12%)

Query: 18  QVSPFKIPIEELEDRVFVNCNT-----SITWVEGTVGTLLSDITRLDLGKRIL------- 65
           Q+   K  +   +D V + C+T     SI W         S+  +L  G   L       
Sbjct: 329 QIKASKTTVTGDKDSVNLTCSTNDTGISIRWFFKNQSLPSSERMKLSQGNTTLSINPVKR 388

Query: 66  DPRGIYRCNGTDIYKDKEST---VQVHYRMCQSCVELDPATVAGIIVTDVIATLLLALGV 122
           +  G Y C   +     +S    + V+Y        L P  +AGI++  V    L+A+ +
Sbjct: 389 EDAGTYWCEVFNPISKNQSDPIMLNVNYNALPQENGLSPGAIAGIVIGVVALVALIAVAL 448

Query: 123 FCF 125
            CF
Sbjct: 449 ACF 451


>gi|52485606 formin-like 2 [Homo sapiens]
          Length = 1092

 Score = 28.9 bits (63), Expect = 2.3
 Identities = 32/136 (23%), Positives = 56/136 (41%), Gaps = 23/136 (16%)

Query: 26  IEELEDRVFVNCNTSITWVEGTVGTLLSDITRLDL-----GKRILDPRGIYRCNGTDIY- 79
           +EELE+    N +     ++ T    +S I  L+       K +   R IY+   T ++ 
Sbjct: 395 VEELEE----NISHLSEKLQDTENEAMSKIVELEKQLMQRNKELDVVREIYKDANTQVHT 450

Query: 80  -----KDKESTVQ--------VHYRMCQSCVELDPATVAGIIVTDVIATLLLALGVFCFA 126
                K+KE  +Q        +H    Q  +++       I +  V+A+  L++G    A
Sbjct: 451 LRKMVKEKEEAIQRQSTLEKKIHELEKQGTIKIQKKGDGDIAILPVVASGTLSMGSEVVA 510

Query: 127 GHETGRLSGAADTQAL 142
           G+  G   GAA +  L
Sbjct: 511 GNSVGPTMGAASSGPL 526


>gi|42476108 glycoprotein M6A isoform 2 [Homo sapiens]
          Length = 278

 Score = 28.9 bits (63), Expect = 2.3
 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 4/47 (8%)

Query: 94  QSCVELDPATVAGIIVTDVIATLLLALGV--FCFAGHETGRLSGAAD 138
           + C E     + GI    +IAT+LL  GV  FC  GHE   LSG  +
Sbjct: 12  KGCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEA--LSGTVN 56


>gi|14149619 glycoprotein M6A isoform 1 [Homo sapiens]
          Length = 278

 Score = 28.9 bits (63), Expect = 2.3
 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 4/47 (8%)

Query: 94  QSCVELDPATVAGIIVTDVIATLLLALGV--FCFAGHETGRLSGAAD 138
           + C E     + GI    +IAT+LL  GV  FC  GHE   LSG  +
Sbjct: 12  KGCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEA--LSGTVN 56


>gi|7019381 fibronectin leucine rich transmembrane protein 2 [Homo
           sapiens]
          Length = 660

 Score = 28.9 bits (63), Expect = 2.3
 Identities = 14/32 (43%), Positives = 20/32 (62%)

Query: 101 PATVAGIIVTDVIATLLLALGVFCFAGHETGR 132
           P  +AG+I   VI  L++ L VFC+  H+ GR
Sbjct: 540 PFLLAGLIGGAVIFVLVVLLSVFCWHMHKKGR 571


>gi|157951718 GSG1-like isoform 1 [Homo sapiens]
          Length = 331

 Score = 28.9 bits (63), Expect = 2.3
 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 4/60 (6%)

Query: 66  DPRGIYRCNGTDIYKDKESTVQVHYRMCQSCVELDPATVAGI----IVTDVIATLLLALG 121
           D R ++R   T I+   E  +      C+S ++L PA+  G+    +V++V+  LLL +G
Sbjct: 93  DDRFLFRNFHTGIWYSCEEELSGLGEKCRSFIDLAPASEKGVLWLSVVSEVLYILLLVVG 152


>gi|118572606 hemicentin 1 [Homo sapiens]
          Length = 5635

 Score = 28.5 bits (62), Expect = 3.0
 Identities = 30/137 (21%), Positives = 54/137 (39%), Gaps = 14/137 (10%)

Query: 38   NTSITWVEGT--VGTLLSDITR------LDLGKRILDPRGIYRCNGTDIYKDKESTVQVH 89
            N SITW++    V T   ++        L + K +L+  G Y C  T+   + +  +Q+H
Sbjct: 1855 NPSITWLKDDQPVNTAQGNLKIQSSGRVLQIAKTLLEDAGRYTCVATNAAGETQQHIQLH 1914

Query: 90   YRMCQSCVELDPATVAGIIVTDVIATLLLALG--VFCFAGHETGRLSGAADTQALLRNDQ 147
                 S  +        ++V++ +     A G  V     ++  RL   + +   L   Q
Sbjct: 1915 VHEPPSLEDAGKMLNETVLVSNPVQLECKAAGNPVPVITWYKDNRLLSGSTSMTFLNRGQ 1974

Query: 148  VYQPLRDRDDAQYSHLG 164
            +     D + AQ S  G
Sbjct: 1975 II----DIESAQISDAG 1987


>gi|4758072 cryptochrome 1 (photolyase-like) [Homo sapiens]
          Length = 586

 Score = 28.5 bits (62), Expect = 3.0
 Identities = 10/29 (34%), Positives = 18/29 (62%)

Query: 14  TLLSQVSPFKIPIEELEDRVFVNCNTSIT 42
           TL+S++ P +IP+E +   V   C T ++
Sbjct: 155 TLISKMEPLEIPVETITSEVIEKCTTPLS 183


>gi|42476105 glycoprotein M6A isoform 3 [Homo sapiens]
          Length = 267

 Score = 28.5 bits (62), Expect = 3.0
 Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 4/45 (8%)

Query: 96  CVELDPATVAGIIVTDVIATLLLALGV--FCFAGHETGRLSGAAD 138
           C E     + GI    +IAT+LL  GV  FC  GHE   LSG  +
Sbjct: 3   CFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEA--LSGTVN 45


>gi|39930575 shisa homolog 4 [Homo sapiens]
          Length = 197

 Score = 27.7 bits (60), Expect = 5.0
 Identities = 12/47 (25%), Positives = 24/47 (51%)

Query: 79  YKDKESTVQVHYRMCQSCVELDPATVAGIIVTDVIATLLLALGVFCF 125
           Y  ++ T+ +  R  + C+   P T+AGI    ++   ++A  + CF
Sbjct: 61  YCCRDLTLLITERQQKHCLAFSPKTIAGIASAVILFVAVVATTICCF 107


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.138    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,176,047
Number of Sequences: 37866
Number of extensions: 245313
Number of successful extensions: 545
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 532
Number of HSP's gapped (non-prelim): 19
length of query: 171
length of database: 18,247,518
effective HSP length: 95
effective length of query: 76
effective length of database: 14,650,248
effective search space: 1113418848
effective search space used: 1113418848
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.