Guide to the Human Genome
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Name: AGRP Sequence: fasta or formatted (132aa) NCBI GI: 4501995
Description:

agouti related protein homolog isoform 1

Referenced in:

Peptide and Protein G-coupled Signals

Other entries for this name:
alt mRNA [132aa] agouti related protein homolog isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.9         17           2
 C cysteine            8.3         11           2
 D aspartate           3.8          5           1
 E glutamate           6.8          9           2
 F phenylalanine       2.3          3           2
 G glycine             5.3          7           1
 H histidine           0.8          1           1
 I isoleucine          0.8          1           1
 K lysine              2.3          3           2
 L leucine            15.9         21           3
 M methionine          3.0          4           1
 N asparagine          1.5          2           1
 P proline             7.6         10           1
 Q glutamine           6.1          8           2
 R arginine            9.1         12           2
 S serine              3.8          5           2
 T threonine           5.3          7           2
 V valine              3.0          4           1
 W tryptophan          0.0          0           0
 Y tyrosine            1.5          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   agouti related protein homolog isoform 1 
AGRP                  1.000   agouti related protein homolog isoform 2 
ASIP                  0.104   agouti signaling protein precursor 
LOC100292266          0.020   PREDICTED: hypothetical protein 
LAMA3                 0.016   laminin alpha 3 subunit isoform 1 
LAMA3                 0.016   laminin alpha 3 subunit isoform 3 
PAXIP1                0.016   PAX interacting protein 1 
ACD                   0.012   adrenocortical dysplasia homolog isoform 3 
ACD                   0.012   adrenocortical dysplasia homolog isoform 1 
ACD                   0.012   adrenocortical dysplasia homolog isoform 2 
NFXL1                 0.012   nuclear transcription factor, X-box binding-like 1 [...
DENND1A               0.012   DENN/MADD domain containing 1A isoform 1 
ECE1                  0.012   endothelin converting enzyme 1 isoform 1 
HDAC10                0.012   histone deacetylase 10 isoform 2 
HDAC10                0.012   histone deacetylase 10 isoform 1 
CCDC62                0.012   coiled-coil domain containing 62 isoform b 
CCDC62                0.012   coiled-coil domain containing 62 isoform a 
NXNL1                 0.012   nucleoredoxin-like 1 
DNAH14                0.008   dynein, axonemal, heavy polypeptide 14 isoform 1 [H...
THBS1                 0.008   thrombospondin 1 precursor 
EXTL3                 0.008   exostoses-like 3 
NOXA1                 0.008   NADPH oxidase activator 1 
CCDC88B               0.008   coiled-coil domain containing 88 
C17orf85              0.008   ELG protein isoform a 
LOC100290671          0.008   PREDICTED: hypothetical protein XP_002347099 
LOC100289618          0.008   PREDICTED: hypothetical protein XP_002342982 
SPON1                 0.008   spondin 1, extracellular matrix protein 
STAB2                 0.008   stabilin 2 precursor 
KIAA0182              0.008   genetic suppressor element 1 isoform 2 
KIAA0182              0.008   genetic suppressor element 1 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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