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Search of human proteins with 4502623
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4502623 cyclin H [Homo sapiens]
(323 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4502623 cyclin H [Homo sapiens] 650 0.0
gi|61676091 cyclin C isoform a [Homo sapiens] 67 2e-11
gi|16950655 cyclin D1 [Homo sapiens] 49 6e-06
gi|61676093 cyclin C isoform b [Homo sapiens] 46 4e-05
gi|157502165 family with sequence similarity 58 member B [Homo s... 45 9e-05
gi|150417989 cyclin K isoform 1 [Homo sapiens] 44 1e-04
gi|38176158 cyclin K isoform 2 [Homo sapiens] 44 1e-04
gi|4502617 cyclin D2 [Homo sapiens] 44 2e-04
gi|196049382 family with sequence similarity 58, member A isofor... 44 2e-04
gi|196049384 family with sequence similarity 58, member A isofor... 44 2e-04
gi|9945320 cyclin L1 [Homo sapiens] 44 3e-04
gi|17978469 cyclin T2 isoform b [Homo sapiens] 43 3e-04
gi|4502629 cyclin T2 isoform a [Homo sapiens] 43 3e-04
gi|88758580 cyclin L2 isoform A [Homo sapiens] 40 0.004
gi|197276674 cyclin J isoform 1 [Homo sapiens] 38 0.014
gi|17978466 cyclin T1 [Homo sapiens] 35 0.069
gi|239756957 PREDICTED: dynein, axonemal, heavy chain 17 [Homo s... 33 0.26
gi|239751459 PREDICTED: dynein, axonemal, heavy chain 17 [Homo s... 33 0.26
gi|239745966 PREDICTED: dynein, axonemal, heavy chain 17 [Homo s... 33 0.26
gi|157364937 OTU domain containing 6B [Homo sapiens] 33 0.26
gi|12667788 myosin, heavy polypeptide 9, non-muscle [Homo sapiens] 31 1.3
gi|24430183 outer dense fiber of sperm tails 2 isoform 2 [Homo s... 31 1.3
gi|24430181 outer dense fiber of sperm tails 2 isoform 1 [Homo s... 31 1.3
gi|111038128 neuroguidin isoform 1 [Homo sapiens] 31 1.3
gi|111038133 neuroguidin isoform 2 [Homo sapiens] 31 1.3
gi|221554518 cyclin L2 isoform D [Homo sapiens] 30 2.9
gi|221554516 cyclin L2 isoform C [Homo sapiens] 30 2.9
gi|88758578 cyclin L2 isoform B [Homo sapiens] 30 2.9
gi|239745099 PREDICTED: similar to Golgin subfamily A member 8-l... 30 2.9
gi|4758646 kinesin family member 3B [Homo sapiens] 30 3.8
>gi|4502623 cyclin H [Homo sapiens]
Length = 323
Score = 650 bits (1676), Expect = 0.0
Identities = 323/323 (100%), Positives = 323/323 (100%)
Query: 1 MYHNSSQKRHWTFSSEEQLARLRADANRKFRCKAVANGKVLPNDPVFLEPHEEMTLCKYY 60
MYHNSSQKRHWTFSSEEQLARLRADANRKFRCKAVANGKVLPNDPVFLEPHEEMTLCKYY
Sbjct: 1 MYHNSSQKRHWTFSSEEQLARLRADANRKFRCKAVANGKVLPNDPVFLEPHEEMTLCKYY 60
Query: 61 EKRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNV 120
EKRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNV
Sbjct: 61 EKRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNV 120
Query: 121 SSPQFVGNLRESPLGQEKALEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLKTRYPI 180
SSPQFVGNLRESPLGQEKALEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLKTRYPI
Sbjct: 121 SSPQFVGNLRESPLGQEKALEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLKTRYPI 180
Query: 181 LENPEILRKTADDFLNRIALTDAYLLYTPSQIALTAILSSASRAGITMESYLSESLMLKE 240
LENPEILRKTADDFLNRIALTDAYLLYTPSQIALTAILSSASRAGITMESYLSESLMLKE
Sbjct: 181 LENPEILRKTADDFLNRIALTDAYLLYTPSQIALTAILSSASRAGITMESYLSESLMLKE 240
Query: 241 NRTCLSQLLDIMKSMRNLVKKYEPPRSEEVAVLKQKLERCHSAELALNVITKKRKGYEDD 300
NRTCLSQLLDIMKSMRNLVKKYEPPRSEEVAVLKQKLERCHSAELALNVITKKRKGYEDD
Sbjct: 241 NRTCLSQLLDIMKSMRNLVKKYEPPRSEEVAVLKQKLERCHSAELALNVITKKRKGYEDD 300
Query: 301 DYVSKKSKHEEEEWTDDDLVESL 323
DYVSKKSKHEEEEWTDDDLVESL
Sbjct: 301 DYVSKKSKHEEEEWTDDDLVESL 323
>gi|61676091 cyclin C isoform a [Homo sapiens]
Length = 283
Score = 67.4 bits (163), Expect = 2e-11
Identities = 49/151 (32%), Positives = 72/151 (47%), Gaps = 17/151 (11%)
Query: 77 RSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSPQFVGNLRESPLGQ 136
+ V+ TA +YFKRFY S+ P ++ TC FLA KV+EF V S + S L
Sbjct: 59 QQVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATSVLKT 118
Query: 137 EKA----------LEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLKTRYPILENPEI 186
+ + ILE E L++ ++ LIV++PYRP ++ D + ++
Sbjct: 119 RFSYAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQD-------MGQEDM 171
Query: 187 LRKTADDFLNRIALTDAYLLYTPSQIALTAI 217
L A +N TD LLY P IAL +
Sbjct: 172 LLPLAWRIVNDTYRTDLCLLYPPFMIALACL 202
>gi|16950655 cyclin D1 [Homo sapiens]
Length = 295
Score = 48.9 bits (115), Expect = 6e-06
Identities = 63/274 (22%), Positives = 115/274 (41%), Gaps = 32/274 (11%)
Query: 17 EQLARLRADAN----RKFRCKAVANGKVLPNDPVFLEPHEEM--TLCKYYEKRLLEFCSV 70
E + R DAN R R A P+ F +E+ ++ K +LE C
Sbjct: 11 ETIRRAYPDANLLNDRVLRAMLKAEETCAPSVSYFKCVQKEVLPSMRKIVATWMLEVCEE 70
Query: 71 FKPAMPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSPQFVGNLR 130
K V A Y RF V + +++ TC F+A K+ E + + +
Sbjct: 71 QK--CEEEVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKETIPLTAEKLCIYT 128
Query: 131 ESPLGQEKALEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLKTRYPILENPEILRKT 190
++ + E ++L+ ELLL+ +L ++L P+ E FL + EN +I+RK
Sbjct: 129 DNSIRPE----ELLQMELLLVNKLKWNLAAMTPHDFIEHFLSKMPEAE---ENKQIIRKH 181
Query: 191 ADDFLNRIALTDAYLLYTPSQIALTAILSSASRAGITMES------------YLSESLML 238
A F+ A ++ PS +A +++++ G+ + S +LS +
Sbjct: 182 AQTFVALCATDVKFISNPPSMVAAGSVVAAVQ--GLNLRSPNNFLSYYRLTRFLSRVIKC 239
Query: 239 KEN--RTCLSQLLDIMK-SMRNLVKKYEPPRSEE 269
+ R C Q+ +++ S+R + +P +EE
Sbjct: 240 DPDCLRACQEQIEALLESSLRQAQQNMDPKAAEE 273
>gi|61676093 cyclin C isoform b [Homo sapiens]
Length = 198
Score = 46.2 bits (108), Expect = 4e-05
Identities = 38/121 (31%), Positives = 55/121 (45%), Gaps = 17/121 (14%)
Query: 107 TCAFLACKVDEFNVSSPQFVGNLRESPLGQEKA----------LEQILEYELLLIQQLNF 156
TC FLA KV+EF V S + S L + + ILE E L++ ++
Sbjct: 4 TCVFLASKVEEFGVVSNTRLIAAATSVLKTRFSYAFPKEFPYRMNHILECEFYLLELMDC 63
Query: 157 HLIVHNPYRPFEGFLIDLKTRYPILENPEILRKTADDFLNRIALTDAYLLYTPSQIALTA 216
LIV++PYRP ++ D + ++L A +N TD LLY P IAL
Sbjct: 64 CLIVYHPYRPLLQYVQD-------MGQEDMLLPLAWRIVNDTYRTDLCLLYPPFMIALAC 116
Query: 217 I 217
+
Sbjct: 117 L 117
>gi|157502165 family with sequence similarity 58 member B [Homo
sapiens]
Length = 252
Score = 45.1 bits (105), Expect = 9e-05
Identities = 31/116 (26%), Positives = 57/116 (49%), Gaps = 14/116 (12%)
Query: 72 KPAMPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDE--------FNVSSP 123
K M + TAC + +F+ + + P +I ++ +LA KV+E +VS+
Sbjct: 44 KLGMQSIPIATACTIYPKFFCETILDAFDPYLIAMSSIYLAGKVEEQPLWAHDIISVSNR 103
Query: 124 QFVGNLRESPLGQEKAL----EQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLK 175
F N PLG + L + I++ ELL+++ L F + +P++ +L+ LK
Sbjct: 104 YF--NPSSEPLGLDSRLWELRDSIVQRELLMLRVLRFQVSFQHPHKYLLYYLVSLK 157
>gi|150417989 cyclin K isoform 1 [Homo sapiens]
Length = 580
Score = 44.3 bits (103), Expect = 1e-04
Identities = 38/163 (23%), Positives = 71/163 (43%), Gaps = 9/163 (5%)
Query: 80 VGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSPQFVGN----LRESPLG 135
+ T +YF RFY+ +S ++ + C FLA KV+E + L + G
Sbjct: 71 LATGIIYFHRFYMFHSFKQFPRYVTGACCLFLAGKVEETPKKCKDIIKTARSLLNDVQFG 130
Query: 136 Q--EKALEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLKTRYPILENPEILRKTADD 193
Q + E+++ E +L+Q + F L V +PY+ + LK ++ L + A
Sbjct: 131 QFGDDPKEEVMVLERILLQTIKFDLQVEHPYQFLLKYAKQLKGDKNKIQK---LVQMAWT 187
Query: 194 FLNRIALTDAYLLYTPSQIALTAILSSASRAGITMESYLSESL 236
F+N T L + P IA+ + + ++ + S+ +
Sbjct: 188 FVNDSLCTTLSLQWEPEIIAVAVMYLAGRLCKFEIQEWTSKPM 230
>gi|38176158 cyclin K isoform 2 [Homo sapiens]
Length = 354
Score = 44.3 bits (103), Expect = 1e-04
Identities = 38/163 (23%), Positives = 71/163 (43%), Gaps = 9/163 (5%)
Query: 80 VGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSPQFVGN----LRESPLG 135
+ T +YF RFY+ +S ++ + C FLA KV+E + L + G
Sbjct: 71 LATGIIYFHRFYMFHSFKQFPRYVTGACCLFLAGKVEETPKKCKDIIKTARSLLNDVQFG 130
Query: 136 Q--EKALEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLKTRYPILENPEILRKTADD 193
Q + E+++ E +L+Q + F L V +PY+ + LK ++ L + A
Sbjct: 131 QFGDDPKEEVMVLERILLQTIKFDLQVEHPYQFLLKYAKQLKGDKNKIQK---LVQMAWT 187
Query: 194 FLNRIALTDAYLLYTPSQIALTAILSSASRAGITMESYLSESL 236
F+N T L + P IA+ + + ++ + S+ +
Sbjct: 188 FVNDSLCTTLSLQWEPEIIAVAVMYLAGRLCKFEIQEWTSKPM 230
>gi|4502617 cyclin D2 [Homo sapiens]
Length = 289
Score = 43.9 bits (102), Expect = 2e-04
Identities = 45/179 (25%), Positives = 74/179 (41%), Gaps = 29/179 (16%)
Query: 64 LLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSP 123
+LE C K V A Y RF + H +++ C FLA K+ E
Sbjct: 63 MLEVCEEQK--CEEEVFPLAMNYLDRFLAGVPTPKSHLQLLGAVCMFLASKLKE------ 114
Query: 124 QFVGNLRESPLGQEKAL---------EQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDL 174
SPL EK +++LE+EL+++ +L ++L P+ E L L
Sbjct: 115 -------TSPLTAEKLCIYTDNSIKPQELLEWELVVLGKLKWNLAAVTPHDFIEHILRKL 167
Query: 175 KTRYPILENPEILRKTADDFLNRIALTDAYLLYTPSQIALTAILSSASRAGITMESYLS 233
+ E ++RK A F+ A + +Y PS IA ++ A+ G+ + +S
Sbjct: 168 PQQR---EKLSLIRKHAQTFIALCATDFKFAMYPPSMIATGSV--GAAICGLQQDEEVS 221
>gi|196049382 family with sequence similarity 58, member A isoform 1
[Homo sapiens]
Length = 248
Score = 43.9 bits (102), Expect = 2e-04
Identities = 26/106 (24%), Positives = 55/106 (51%), Gaps = 10/106 (9%)
Query: 80 VGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSPQF--VGNLRESPLGQE 137
+ TAC + +F+ ++ Y P +I ++ +LA KV+E ++ + V N +P G+
Sbjct: 48 IATACTIYHKFFCETNLDAYDPYLIAMSSIYLAGKVEEQHLRTRDIINVSNRYFNPSGEP 107
Query: 138 KAL--------EQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLK 175
L + I++ ELL+++ L F + +P++ +L+ L+
Sbjct: 108 LELDSRFWELRDSIVQCELLMLRVLRFQVSFQHPHKYLLHYLVSLQ 153
>gi|196049384 family with sequence similarity 58, member A isoform 2
[Homo sapiens]
Length = 228
Score = 43.9 bits (102), Expect = 2e-04
Identities = 26/106 (24%), Positives = 55/106 (51%), Gaps = 10/106 (9%)
Query: 80 VGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSPQF--VGNLRESPLGQE 137
+ TAC + +F+ ++ Y P +I ++ +LA KV+E ++ + V N +P G+
Sbjct: 48 IATACTIYHKFFCETNLDAYDPYLIAMSSIYLAGKVEEQHLRTRDIINVSNRYFNPSGEP 107
Query: 138 KAL--------EQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLK 175
L + I++ ELL+++ L F + +P++ +L+ L+
Sbjct: 108 LELDSRFWELRDSIVQCELLMLRVLRFQVSFQHPHKYLLHYLVSLQ 153
>gi|9945320 cyclin L1 [Homo sapiens]
Length = 526
Score = 43.5 bits (101), Expect = 3e-04
Identities = 38/161 (23%), Positives = 76/161 (47%), Gaps = 19/161 (11%)
Query: 75 MPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDE--------FNV--SSPQ 124
+P+ + T + F RF+ + S +++ I+ + C LA K++E NV Q
Sbjct: 99 LPQVAMATGQVLFHRFFYSKSFVKHSFEIVAMACINLASKIEEAPRRIRDVINVFHHLRQ 158
Query: 125 FVGNLRESPLGQEK----ALEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLKTRYPI 180
G SPL ++ Q+++ E ++++L F + V +P++ +L L+
Sbjct: 159 LRGKRTPSPLILDQNYINTKNQVIKAERRVLKELGFCVHVKHPHKIIVMYLQVLE----- 213
Query: 181 LENPEILRKTADDFLNRIALTDAYLLYTPSQIALTAILSSA 221
E + L +TA +++N T+ ++ + P IA I +A
Sbjct: 214 CERNQTLVQTAWNYMNDSLRTNVFVRFQPETIACACIYLAA 254
>gi|17978469 cyclin T2 isoform b [Homo sapiens]
Length = 730
Score = 43.1 bits (100), Expect = 3e-04
Identities = 46/213 (21%), Positives = 89/213 (41%), Gaps = 28/213 (13%)
Query: 80 VGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSPQFVGNLRES------P 133
+ TA +Y RFY+++S +++ II T FLA KV+E + V + + P
Sbjct: 58 INTAIVYMHRFYMHHSFTKFNKNIISSTALFLAAKVEE-QARKLEHVIKVAHACLHPLEP 116
Query: 134 LGQEKA------LEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLKTRYPILENPEIL 187
L K ++++ E +++Q L F + + +P+ +K + + ++
Sbjct: 117 LLDTKCDAYLQQTQELVILETIMLQTLGFEITIEHPHTDV------VKCTQLVRASKDLA 170
Query: 188 RKTADDFLNRIALTDAYLLYTPSQIALTAILSS---------ASRAGITMESYLSESLML 238
+ + N + LT L Y P+ IA I + S G Y+ ++ L
Sbjct: 171 QTSYFMATNSLHLTTFCLQYKPTVIACVCIHLACKWSNWEIPVSTDGKHWWEYVDPTVTL 230
Query: 239 KENRTCLSQLLDIMKSMRNLVKKYEPPRSEEVA 271
+ + L I++ N +KK R+ + A
Sbjct: 231 ELLDELTHEFLQILEKTPNRLKKIRNWRANQAA 263
>gi|4502629 cyclin T2 isoform a [Homo sapiens]
Length = 663
Score = 43.1 bits (100), Expect = 3e-04
Identities = 46/213 (21%), Positives = 89/213 (41%), Gaps = 28/213 (13%)
Query: 80 VGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSPQFVGNLRES------P 133
+ TA +Y RFY+++S +++ II T FLA KV+E + V + + P
Sbjct: 58 INTAIVYMHRFYMHHSFTKFNKNIISSTALFLAAKVEE-QARKLEHVIKVAHACLHPLEP 116
Query: 134 LGQEKA------LEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLKTRYPILENPEIL 187
L K ++++ E +++Q L F + + +P+ +K + + ++
Sbjct: 117 LLDTKCDAYLQQTQELVILETIMLQTLGFEITIEHPHTDV------VKCTQLVRASKDLA 170
Query: 188 RKTADDFLNRIALTDAYLLYTPSQIALTAILSS---------ASRAGITMESYLSESLML 238
+ + N + LT L Y P+ IA I + S G Y+ ++ L
Sbjct: 171 QTSYFMATNSLHLTTFCLQYKPTVIACVCIHLACKWSNWEIPVSTDGKHWWEYVDPTVTL 230
Query: 239 KENRTCLSQLLDIMKSMRNLVKKYEPPRSEEVA 271
+ + L I++ N +KK R+ + A
Sbjct: 231 ELLDELTHEFLQILEKTPNRLKKIRNWRANQAA 263
>gi|88758580 cyclin L2 isoform A [Homo sapiens]
Length = 520
Score = 39.7 bits (91), Expect = 0.004
Identities = 36/161 (22%), Positives = 74/161 (45%), Gaps = 19/161 (11%)
Query: 75 MPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDE--------FNV--SSPQ 124
+P+ + T + F+RF+ S +++ + + C LA K++E NV Q
Sbjct: 94 LPQVAMATGQVLFQRFFYTKSFVKHSMEHVSMACVHLASKIEEAPRRIRDVINVFHRLRQ 153
Query: 125 FVGNLRESPLGQEK----ALEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLKTRYPI 180
+ PL ++ QI++ E ++++L F + V +P++ +L L+
Sbjct: 154 LRDKKKPVPLLLDQDYVNLKNQIIKAERRVLKELGFCVHVKHPHKIIVMYLQVLE----- 208
Query: 181 LENPEILRKTADDFLNRIALTDAYLLYTPSQIALTAILSSA 221
E + L +T+ +++N TD ++ + P IA I +A
Sbjct: 209 CERNQHLVQTSWNYMNDSLRTDVFVRFQPESIACACIYLAA 249
>gi|197276674 cyclin J isoform 1 [Homo sapiens]
Length = 383
Score = 37.7 bits (86), Expect = 0.014
Identities = 37/140 (26%), Positives = 64/140 (45%), Gaps = 18/140 (12%)
Query: 95 SVMEYHPRIIMLTCAFLACKVDEFNVSSPQF-----VGNLRESPLGQEKALEQILEYELL 149
S+ + H ++ L+C LA K +E S P+ +G + L K + +L ELL
Sbjct: 78 SIQQLH--LVALSCLLLASKFEEKEDSVPKLEQLNSLGCMTNMNLVLTK--QNLLHMELL 133
Query: 150 LIQQLNFHLIVHNPYRPFEGFL------IDLKTRYPI--LENPEILRKTADDFLNRIALT 201
L++ ++L + E +L DL +P+ LE ++ D+ ++L
Sbjct: 134 LLETFQWNLCLPTAAHFIEYYLSEAVHETDLHDGWPMICLEKTKLYMAKYADYFLEVSLQ 193
Query: 202 D-AYLLYTPSQIALTAILSS 220
D A+L Y PS +A + SS
Sbjct: 194 DYAFLNYAPSLVAAACVASS 213
>gi|17978466 cyclin T1 [Homo sapiens]
Length = 726
Score = 35.4 bits (80), Expect = 0.069
Identities = 32/150 (21%), Positives = 63/150 (42%), Gaps = 19/150 (12%)
Query: 80 VGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSPQFVGNLRESPLGQEKA 139
+ TA +Y RFY+ S ++ + FLA KV+E + V + + L +++
Sbjct: 59 INTAIVYMHRFYMIQSFTQFPGNSVAPAALFLAAKVEE-QPKKLEHVIKVAHTCLHPQES 117
Query: 140 L------------EQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLKTRYPILENPEIL 187
L + ++ E +++Q L F L + +P+ +K + + ++
Sbjct: 118 LPDTRSEAYLQQVQDLVILESIILQTLGFELTIDHPHTHV------VKCTQLVRASKDLA 171
Query: 188 RKTADDFLNRIALTDAYLLYTPSQIALTAI 217
+ + N + LT L YTP +A I
Sbjct: 172 QTSYFMATNSLHLTTFSLQYTPPVVACVCI 201
>gi|239756957 PREDICTED: dynein, axonemal, heavy chain 17 [Homo
sapiens]
Length = 4470
Score = 33.5 bits (75), Expect = 0.26
Identities = 43/211 (20%), Positives = 90/211 (42%), Gaps = 20/211 (9%)
Query: 87 FKRF-YL-NNSVMEYHPRIIMLTCAFLACKVDEFN----VSSPQFVGNLRESPLGQEKAL 140
F+R+ YL +++ E+ ++ CA A +D + +P + +E EK
Sbjct: 996 FERYSYLWTDNLQEFMKNFLIYGCAVTAEDLDTWTDDTIPKTPPTLAQFQEQIDSYEKLY 1055
Query: 141 EQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLKTRYPILENPEILRKTADDFLNRIAL 200
E++ + E + FH + RPF+ L+ R+ + R ++ N +A
Sbjct: 1056 EEVSKCENTKV----FHGWLQCDCRPFKQALLSTIRRWGFM----FKRHLSNHVTNSLAD 1107
Query: 201 TDAYLLYTPSQIALTAILSSASRAGITMESYLSESLMLKENRTCLSQLLDIMKSMRNLVK 260
+A++ +++ LT L G+ + + +KE + + + +K L+K
Sbjct: 1108 LEAFMKV--ARMGLTKPLKEGDYDGLV--EVMGHLMKVKERQAATDNMFEPLKQTIELLK 1163
Query: 261 KYEPPRSEEVAVLKQKLER--CHSAELALNV 289
Y EE+ + Q+L ++ +LA+ V
Sbjct: 1164 TYGEEMPEEIHLKLQELPEHWANTKKLAIQV 1194
>gi|239751459 PREDICTED: dynein, axonemal, heavy chain 17 [Homo
sapiens]
Length = 4485
Score = 33.5 bits (75), Expect = 0.26
Identities = 43/211 (20%), Positives = 90/211 (42%), Gaps = 20/211 (9%)
Query: 87 FKRF-YL-NNSVMEYHPRIIMLTCAFLACKVDEFN----VSSPQFVGNLRESPLGQEKAL 140
F+R+ YL +++ E+ ++ CA A +D + +P + +E EK
Sbjct: 987 FERYSYLWTDNLQEFMKNFLIYGCAVTAEDLDTWTDDTIPKTPPTLAQFQEQIDSYEKLY 1046
Query: 141 EQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLKTRYPILENPEILRKTADDFLNRIAL 200
E++ + E + FH + RPF+ L+ R+ + R ++ N +A
Sbjct: 1047 EEVSKCENTKV----FHGWLQCDCRPFKQALLSTIRRWGFM----FKRHLSNHVTNSLAD 1098
Query: 201 TDAYLLYTPSQIALTAILSSASRAGITMESYLSESLMLKENRTCLSQLLDIMKSMRNLVK 260
+A++ +++ LT L G+ + + +KE + + + +K L+K
Sbjct: 1099 LEAFMKV--ARMGLTKPLKEGDYDGLV--EVMGHLMKVKERQAATDNMFEPLKQTIELLK 1154
Query: 261 KYEPPRSEEVAVLKQKLER--CHSAELALNV 289
Y EE+ + Q+L ++ +LA+ V
Sbjct: 1155 TYGEEMPEEIHLKLQELPEHWANTKKLAIQV 1185
>gi|239745966 PREDICTED: dynein, axonemal, heavy chain 17 [Homo
sapiens]
Length = 4485
Score = 33.5 bits (75), Expect = 0.26
Identities = 43/211 (20%), Positives = 90/211 (42%), Gaps = 20/211 (9%)
Query: 87 FKRF-YL-NNSVMEYHPRIIMLTCAFLACKVDEFN----VSSPQFVGNLRESPLGQEKAL 140
F+R+ YL +++ E+ ++ CA A +D + +P + +E EK
Sbjct: 987 FERYSYLWTDNLQEFMKNFLIYGCAVTAEDLDTWTDDTIPKTPPTLAQFQEQIDSYEKLY 1046
Query: 141 EQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLKTRYPILENPEILRKTADDFLNRIAL 200
E++ + E + FH + RPF+ L+ R+ + R ++ N +A
Sbjct: 1047 EEVSKCENTKV----FHGWLQCDCRPFKQALLSTIRRWGFM----FKRHLSNHVTNSLAD 1098
Query: 201 TDAYLLYTPSQIALTAILSSASRAGITMESYLSESLMLKENRTCLSQLLDIMKSMRNLVK 260
+A++ +++ LT L G+ + + +KE + + + +K L+K
Sbjct: 1099 LEAFMKV--ARMGLTKPLKEGDYDGLV--EVMGHLMKVKERQAATDNMFEPLKQTIELLK 1154
Query: 261 KYEPPRSEEVAVLKQKLER--CHSAELALNV 289
Y EE+ + Q+L ++ +LA+ V
Sbjct: 1155 TYGEEMPEEIHLKLQELPEHWANTKKLAIQV 1185
>gi|157364937 OTU domain containing 6B [Homo sapiens]
Length = 323
Score = 33.5 bits (75), Expect = 0.26
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 226 ITMESYLSESL-----MLKENRTCLSQLLDIMKSMRNLVKKYEPPR----SEEVAVLKQK 276
+ ME+ L+E L +L+ +R +L ++ M+N V K + R +E+VA L+++
Sbjct: 29 VVMEAVLTEELDEEEQLLRRHRKEKKELQAKIQGMKNAVPKNDKKRRKQLTEDVAKLEKE 88
Query: 277 LERCHSAEL-ALNVITKKRK 295
+E+ H EL L + TK+ K
Sbjct: 89 MEQKHREELEQLKLTTKENK 108
>gi|12667788 myosin, heavy polypeptide 9, non-muscle [Homo sapiens]
Length = 1960
Score = 31.2 bits (69), Expect = 1.3
Identities = 35/153 (22%), Positives = 66/153 (43%), Gaps = 10/153 (6%)
Query: 175 KTRYPILENPEILRKTADDFLNRIALTDAYLLYTPSQIALTAILSSASRAGITMESYLSE 234
K R + + L + D ++IA A + Q+A A+ A + E+ +
Sbjct: 1041 KQRQELEKTRRKLEGDSTDLSDQIAELQAQIAELKMQLAKKEEELQAALARVEEEA-AQK 1099
Query: 235 SLMLKENRTCLSQLLDIMKSM------RNLVKKYEPPRSEEVAVLKQKLERCHSAELALN 288
++ LK+ R SQ+ ++ + + RN +K + EE+ LK +LE + A
Sbjct: 1100 NMALKKIRELESQISELQEDLESERASRNKAEKQKRDLGEELEALKTELEDTLDSTAAQQ 1159
Query: 289 VITKKRKGYEDDDYVSKKSKHEEEEWTDDDLVE 321
+ KR E + + KK+ EE + + + E
Sbjct: 1160 ELRSKR---EQEVNILKKTLEEEAKTHEAQIQE 1189
>gi|24430183 outer dense fiber of sperm tails 2 isoform 2 [Homo
sapiens]
Length = 638
Score = 31.2 bits (69), Expect = 1.3
Identities = 19/79 (24%), Positives = 34/79 (43%)
Query: 244 CLSQLLDIMKSMRNLVKKYEPPRSEEVAVLKQKLERCHSAELALNVITKKRKGYEDDDYV 303
CL + + K R + K++ R EE+ + +L L ++ K +D +
Sbjct: 117 CLKSEVKMQKGERQMAKRFLEERKEELEEVAHELAETEHENTVLRHNIERMKEEKDFTIL 176
Query: 304 SKKSKHEEEEWTDDDLVES 322
KK +E+E LVE+
Sbjct: 177 QKKHLQQEKECLMSKLVEA 195
>gi|24430181 outer dense fiber of sperm tails 2 isoform 1 [Homo
sapiens]
Length = 805
Score = 31.2 bits (69), Expect = 1.3
Identities = 19/79 (24%), Positives = 34/79 (43%)
Query: 244 CLSQLLDIMKSMRNLVKKYEPPRSEEVAVLKQKLERCHSAELALNVITKKRKGYEDDDYV 303
CL + + K R + K++ R EE+ + +L L ++ K +D +
Sbjct: 112 CLKSEVKMQKGERQMAKRFLEERKEELEEVAHELAETEHENTVLRHNIERMKEEKDFTIL 171
Query: 304 SKKSKHEEEEWTDDDLVES 322
KK +E+E LVE+
Sbjct: 172 QKKHLQQEKECLMSKLVEA 190
>gi|111038128 neuroguidin isoform 1 [Homo sapiens]
Length = 315
Score = 31.2 bits (69), Expect = 1.3
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 7/64 (10%)
Query: 253 KSMRNLVKKYEPPR-------SEEVAVLKQKLERCHSAELALNVITKKRKGYEDDDYVSK 305
KS++ + KKY PPR E K++LER L+ +VI + ++ Y D +
Sbjct: 162 KSVKGVSKKYVPPRLVPVHYDETEAEREKKRLERAKRRALSSSVIRELKEQYSDAPEEIR 221
Query: 306 KSKH 309
++H
Sbjct: 222 DARH 225
>gi|111038133 neuroguidin isoform 2 [Homo sapiens]
Length = 311
Score = 31.2 bits (69), Expect = 1.3
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 7/64 (10%)
Query: 253 KSMRNLVKKYEPPR-------SEEVAVLKQKLERCHSAELALNVITKKRKGYEDDDYVSK 305
KS++ + KKY PPR E K++LER L+ +VI + ++ Y D +
Sbjct: 162 KSVKGVSKKYVPPRLVPVHYDETEAEREKKRLERAKRRALSSSVIRELKEQYSDAPEEIR 221
Query: 306 KSKH 309
++H
Sbjct: 222 DARH 225
>gi|221554518 cyclin L2 isoform D [Homo sapiens]
Length = 227
Score = 30.0 bits (66), Expect = 2.9
Identities = 11/43 (25%), Positives = 24/43 (55%)
Query: 75 MPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDE 117
+P+ + T + F+RF+ S +++ + + C LA K++E
Sbjct: 94 LPQVAMATGQVLFQRFFYTKSFVKHSMEHVSMACVHLASKIEE 136
>gi|221554516 cyclin L2 isoform C [Homo sapiens]
Length = 236
Score = 30.0 bits (66), Expect = 2.9
Identities = 11/43 (25%), Positives = 24/43 (55%)
Query: 75 MPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDE 117
+P+ + T + F+RF+ S +++ + + C LA K++E
Sbjct: 94 LPQVAMATGQVLFQRFFYTKSFVKHSMEHVSMACVHLASKIEE 136
>gi|88758578 cyclin L2 isoform B [Homo sapiens]
Length = 226
Score = 30.0 bits (66), Expect = 2.9
Identities = 11/43 (25%), Positives = 24/43 (55%)
Query: 75 MPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDE 117
+P+ + T + F+RF+ S +++ + + C LA K++E
Sbjct: 94 LPQVAMATGQVLFQRFFYTKSFVKHSMEHVSMACVHLASKIEE 136
>gi|239745099 PREDICTED: similar to Golgin subfamily A member 8-like
protein 1 isoform 1 [Homo sapiens]
Length = 632
Score = 30.0 bits (66), Expect = 2.9
Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 228 MESYLSESLMLKENRTC-LSQLLDIMKSMRNLVKKYEPPRSEEVAVLKQKLERCHSAELA 286
+ES E ++ ++R+ +SQL + +KS++ K+ E EE +K + E+
Sbjct: 75 LESPCQERAVVLDSRSVEISQLKNTIKSLKQQKKQVEHQLEEEKKANNKKQKAKRVLEVQ 134
Query: 287 LNVITKKRKGYEDDDYVSKKSKHEEEEWTDD 317
L + +++ D Y K+S EE + D
Sbjct: 135 LQTLNIQKEELNTDLYHMKRSLRYFEEKSKD 165
>gi|4758646 kinesin family member 3B [Homo sapiens]
Length = 747
Score = 29.6 bits (65), Expect = 3.8
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 228 MESYLSESLMLKENRTCLSQLLDI-MKSMRNLVKKYEPPRSEEVAVLKQKLERCHSAELA 286
MES E+L LKE + L Q +DI K ++ L K + ++E + ++ ++ E
Sbjct: 513 MESRDEETLELKETYSSLQQEVDIKTKKLKKLFSKLQAVKAEIHDLQEEHIKERQELEQT 572
Query: 287 LNVITKKRK 295
N +T++ K
Sbjct: 573 QNELTRELK 581
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.134 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,768,712
Number of Sequences: 37866
Number of extensions: 494677
Number of successful extensions: 1840
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 1786
Number of HSP's gapped (non-prelim): 69
length of query: 323
length of database: 18,247,518
effective HSP length: 102
effective length of query: 221
effective length of database: 14,385,186
effective search space: 3179126106
effective search space used: 3179126106
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.